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NBDC - LSDB Archive
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BP918085
Clone id YMU001_000109_D09
Library
Length 502
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGAAGCTGCTCTACTTACGACAATATGCAGATCTCTTCTTCGAGTTTCTCTTTGCAACCG
GTGTCGTCCTATCCGTGCCTTCCCTGGTTTTTTCTTGAGTCTTTTTTGGTTTCTGAGTTC
CTTTTCCGCTGTTTTGTTGTTTGCTTCCGATTTGTCTTCGTGTCTATCCTCTCTTCATTA
TTCCTCTCATGACCTTTGTATGTAACCCTCATGCGTGTGCGTTCATCCAATGCCTTCTCT
CATGTCAATTTTTTTTTCCACCTTCTATTGCCTCTTTTTTGTGTACATGCTTCTCTGTCA
TCTAATCCTTTTTGAATCCTCTCTATTGCCAATTCCATTTGCTCGTTTTCTCTTCTTTCT
CATGTTATGACTTGTCTTTGGAGGGTCTCCACTCCTACAACCACCATATTTTTTGGATGA
TCTCCCTTGAACATGTATTTATGCTTTTGCATAGATGAATTAGAAATCTATGCTTTTTTG
GCATGGCCGAGTGGATCGAGTG
■■Homology search results ■■ -
sp_hit_id Q1E1H4
Definition sp|Q1E1H4|NST1_COCIM Stress response protein NST1 OS=Coccidioides immitis
Align length 72
Score (bit) 37.0
E-value 0.012
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918085|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_D09.
         (502 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1E1H4|NST1_COCIM Stress response protein NST1 OS=Coccidioide...    37   0.012
sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Pichia g...    34   0.44 
sp|A2R7P5|NST1_ASPNC Stress response protein nst1 OS=Aspergillus...    32   2.1  
sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain...    32   2.2  
sp|O88735|MAP7_MOUSE Ensconsin OS=Mus musculus GN=Map7 PE=1 SV=1       31   3.7  
sp|Q63624|SFR19_RAT Splicing factor, arginine/serine-rich 19 OS=...    31   3.7  
sp|Q5U4C3|SFR19_MOUSE Splicing factor, arginine/serine-rich 19 O...    31   3.7  
sp|P29536|LMOD1_HUMAN Leiomodin-1 OS=Homo sapiens GN=LMOD1 PE=1 ...    31   3.7  
sp|Q6WKZ8|UBR2_MOUSE E3 ubiquitin-protein ligase UBR2 OS=Mus mus...    30   4.8  
sp|Q8CH25|SLTM_MOUSE SAFB-like transcription modulator OS=Mus mu...    30   4.8  
sp|Q5B3C8|NST1_EMENI Stress response protein nst1 OS=Emericella ...    30   4.8  
sp|Q5RJP9|S12IP_RAT Protein SFRS12IP1 OS=Rattus norvegicus GN=Sf...    30   6.4  
sp|Q8IWV8|UBR2_HUMAN E3 ubiquitin-protein ligase UBR2 OS=Homo sa...    30   8.2  
sp|Q6BVE1|SPT6_DEBHA Transcription elongation factor SPT6 OS=Deb...    30   8.2  
sp|Q0CP15|NST1_ASPTN Stress response protein nst1 OS=Aspergillus...    30   8.2  
sp|Q5ZIA2|MAP7_CHICK Ensconsin OS=Gallus gallus GN=MAP7 PE=2 SV=1      30   8.2  

>sp|Q1E1H4|NST1_COCIM Stress response protein NST1 OS=Coccidioides
           immitis GN=NST1 PE=3 SV=1
          Length = 1227

 Score = 37.0 bits (84), Expect(2) = 0.012
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = -3

Query: 383 LQRQVIT*ERRENEQMELAIERIQKGLDDREACTQKRGNRRWKKKLT*EKALDERTRMRV 204
           LQ+Q    ER + E    A E  QK L+++    Q+R     +KK   EK   E  R R 
Sbjct: 538 LQKQAKEEERAKREAERAAEEAAQKALEEKRLEEQRRKKEEQRKKREAEKKAQEEERQRK 597

Query: 203 TYKGHERNNEER 168
             +  +R  EER
Sbjct: 598 EAERQKRLKEER 609



 Score = 21.2 bits (43), Expect(2) = 0.012
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -2

Query: 153 KSEANNKTAEKELRNQKRLKKKPGKARIGRHRLQRETRRR 34
           + EA  +  E++   ++ L++K  K +  R R +RE + R
Sbjct: 630 REEAKKREREEKEAKERELREK--KIKEERERREREEKAR 667


>sp|A5DKW3|DRS1_PICGU ATP-dependent RNA helicase DRS1 OS=Pichia
           guilliermondii GN=DRS1 PE=3 SV=2
          Length = 705

 Score = 33.9 bits (76), Expect = 0.44
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
 Frame = -1

Query: 295 EKHVHKKEAIEGGKKN*HER--RHWMNAHA*---GLHTKVMRGIMKRG*TRRQIGSKQQN 131
           E  + K   I   +K  H R  R W  +         T VM+ + K G   +++ SK++ 
Sbjct: 617 EMQLEKASNIMKHEKEIHSRPKRTWFQSEQEKKQAQRTPVMQSLTKHG---KKVNSKKRK 673

Query: 130 SGKGTQKPKKTQEKTREGTDRTTPVAKRNSKKR 32
           + +  ++ K++ +KT+  +DR+ P  K  SKKR
Sbjct: 674 AHEERKEEKRSYKKTK--SDRSAPKTKAKSKKR 704


>sp|A2R7P5|NST1_ASPNC Stress response protein nst1 OS=Aspergillus
           niger (strain CBS 513.88 / FGSC A1513) GN=nst1 PE=3 SV=1
          Length = 1201

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 27/116 (23%), Positives = 46/116 (39%)
 Frame = -3

Query: 383 LQRQVIT*ERRENEQMELAIERIQKGLDDREACTQKRGNRRWKKKLT*EKALDERTRMRV 204
           LQ+Q    E+   E  + A E   K   +++   Q+R     KKK   E+   E  R+R 
Sbjct: 560 LQKQAKEEEKARREAEKAAEEAAAKAEQEKKLEEQRRKREEQKKKREAERKAQEAERLRK 619

Query: 203 TYKGHERNNEERIDXXXXXXXXXXXXXXNSETKKDSRKNQGRHG*DDTGCKEKLEE 36
             +  +R  EER                  + ++++R+N+ R        + KL E
Sbjct: 620 EAEKQKRLREERERQAEIERKQREQKELEKKRREEARQNELREKKTKDERERKLRE 675


>sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain
            protein 2B OS=Gallus gallus GN=BAZ2B PE=2 SV=1
          Length = 2130

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -2

Query: 147  EANNKTAEKELRNQKRLKKKPGKARIGRHRLQRETRRRDLHIVVSRA 7
            EA  +  EKE+R Q+ +  K     + RHRL  E  RR  H+++ +A
Sbjct: 896  EAEKRIKEKEMRRQQAVLLK--HQELERHRLDMERERRRQHMMLMKA 940


>sp|O88735|MAP7_MOUSE Ensconsin OS=Mus musculus GN=Map7 PE=1 SV=1
          Length = 730

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = -3

Query: 425 GDHPKNMVVVGVETLQRQVIT*ERRENEQMELAI-ERIQKGLDDREACTQKRGNRRWKKK 249
           G+ P    V+ V+  QR  +  ERRE  + +LA  E +    ++R     +R     KKK
Sbjct: 52  GNKPDPPPVLRVDDRQR--LARERREEREKQLAARETVWLEREERARQHYERHLEARKKK 109

Query: 248 LT*EKALDERTRMRVTYKGHERNNEER 168
           L  ++  +ER R  V  K  +R  E++
Sbjct: 110 LEDQRLKEERRRAAVEEKRRQRLEEDK 136


>sp|Q63624|SFR19_RAT Splicing factor, arginine/serine-rich 19
           OS=Rattus norvegicus GN=Scaf1 PE=1 SV=2
          Length = 1258

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 175 KRG*TRRQIGSKQQNSGKGTQKPKKTQEKTREGTDRTTPVAKRNSKKRSA 26
           K+   + + G+K+    KG  KP KT++K R G   T      + KK  A
Sbjct: 847 KKTKAKAKAGAKKAKGTKGKTKPSKTRKKVRSGGSSTASGGPGSLKKSKA 896


>sp|Q5U4C3|SFR19_MOUSE Splicing factor, arginine/serine-rich 19
           OS=Mus musculus GN=Scaf1 PE=1 SV=1
          Length = 1256

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 175 KRG*TRRQIGSKQQNSGKGTQKPKKTQEKTREGTDRTTPVAKRNSKKRSA 26
           K+   + + G+K+    KG  KP KT++K R G   T      + KK  A
Sbjct: 845 KKTKAKAKAGAKKAKGTKGKTKPSKTRKKVRSGGSSTASGGPGSLKKSKA 894


>sp|P29536|LMOD1_HUMAN Leiomodin-1 OS=Homo sapiens GN=LMOD1 PE=1
           SV=2
          Length = 600

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = -1

Query: 196 KVMRGIMKRG*TRRQIGSKQQNS-GKGTQKPKKTQ-EKTREGTDRTTPVAKRNSKKR 32
           K++RGI K G  R  +  K+    G+G ++   T+ E+ ++G+DR T +++   KKR
Sbjct: 153 KIIRGIDK-GRVRAAVDKKEAGKDGRGEERAVATKKEEEKKGSDRNTGLSRDKDKKR 208


>sp|Q6WKZ8|UBR2_MOUSE E3 ubiquitin-protein ligase UBR2 OS=Mus musculus
            GN=Ubr2 PE=1 SV=2
          Length = 1755

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +3

Query: 333  FHLLV-----FSSFSCYDLSLEGLHSYNHHIFWMISLEHVFMLL 449
            FHLLV     F +  C D S   L + + HIF ++++ H+  +L
Sbjct: 1414 FHLLVGLVLAFPALQCQDFSGSSLATGDLHIFHLVTMAHIVQIL 1457


>sp|Q8CH25|SLTM_MOUSE SAFB-like transcription modulator OS=Mus
           musculus GN=Sltm PE=1 SV=1
          Length = 1031

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 21/74 (28%), Positives = 41/74 (55%)
 Frame = -3

Query: 389 ETLQRQVIT*ERRENEQMELAIERIQKGLDDREACTQKRGNRRWKKKLT*EKALDERTRM 210
           E LQR+    ER E E+ +L  ER+++   +RE    ++  RR  +++  E+    R + 
Sbjct: 657 ERLQRER---ERLEIERQKLERERMERERLERERIRIEQERRREAERIAREREELRRQQQ 713

Query: 209 RVTYKGHERNNEER 168
           ++ Y+  +RN+ +R
Sbjct: 714 QLRYEQEKRNSLKR 727
tr_hit_id A7EEH3
Definition tr|A7EEH3|A7EEH3_SCLS1 Putative uncharacterized protein OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
Align length 62
Score (bit) 35.4
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918085|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_D09.
         (502 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7EEH3|A7EEH3_SCLS1 Putative uncharacterized protein OS=Scler...    35   1.5  
tr|A2AUY3|A2AUY3_MOUSE Bromodomain adjacent to zinc finger domai...    35   1.5  
tr|A9SMX9|A9SMX9_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.5  
tr|A6R1R1|A6R1R1_AJECN Putative uncharacterized protein OS=Ajell...    35   2.0  
tr|Q384Y2|Q384Y2_9TRYP Putative uncharacterized protein OS=Trypa...    35   2.6  
tr|Q22GW0|Q22GW0_TETTH Protein kinase domain containing protein ...    35   2.6  
tr|Q4XMB8|Q4XMB8_PLACH Putative uncharacterized protein (Fragmen...    34   4.5  
tr|B6N6W6|B6N6W6_BRAFL Putative uncharacterized protein OS=Branc...    34   4.5  
tr|B6L1S5|B6L1S5_BRAFL Putative uncharacterized protein OS=Branc...    34   4.5  
tr|B6NE94|B6NE94_BRAFL Putative uncharacterized protein OS=Branc...    33   5.8  
tr|B6M9E1|B6M9E1_BRAFL Putative uncharacterized protein OS=Branc...    33   5.8  
tr|B8M7K1|B8M7K1_9EURO Stress response protein Nst1, putative OS...    30   7.3  
tr|B4MAN1|B4MAN1_DROVI GJ15944 OS=Drosophila virilis GN=GJ15944 ...    33   7.4  
tr|B6QC20|B6QC20_PENMA OB-fold nucleic acid binding domain OS=Pe...    33   7.4  
tr|Q4SXP6|Q4SXP6_TETNG Chromosome 6 SCAF12355, whole genome shot...    33   7.6  
tr|B4P2W2|B4P2W2_DROYA GE16990 OS=Drosophila yakuba GN=GE16990 P...    33   7.6  
tr|B6PSR8|B6PSR8_BRAFL Putative uncharacterized protein OS=Branc...    33   9.9  
tr|B6M7K9|B6M7K9_BRAFL Putative uncharacterized protein OS=Branc...    33   9.9  

>tr|A7EEH3|A7EEH3_SCLS1 Putative uncharacterized protein
            OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
            Ss-1) GN=SS1G_03713 PE=4 SV=1
          Length = 1379

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = -3

Query: 347  NEQMELAIERIQKGLDDR----EACTQKRGNRRWKKKLT*EKALDERTRMRVTYKGHERN 180
            +E++E   ER+ KG+D+R    +    KR N R+ +     + +DER   RV  + +ER 
Sbjct: 1257 DERVERVDERVDKGVDERVERVDERVDKRANERFDESA--NERVDERANERVNERSNERV 1314

Query: 179  NE 174
            NE
Sbjct: 1315 NE 1316


>tr|A2AUY3|A2AUY3_MOUSE Bromodomain adjacent to zinc finger domain,
           2B (Fragment) OS=Mus musculus GN=Baz2b PE=4 SV=1
          Length = 296

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = -2

Query: 147 EANNKTAEKELRNQKRLKKKPGKARIGRHRLQRETRRRDLHIVVSRA 7
           EA  +T EKELR Q+ +  K     + RHRL  E  RR  H+++ +A
Sbjct: 133 EAEKRTKEKELRRQQAVLLK--HQELERHRLDMERERRRQHVMLMKA 177


>tr|A9SMX9|A9SMX9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_81558 PE=4 SV=1
          Length = 243

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = -1

Query: 244 HERRHWMNAHA*GLHTKVMRGIMKRG*TRRQIGSKQQNSGKGTQKPKKTQEKTREGTDRT 65
           H+ RHW+      LH K +RG++K        G ++Q  G G   P + +   ++ +D  
Sbjct: 16  HQSRHWLRIPNNALH-KSVRGMLK--------GKEKQEQGSGAASPSRNEADGKDRSDAG 66

Query: 64  TPVAKRNSK 38
             V+  NSK
Sbjct: 67  LCVSCNNSK 75


>tr|A6R1R1|A6R1R1_AJECN Putative uncharacterized protein
           OS=Ajellomyces capsulata (strain NAm1 / WU24)
           GN=HCAG_03569 PE=4 SV=1
          Length = 1046

 Score = 35.0 bits (79), Expect = 2.0
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -2

Query: 147 EANNKTAEKELRNQKRLKKKPGKARIGRHRLQRETRRR 34
           E N K AE+E  N+KR + K  + R+ R R++RE   R
Sbjct: 802 EKNRKAAEREFENKKRQRIKEVQERLRRERMEREEEER 839


>tr|Q384Y2|Q384Y2_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb11.02.4710 PE=4 SV=1
          Length = 177

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +3

Query: 174 FIIPLMTFVCNPHACAFIQCL---LSCQFFFPPSIASFLCTCFSVI*SFLNPLYCQFHLL 344
           F  PL  FV +P + ++I CL    S  FFFP +I SF+  CF  +  F   L C     
Sbjct: 11  FCFPLHLFVFSPLS-SYISCLHTFFSWLFFFPFTI-SFVFCCFCCLLLFFLSLLCFLFFE 68

Query: 345 VFSSF 359
           VF SF
Sbjct: 69  VFFSF 73


>tr|Q22GW0|Q22GW0_TETTH Protein kinase domain containing protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_00655960 PE=4
            SV=1
          Length = 2818

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -1

Query: 160  RRQIGSKQQNSGKGTQKPKKTQEKTREGTDRTTPVAKRNSKKRSA 26
            RRQ+ SK+Q   K  +K  + Q K +E   +  P+ +RN  +RS+
Sbjct: 1893 RRQLNSKRQIKKKKDEKSNQNQIKAQESKSQLNPIPQRNLMRRSS 1937


>tr|Q4XMB8|Q4XMB8_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC108904.00.0 PE=4 SV=1
          Length = 285

 Score = 33.9 bits (76), Expect = 4.5
 Identities = 29/115 (25%), Positives = 52/115 (45%)
 Frame = -2

Query: 378 KTSHNMRKKRKRANGIGNREDSKRIR*QRSMYTKKRQ*KVEKKIDMREGIG*THTHEGYI 199
           K     +K++KR      R+  KR + Q+    KKRQ K++KK   R+        +  +
Sbjct: 135 KRKKRQKKRQKRKKKKQKRKKKKRKKRQKKR--KKRQKKMQKKQKKRQ-----KRQKKKM 187

Query: 198 QRS*XXXXXXXXXXDKSEANNKTAEKELRNQKRLKKKPGKARIGRHRLQRETRRR 34
           Q+             + +   K  +K+ + QKR KKK  K +  R + Q++ ++R
Sbjct: 188 QKK---------QKKRKKRQKKMQKKQKKRQKRQKKKRKKGQKKRQKRQKKMQKR 233


>tr|B6N6W6|B6N6W6_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_91457 PE=4 SV=1
          Length = 522

 Score = 33.9 bits (76), Expect = 4.5
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -1

Query: 175 KRG*TRRQIGSKQQNSGKGTQKPKKTQEKTREGTDRTTPVAKRNSKKRSAYCRK 14
           KR    R+   + +   KGT++ +K ++ T+     +T  AKRN K+R    RK
Sbjct: 460 KRNEKERKGAKRNEKERKGTKRNEKERKGTKRNEKESTESAKRNEKERKGKYRK 513


>tr|B6L1S5|B6L1S5_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_65059 PE=4 SV=1
          Length = 337

 Score = 33.9 bits (76), Expect = 4.5
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -1

Query: 175 KRG*TRRQIGSKQQNSGKGTQKPKKTQEKTREGTDRTTPVAKRNSKKRSAYCRK 14
           KR    R+   + +   KGT++ +K ++ T+     +T  AKRN K+R    RK
Sbjct: 243 KRNEKERKGAKRNEKERKGTKRNEKERKGTKRNEKESTESAKRNEKERKGKYRK 296


>tr|B6NE94|B6NE94_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_94108 PE=4 SV=1
          Length = 107

 Score = 33.5 bits (75), Expect = 5.8
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -1

Query: 175 KRG*TRRQIGSKQQNSGKGTQKPKKTQEKTREGTDRTTPVAKRNSKKRSAYCRK 14
           KR    R+   + +   KGT++ +K ++ T+     +T  AKRN K+R    RK
Sbjct: 41  KRSEKERKGTKRSEKERKGTKRSEKERKGTKRNEKESTESAKRNEKERKGKYRK 94