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NBDC - LSDB Archive
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BP918090
Clone id YMU001_000109_E02
Library
Length 463
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_E02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAGGAGCTGCAGGCCAACAAGAAGGGGCCAAAAGTGGTACCACCTATATATGCCATCACC
CATATGGTAACAACACAATTATCCTTGCAAGTTGATTGAAGAGTTACATTCCATCTCCGT
TGCTGCTGTAACTCTTGATGTAAGGACACAACCAATTGAATTTGAAGTACCCTTAGCGAG
TTTGAGCACAAACATTTTCAAGAGTGCTCTTCTTGTCCTTGAGAACCTTATCAAGCACAT
CTTGCTCGCCTGTCAGTTTGTTGGCCATTGTGAACTTATTATTAAGTTCATCTTGTTGAC
TCACTAACCCAACAACACCTACATCTGTCCTTTTTCCATCAGAAAACAATAGTTCATTTT
GCCCTTTGAATAATTGTTCATAAGATGCTCATTCATGTTGTAGACTCCCAAAAATCTCAT
TGAGATTCCCCTCTAACGTTGTATTCCTGGTAGTAGCAATGGT
■■Homology search results ■■ -
sp_hit_id Q5SZK8
Definition sp|Q5SZK8|FREM2_HUMAN FRAS1-related extracellular matrix protein 2 OS=Homo sapiens
Align length 36
Score (bit) 31.6
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918090|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_E02.
         (463 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5SZK8|FREM2_HUMAN FRAS1-related extracellular matrix protein...    32   1.8  
sp|A0JSM6|UPP_ARTS2 Uracil phosphoribosyltransferase OS=Arthroba...    31   3.0  
sp|A1R2Y2|UPP_ARTAT Uracil phosphoribosyltransferase OS=Arthroba...    31   3.0  
sp|Q8F5K1|SYD_LEPIN Aspartyl-tRNA synthetase OS=Leptospira inter...    31   3.0  
sp|Q72QK5|SYD_LEPIC Aspartyl-tRNA synthetase OS=Leptospira inter...    31   3.0  
sp|A1W748|UPP_ACISJ Uracil phosphoribosyltransferase OS=Acidovor...    30   3.9  
sp|A1WQN5|UPP_VEREI Uracil phosphoribosyltransferase OS=Verminep...    30   5.1  
sp|A1VN11|UPP_POLNA Uracil phosphoribosyltransferase OS=Polaromo...    30   5.1  

>sp|Q5SZK8|FREM2_HUMAN FRAS1-related extracellular matrix protein 2
            OS=Homo sapiens GN=FREM2 PE=1 SV=2
          Length = 3169

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 119  VAAVTLDVRTQPIEFEVPLASLSTNIFKSALLVLEN 226
            V  +TL V  +P++ EVP+ S  T   +S L VLEN
Sbjct: 924  VVPITLRVNVRPVDDEVPILSHPTGTLESYLDVLEN 959


>sp|A0JSM6|UPP_ARTS2 Uracil phosphoribosyltransferase
           OS=Arthrobacter sp. (strain FB24) GN=upp PE=3 SV=1
          Length = 211

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 53  PSPIW*QHNYPCKLIEELHSISVAAVTLDVRTQPIEFEVPLA-SLSTNIFKSALLVL 220
           PSP++ Q      L EEL ++     T DVRT+P+  E P++ ++ T   K   LV+
Sbjct: 24  PSPVFRQ------LTEELVTLLAYEATRDVRTEPVTIETPVSTTIGTAFTKPTPLVV 74


>sp|A1R2Y2|UPP_ARTAT Uracil phosphoribosyltransferase
           OS=Arthrobacter aurescens (strain TC1) GN=upp PE=3 SV=1
          Length = 211

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +2

Query: 53  PSPIW*QHNYPCKLIEELHSISVAAVTLDVRTQPIEFEVPLA-SLSTNIFKSALLVL 220
           PSP++ Q      L EEL ++     T +V+TQP+E E P+  ++ T   K   LV+
Sbjct: 24  PSPVFRQ------LTEELVTLLAYEATREVKTQPVEIETPVTKTVGTAFTKPTPLVV 74


>sp|Q8F5K1|SYD_LEPIN Aspartyl-tRNA synthetase OS=Leptospira
           interrogans GN=aspS PE=3 SV=1
          Length = 601

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = -1

Query: 448 RNTTLEGNLNEIFGSLQHE*ASYEQLFKGQNELLFSDGKRTDVGVVGLVSQQDELNNKFT 269
           +N +  G LNE     Q     +   F+ Q  ++F D  R   G++ +V++++ L + FT
Sbjct: 10  KNRSWAGELNESQEGKQIVLFGWSFRFRDQGGVIFID-LRDRTGIIQVVARKELLGDSFT 68

Query: 268 MANKLTGE 245
           +A K+  E
Sbjct: 69  LAEKVRSE 76


>sp|Q72QK5|SYD_LEPIC Aspartyl-tRNA synthetase OS=Leptospira
           interrogans serogroup Icterohaemorrhagiae serovar
           copenhageni GN=aspS PE=3 SV=1
          Length = 601

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = -1

Query: 448 RNTTLEGNLNEIFGSLQHE*ASYEQLFKGQNELLFSDGKRTDVGVVGLVSQQDELNNKFT 269
           +N +  G LNE     Q     +   F+ Q  ++F D  R   G++ +V++++ L + FT
Sbjct: 10  KNRSWAGELNESQEGKQIVLFGWSFRFRDQGGVIFID-LRDRTGIIQVVARKELLGDSFT 68

Query: 268 MANKLTGE 245
           +A K+  E
Sbjct: 69  LAEKVRSE 76


>sp|A1W748|UPP_ACISJ Uracil phosphoribosyltransferase OS=Acidovorax
           sp. (strain JS42) GN=upp PE=3 SV=1
          Length = 209

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +2

Query: 89  KLIEELHSISVAAVTLDVRTQPIEFEVPLASLSTNIFKSALLVLENLIK 235
           +L+ EL ++    VT D+  Q I+ E PL +++  +     LVL ++++
Sbjct: 31  RLLGELSTLMAYEVTRDMPLQDIQIETPLETMTGKVIDGKKLVLVSILR 79


>sp|A1WQN5|UPP_VEREI Uracil phosphoribosyltransferase
           OS=Verminephrobacter eiseniae (strain EF01-2) GN=upp
           PE=3 SV=1
          Length = 209

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +2

Query: 89  KLIEELHSISVAAVTLDVRTQPIEFEVPLASLSTNIFKSALLVLENLIK 235
           +L+ EL  +    VT D+   P++ E PL +++  +     LVL ++++
Sbjct: 31  RLLGELSQLMAYEVTRDMPLSPVQIETPLETMTGQMIDGKKLVLVSILR 79


>sp|A1VN11|UPP_POLNA Uracil phosphoribosyltransferase OS=Polaromonas
           naphthalenivorans (strain CJ2) GN=upp PE=3 SV=1
          Length = 209

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 92  LIEELHSISVAAVTLDVRTQPIEFEVPLASLSTNIFKSALLVLENLIK 235
           L+ EL ++    VT D+  Q IE E PL + +  I     LVL ++++
Sbjct: 32  LLAELSNLMAYEVTRDMPLQDIEVETPLETTTGKIIDGKKLVLVSILR 79
tr_hit_id A7ATR6
Definition tr|A7ATR6|A7ATR6_BABBO Putative uncharacterized protein OS=Babesia bovis
Align length 76
Score (bit) 35.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918090|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_E02.
         (463 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7ATR6|A7ATR6_BABBO Putative uncharacterized protein OS=Babes...    35   1.8  

>tr|A7ATR6|A7ATR6_BABBO Putative uncharacterized protein OS=Babesia
           bovis GN=BBOV_II003720 PE=4 SV=1
          Length = 644

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
 Frame = +2

Query: 146 TQPIEFEVPLASLSTNIFKSALLVLENLIKHI---------LLACQFVGHCELIIKFILL 298
           TQ +    P    + N+ +  LL LE  I HI         L  C  + H  L I FI +
Sbjct: 385 TQHVSNFAPKTPTTLNLIQKVLLYLEEYIDHIDEKTAINLALSICANMAHGMLEIVFITI 444

Query: 299 TH*PNNTYICPFSIRK 346
                NTYI PF +RK
Sbjct: 445 AE--VNTYISPFLLRK 458