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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918092
Clone id YMU001_000109_E04
Library
Length 365
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAAATGCAACAATTTATCACCAGCAAACCACCGGTAAGCTCTGTAGATGACCAACACACT
CTGAGCACATCCCAATGTCATTGCTCGAATCCCTTTCTCTATGATCAAATGCAGCTATGC
GAAGTTAAATCCACGTTATGATTTAACTGAGAGGCCAGCAAATGTGAAATTTGAACCACT
TCGGCCCTCCCGTTGCGTAGGAAAGGCACACAACTACCTCTGAGACTCGTACAATTTTGT
ACAGTGTGCAAGATTGTAGGGTATACACATTTACAACTCTTTAAGGCAATCCTGGAACCT
CCAGAATATACAAACCATTTTATTCTGTGTGTGTAAGAACTACATAGGTTTGCGACACAG
ATATA
■■Homology search results ■■ -
sp_hit_id P33215
Definition sp|P33215|NEDD1_MOUSE Protein NEDD1 OS=Mus musculus
Align length 86
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918092|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_E04.
         (365 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P33215|NEDD1_MOUSE Protein NEDD1 OS=Mus musculus GN=Nedd1 PE=...    32   1.3  
sp|Q8NHV4|NEDD1_HUMAN Protein NEDD1 OS=Homo sapiens GN=NEDD1 PE=...    29   6.4  
sp|Q3B7M6|NEDD1_BOVIN Protein NEDD1 OS=Bos taurus GN=NEDD1 PE=2 ...    29   6.4  

>sp|P33215|NEDD1_MOUSE Protein NEDD1 OS=Mus musculus GN=Nedd1 PE=2
           SV=2
          Length = 660

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
 Frame = -1

Query: 356 VANLCSSYTHRIKWFVYSGGSRIALKSCKCVYPTILHTV----QNCTSLRGSCVPFLRNG 189
           ++++C S  +       S G +I + SCKC    +L       Q C  L  + +     G
Sbjct: 37  ISSICWSSNNNFLVTASSSGDKIVVSSCKCKPVPLLELAEGQKQTCVDLNSTSMYLASGG 96

Query: 188 RAEVVQISHLLASQLNHNVDLTSHSC 111
               V I  L + +L+ +  L  H C
Sbjct: 97  LNNTVNIWDLKSKRLHRS--LKDHKC 120


>sp|Q8NHV4|NEDD1_HUMAN Protein NEDD1 OS=Homo sapiens GN=NEDD1 PE=1
           SV=1
          Length = 660

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = -1

Query: 356 VANLCSSYTHRIKWFVYSGGSRIALKSCKCVYPTILHTV----QNCTSLRGSCVPFLRNG 189
           ++++C S  +       S G +I + SCKC    +L       Q C +L  + +  +  G
Sbjct: 37  ISSICWSSNNNFLVTASSSGDKIVVSSCKCKPVPLLELAEGQKQTCVNLNSTSMYLVSGG 96

Query: 188 RAEVVQISHLLASQLNHNV 132
               V I  L + +++ ++
Sbjct: 97  LNNTVNIWDLKSKRVHRSL 115


>sp|Q3B7M6|NEDD1_BOVIN Protein NEDD1 OS=Bos taurus GN=NEDD1 PE=2
           SV=1
          Length = 659

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = -1

Query: 356 VANLCSSYTHRIKWFVYSGGSRIALKSCKCVYPTILH----TVQNCTSLRGSCVPFLRNG 189
           ++++C S  +       S G +I + SCKC    +L       Q C SL  + +  +  G
Sbjct: 37  ISSVCWSSNNNFLVTASSSGDKIVVSSCKCKPVPLLELGEGQKQTCVSLNSTSMYLVSGG 96

Query: 188 RAEVVQISHLLASQLNHNV 132
               V I  L + +++ ++
Sbjct: 97  LNNTVNIWDLKSKRVHRSL 115
tr_hit_id A8H9E6
Definition tr|A8H9E6|A8H9E6_SHEPA Putative uncharacterized protein OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
Align length 36
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918092|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_E04.
         (365 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8H9E6|A8H9E6_SHEPA Putative uncharacterized protein OS=Shewa...    33   5.5  
tr|B8MGF2|B8MGF2_9EURO MFS transporter, putative OS=Talaromyces ...    33   7.1  

>tr|A8H9E6|A8H9E6_SHEPA Putative uncharacterized protein
           OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
           GN=Spea_3873 PE=4 SV=1
          Length = 232

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 110 CSYAKLNPRYDLTERPANVKFEPLRPSRCVGKAHNY 217
           C Y   N R+D    P +  F+P R SRCV  A  +
Sbjct: 71  CHYTSFNTRFDKLNTPNSAGFKPFRESRCVVVASGF 106


>tr|B8MGF2|B8MGF2_9EURO MFS transporter, putative OS=Talaromyces
           stipitatus ATCC 10500 GN=TSTA_013720 PE=4 SV=1
          Length = 553

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 356 VANLCSSYTHRIKWF--VYSGGSRIALKSCKCVYPTILHTVQNCTS 225
           VA   +S  H  +WF  V S  + I L SC  + P+  HTV NCTS
Sbjct: 219 VAGGIASGLHSWRWFFIVTSIATGINLVSCILMLPSTSHTVDNCTS 264