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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918094
Clone id YMU001_000109_E06
Library
Length 521
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_E06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACACTGTTCAGTATGAACTAAGTGTGTGAATGAAGAACTTTGAAATAGGAATTTCTAAG
ATGATTCTGATTTATGTATGAGATTAATGTTGTCTGGAGAACTTGCTAGTTGTGTGCAGA
TAACATGTGAAATCAATGATGATAAATGCAATGGGGAGCAATGACCGCTCCAGAATGAAT
CTGATAGAAACTAATATGGAAGAATCTTCTATTTGTGAACAGATAAAGGATTGAGAATGA
GATGATGATGATGATTTTGGAGCAGTGACAACTCCCGAATGAACCTGATAACGAATCATG
GATCACGACTAATTCAATTGAAGGCTTCTTAATGGATGAGATGACCAGCTGATTGAAACA
CTGTTCAATATGAACTAAGTATGTGAATGAAGAACTTTGAAATATGAATTTTTGAAGATG
ATTTTGATTTATGTATGAGATTAATGTTGTCTGGAGAACTTGCTAGTAGTGTGCAGATAA
CATGTGAAATCAATGATGATGAATGCAATGGGGAGCAATGA
■■Homology search results ■■ -
sp_hit_id Q0IHC5
Definition sp|Q0IHC5|CI16A_XENLA Torsin family protein C9orf167 homolog A OS=Xenopus laevis
Align length 40
Score (bit) 31.6
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918094|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_E06.
         (521 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0IHC5|CI16A_XENLA Torsin family protein C9orf167 homolog A O...    32   2.4  
sp|Q8NH85|OR5R1_HUMAN Olfactory receptor 5R1 OS=Homo sapiens GN=...    31   4.0  
sp|Q8VGS1|O1038_MOUSE Olfactory receptor 1038 OS=Mus musculus GN...    30   5.3  
sp|Q5BKJ7|CI167_XENTR Torsin family protein C9orf167 homolog OS=...    30   6.9  

>sp|Q0IHC5|CI16A_XENLA Torsin family protein C9orf167 homolog A
           OS=Xenopus laevis PE=2 SV=1
          Length = 420

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = -3

Query: 444 LISYINQNHLQKFIFQSSSFTYLVHIEQCFNQLVISSIKK 325
           LIS I  N + KF+ Q++S  +L ++ Q  +Q+VISS++K
Sbjct: 305 LISNIGGNEITKFVLQNASNDFL-NLPQELHQIVISSLQK 343


>sp|Q8NH85|OR5R1_HUMAN Olfactory receptor 5R1 OS=Homo sapiens
           GN=OR5R1 PE=2 SV=1
          Length = 324

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 160 CSPLHLSSLISHVICTQLASSP 95
           CSPLH S+L+S  +C QL + P
Sbjct: 127 CSPLHYSTLMSRRVCIQLVAVP 148


>sp|Q8VGS1|O1038_MOUSE Olfactory receptor 1038 OS=Mus musculus
           GN=Olfr1038 PE=2 SV=1
          Length = 319

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 160 CSPLHLSSLISHVICTQLASSP 95
           CSPLH S+L+S  +C QL + P
Sbjct: 127 CSPLHYSTLMSKRVCIQLVAVP 148


>sp|Q5BKJ7|CI167_XENTR Torsin family protein C9orf167 homolog
           OS=Xenopus tropicalis PE=2 SV=1
          Length = 420

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = -3

Query: 444 LISYINQNHLQKFIFQSSSFTYLVHIEQCFNQLVISSIKK 325
           LIS I  N + KF+ Q+SS  + V++ Q    LV++S++K
Sbjct: 305 LISNIGGNEITKFVLQNSSKDF-VNVPQELRHLVLTSLRK 343
tr_hit_id A7S2H4
Definition tr|A7S2H4|A7S2H4_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis
Align length 52
Score (bit) 36.2
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918094|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_E06.
         (521 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7S2H4|A7S2H4_NEMVE Predicted protein (Fragment) OS=Nematoste...    36   1.00 
tr|B5EKD9|B5EKD9_ACIF5 Putative uncharacterized protein OS=Acidi...    33   8.5  
tr|B7J4V7|B7J4V7_THIFE Putative uncharacterized protein OS=Acidi...    33   8.5  
tr|Q22E41|Q22E41_TETTH Neurohypophysial hormones, N-terminal Dom...    33   8.5  

>tr|A7S2H4|A7S2H4_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g101998 PE=4 SV=1
          Length = 188

 Score = 36.2 bits (82), Expect = 1.00
 Identities = 19/52 (36%), Positives = 32/52 (61%)
 Frame = -3

Query: 507 CIHHH*FHMLSAHY*QVLQTTLISYINQNHLQKFIFQSSSFTYLVHIEQCFN 352
           C HHH FH  ++H  +V  TT+I +I+  H++K +   SSF+Y+     C++
Sbjct: 95  CYHHHHFH--TSHQ-KVYATTIIIFIH--HIKKCMLPPSSFSYITSKSVCYH 141



 Score = 35.8 bits (81), Expect = 1.3
 Identities = 19/52 (36%), Positives = 32/52 (61%)
 Frame = -3

Query: 507 CIHHH*FHMLSAHY*QVLQTTLISYINQNHLQKFIFQSSSFTYLVHIEQCFN 352
           C HHH FH  ++H  +V  T +I +I+  H++K +  SSSF+Y+     C++
Sbjct: 139 CYHHHHFH--TSHQ-KVYATIIIIFIH--HIKKCMLPSSSFSYITSKSVCYH 185


>tr|B5EKD9|B5EKD9_ACIF5 Putative uncharacterized protein
           OS=Acidithiobacillus ferrooxidans (strain ATCC 53993)
           GN=Lferr_1753 PE=4 SV=1
          Length = 434

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -3

Query: 459 VLQTTLISYINQNHLQ-KFIFQSSSFTYLVHIEQCFNQLVISSIKKPSIELVVIHDSLSG 283
           +L  +++ YINQ+      I  +S  TY   IE C +++++  I    +   VIHD L  
Sbjct: 244 LLVPSILCYINQSAFPYNLISTASGLTYEDAIEHCLSEIMLGLISYTLVTESVIHDQLLS 303

Query: 282 SFGS 271
           S  S
Sbjct: 304 SIES 307


>tr|B7J4V7|B7J4V7_THIFE Putative uncharacterized protein
           OS=Acidithiobacillus ferrooxidans ATCC 23270 GN=AFE_2097
           PE=4 SV=1
          Length = 434

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -3

Query: 459 VLQTTLISYINQNHLQ-KFIFQSSSFTYLVHIEQCFNQLVISSIKKPSIELVVIHDSLSG 283
           +L  +++ YINQ+      I  +S  TY   IE C +++++  I    +   VIHD L  
Sbjct: 244 LLVPSILCYINQSAFPYNLISTASGLTYEDAIEHCLSEIMLGLISYTLVTESVIHDQLLS 303

Query: 282 SFGS 271
           S  S
Sbjct: 304 SIES 307


>tr|Q22E41|Q22E41_TETTH Neurohypophysial hormones, N-terminal Domain
            containing protein OS=Tetrahymena thermophila SB210
            GN=TTHERM_00895870 PE=4 SV=1
          Length = 6552

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
 Frame = -3

Query: 447  TLISYINQ---NHLQKFIFQSSSFTYLVHIEQCFNQLVISSI-----KKPSIELVVIHDS 292
            TL+  IN+   +  Q  I   S+F YL+ I  C N L+   I     K+ S +L  I DS
Sbjct: 4206 TLLVLINKPYPSQQQNNIITFSNFCYLISI-LCINGLIYDDIANIFTKEKSHKLYSIRDS 4264

Query: 291  LSGSFGSCHCXXXXXXXXXXILYLF----TNRRFFHISFYQIHSGAVI 160
            +  S  +CH             YLF     N + F+  F +I    +I
Sbjct: 4265 IVVSIPACHAGDPGSIPGLGAFYLFLILQKNEKIFY-KFEKIELNCII 4311