BP918095
Clone id YMU001_000109_E07
Library
Length 520
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ACAAAATCTTGTTGGCTAACCTAGTCTTCTGCTCTAGGTCATAACAATGCACATCGAGGT
CCATGTGCACGTGACATTACCTTGAAGTGCTTCTCATCATGGAGTATCGTATTGGAGGCT
TTGCATCTTGTTGATGTTGCCCCTCATGGATGTCGATCTAGATGGGCCCAAGGTCCTCAA
CTGCACCTCGAATGAGGTCCGCTTCACAAGAATTGACTTGTGTCTTAAGAGTGGAAATTT
TGGCATGCTTGTCTGCGGCATTGGTAGATGTCAAAGAGAAAAGATCTTGAACCATCATCA
TTGATCGCATCAGAGATTTTGGCTGGATGATGGTACATGTGAGAGTATTTGTGTGGCTGA
CCACTCTTGTAGAGAGGTAATGCATTTATATTTTGTCATCAGGGTCCACCTTCTGCTGCC
CCTTCGACATGGTAACAAAGCTCGGGTAGATGCATCTTCATTGATTAAGTCGTCAATTTC
TTGATCATTTCTAGCTTCCCAAATAGCAAACACACAATCC
■■Homology search results ■■ -
sp_hit_id Q9Z2Q4
Definition sp|Q9Z2Q4|METH_RAT Methionine synthase OS=Rattus norvegicus
Align length 41
Score (bit) 30.8
E-value 4.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918095|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_E07.
(520 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9Z2Q4|METH_RAT Methionine synthase OS=Rattus norvegicus GN=M... 31 4.0
sp|Q47BR3|RLMN2_DECAR Ribosomal RNA large subunit methyltransfer... 30 5.2
sp|A6H5Y3|METH_MOUSE Methionine synthase OS=Mus musculus GN=Mtr ... 30 6.9
sp|Q99707|METH_HUMAN Methionine synthase OS=Homo sapiens GN=MTR ... 30 6.9
sp|Q4JIJ3|METH_BOVIN Methionine synthase OS=Bos taurus GN=MTR PE... 30 9.0
sp|P12259|FA5_HUMAN Coagulation factor V OS=Homo sapiens GN=F5 P... 30 9.0

>sp|Q9Z2Q4|METH_RAT Methionine synthase OS=Rattus norvegicus GN=Mtr
PE=2 SV=1
Length = 1253

Score = 30.8 bits (68), Expect = 4.0
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2

Query: 170 KVLNCTSNEVRFTRIDLCLKSGNFGMLVCGIGRCQREKILN 292
K N ++E ++ LC+ S NF ++ G+ CQ + I+N
Sbjct: 418 KFCNFIASEPDIAKVPLCIDSSNFAVIEAGLKCCQGKCIVN 458


>sp|Q47BR3|RLMN2_DECAR Ribosomal RNA large subunit methyltransferase
N 2 OS=Dechloromonas aromatica (strain RCB) GN=rlmN2
PE=3 SV=1
Length = 364

Score = 30.4 bits (67), Expect = 5.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -3

Query: 326 PAKISDAINDDGSRSFLFDI 267
PA +SD ++DDG+R FL D+
Sbjct: 65 PAVVSDKLSDDGTRKFLIDV 84


>sp|A6H5Y3|METH_MOUSE Methionine synthase OS=Mus musculus GN=Mtr
PE=2 SV=1
Length = 1253

Score = 30.0 bits (66), Expect = 6.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2

Query: 179 NCTSNEVRFTRIDLCLKSGNFGMLVCGIGRCQREKILN 292
N ++E ++ LC+ S NF ++ G+ CQ + I+N
Sbjct: 421 NSIASEPDIAKVPLCIDSSNFAVIEAGLKCCQGKCIVN 458


>sp|Q99707|METH_HUMAN Methionine synthase OS=Homo sapiens GN=MTR
PE=1 SV=2
Length = 1265

Score = 30.0 bits (66), Expect = 6.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2

Query: 179 NCTSNEVRFTRIDLCLKSGNFGMLVCGIGRCQREKILN 292
N ++E ++ LC+ S NF ++ G+ CQ + I+N
Sbjct: 433 NLIASEPDIAKVPLCIDSSNFAVIEAGLKCCQGKCIVN 470


>sp|Q4JIJ3|METH_BOVIN Methionine synthase OS=Bos taurus GN=MTR PE=2
SV=1
Length = 1265

Score = 29.6 bits (65), Expect = 9.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2

Query: 179 NCTSNEVRFTRIDLCLKSGNFGMLVCGIGRCQREKILN 292
N ++E ++ LC+ S NF ++ G+ CQ + I+N
Sbjct: 433 NFIASEPDIAKVPLCIDSSNFAVIEAGLKCCQGKCIVN 470


>sp|P12259|FA5_HUMAN Coagulation factor V OS=Homo sapiens GN=F5 PE=1
SV=3
Length = 2224

Score = 29.6 bits (65), Expect = 9.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -2

Query: 294 WFKIFSL*HLPMPQTSMPKFPLLRHKSILVKRTSFEVQLR 175
W + L + P Q+ PKFP +RHKS+ V++ + +L+
Sbjct: 982 WGESTPLANKPGKQSGHPKFPRVRHKSLQVRQDGGKSRLK 1021


tr_hit_id B7GA59
Definition tr|B7GA59|B7GA59_PHATR Predicted protein OS=Phaeodactylum tricornutum CCAP 1055/1
Align length 67
Score (bit) 35.4
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918095|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_E07.
(520 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B7GA59|B7GA59_PHATR Predicted protein OS=Phaeodactylum tricor... 35 1.7
tr|A7S4Q4|A7S4Q4_NEMVE P2X purinoceptor OS=Nematostella vectensi... 34 3.8

>tr|B7GA59|B7GA59_PHATR Predicted protein OS=Phaeodactylum
tricornutum CCAP 1055/1 GN=PHATRDRAFT_49306 PE=4 SV=1
Length = 262

Score = 35.4 bits (80), Expect = 1.7
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -3

Query: 365 SGQPHKYSHMYHHPAKISD-AINDDGSRSFLFDIYQCRRQACQNFHS*DTSQFL*SGPHS 189
S H++S +HH D A + D +R+ FD +C + +C + T F GPH
Sbjct: 112 SAHHHQHSGDHHHSGHDKDSAHHKDSARACTFD--ECYQTSCDAETAPYTCLFHNGGPHG 169

Query: 188 RCS*GPW 168
CS PW
Sbjct: 170 GCSVTPW 176


>tr|A7S4Q4|A7S4Q4_NEMVE P2X purinoceptor OS=Nematostella vectensis
GN=v1g104653 PE=3 SV=1
Length = 402

Score = 34.3 bits (77), Expect = 3.8
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = -2

Query: 288 KIFSL*HLPMPQTSMPKFPLLRHKSILVKRT----SFEVQLRTLGPSRSTSMRGNINKMQ 121
++F+ + + T MP+FP L++ ++L+K T SF V R + P TS ++
Sbjct: 170 EVFAWCPVELDITPMPQFPSLKNFTVLIKNTVQFPSFGVSKRNIAPDADTS------TLK 223

Query: 120 SLQYD 106
S QYD
Sbjct: 224 SCQYD 228