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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918099
Clone id YMU001_000109_E12
Library
Length 514
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_E12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGGCCGCAGGAATTTTTTTTTTTTTTTTTTTTAAACTGCAAAGATTTTTGACCTTTCCAA
TAGCATACACCAGGAGGAACTCATACAGATGACTCCTGATTTGTACAAATACACAGCTTA
TAGACAAAATATATACATTACATCGTGTGTCCCACATTATCATGAGCCATGAGAAGGCCT
GCCCTTGCTCTTTGAGATTGCAAGAAAACCTACAGACATTTCAAGATAAAACCTTTCCAT
TCTCCCCAGAGAGGCAGCTATCATAACCATGTGCGTTAAACAGACGACGACAAAATTCGC
AGCTCAGACCATCTAGAGGCCTTCCTCTTCACAACCAGCTCCATTGCCTTCATCTCTACT
GGCTCGACGGAACCACAAGTTAAAAGCACCCATGAGATGAGGGCAATCTTCCACACTTCG
CGTTGCAAAGCTCAAGGATTGCGGGAGTAGCAATTGGGCATCTCCAAGCGGTAATGTAGA
GATAATACGCAAGAACACATCCTCAAGTTCTTGA
■■Homology search results ■■ -
sp_hit_id Q9H501
Definition sp|Q9H501|ESF1_HUMAN ESF1 homolog OS=Homo sapiens
Align length 35
Score (bit) 30.8
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918099|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_E12.
         (482 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9H501|ESF1_HUMAN ESF1 homolog OS=Homo sapiens GN=ESF1 PE=1 SV=1    31   3.4  
sp|A7Z4X6|MUTL_BACA2 DNA mismatch repair protein mutL OS=Bacillu...    30   5.7  
sp|Q1GF96|Y1937_SILST UPF0343 protein TM1040_1937 OS=Silicibacte...    29   9.8  
sp|P27473|IFI44_PANTR Interferon-induced protein 44 OS=Pan trogl...    29   9.8  

>sp|Q9H501|ESF1_HUMAN ESF1 homolog OS=Homo sapiens GN=ESF1 PE=1 SV=1
          Length = 851

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 296 RGRPLDGLSCEFCRRLFNAHGYDSCLSGENGKVLS 192
           RGRP+   + E  +R ++    DS LSGE+ K LS
Sbjct: 56  RGRPISHSTTEDLKRFYDLSDSDSNLSGEDSKALS 90


>sp|A7Z4X6|MUTL_BACA2 DNA mismatch repair protein mutL OS=Bacillus
           amyloliquefaciens (strain FZB42) GN=mutL PE=3 SV=1
          Length = 624

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = +3

Query: 36  HQEELIQMTPDLYKYTAYRQNIYITSCVPHYHEP*EGLPLLFEIARKPTDISR*NLSILP 215
           HQ EL  +   L    A+  N YI  C P +    E   L+ EI ++  D  + ++  L 
Sbjct: 505 HQHELESVGVFL---EAFGTNSYIVRCHPAWFPKGEEAELIEEIIQQVLDAKQIDIKKLR 561

Query: 216 REAAIITMC 242
            EAAI+  C
Sbjct: 562 EEAAIMMSC 570


>sp|Q1GF96|Y1937_SILST UPF0343 protein TM1040_1937 OS=Silicibacter
           sp. (strain TM1040) GN=TM1040_1937 PE=3 SV=1
          Length = 367

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 82  QLIDKIYTLHRVSHIIMSHEKACPCSLRLQEN 177
           +L+      HR+ H+   +   CPCSL L E+
Sbjct: 203 ELVQMAGQRHRIVHLDYVYSSTCPCSLELSEH 234


>sp|P27473|IFI44_PANTR Interferon-induced protein 44 OS=Pan
           troglodytes GN=IFI44 PE=1 SV=1
          Length = 444

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +2

Query: 95  KYIHYIVCPTLS*AMRRPALAL*DCKKTYR-HFKIKPFHSPQRGSYHNHVR*TDDDKIRS 271
           KY+ +I+C +L  + +   L + D       + + +   +P      NH    D   ++ 
Sbjct: 243 KYLPFILCDSLGLSEKEGGLCMDDISYILNGNIRDRYQFNPMESIKLNHHDYIDSPSLKD 302

Query: 272 SDHLEAFLFTTSSIAFIST 328
             H  AF+F  SSI + S+
Sbjct: 303 RIHCVAFVFDASSIEYFSS 321
tr_hit_id A9SVW5
Definition tr|A9SVW5|A9SVW5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 53
Score (bit) 81.6
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918099|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_E12.
         (482 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SVW5|A9SVW5_PHYPA Predicted protein OS=Physcomitrella paten...    82   2e-14
tr|A9TL84|A9TL84_PHYPA Predicted protein (Fragment) OS=Physcomit...    81   3e-14
tr|A7P917|A7P917_VITVI Chromosome chr3 scaffold_8, whole genome ...    80   4e-14
tr|A5B6C7|A5B6C7_VITVI Putative uncharacterized protein OS=Vitis...    80   4e-14
tr|Q75GU4|Q75GU4_ORYSJ Os03g0723600 protein OS=Oryza sativa subs...    78   2e-13
tr|A3AM81|A3AM81_ORYSJ Putative uncharacterized protein OS=Oryza...    78   2e-13
tr|A2XLJ2|A2XLJ2_ORYSI Putative uncharacterized protein OS=Oryza...    78   2e-13
tr|B6U150|B6U150_MAIZE Putative uncharacterized protein OS=Zea m...    73   6e-12
tr|B4FBN9|B4FBN9_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.22 
tr|Q7X711|Q7X711_ORYSJ Os04g0579700 protein OS=Oryza sativa subs...    38   0.28 
tr|A7PV27|A7PV27_VITVI Chromosome chr4 scaffold_32, whole genome...    38   0.28 
tr|A2XWQ8|A2XWQ8_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.28 
tr|B7ZZ25|B7ZZ25_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.49 
tr|Q9SVM0|Q9SVM0_ARATH Putative uncharacterized protein F18B3.60...    37   0.63 
tr|A9S6T8|A9S6T8_PHYPA Predicted protein (Fragment) OS=Physcomit...    36   0.83 
tr|A7NZA6|A7NZA6_VITVI Chromosome chr6 scaffold_3, whole genome ...    36   0.83 
tr|Q75KA7|Q75KA7_ORYSJ Os03g0769400 protein OS=Oryza sativa subs...    36   1.1  
tr|A9RBR2|A9RBR2_PHYPA Predicted protein (Fragment) OS=Physcomit...    36   1.1  
tr|A2XMC4|A2XMC4_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|A7QNK5|A7QNK5_VITVI Chromosome chr2 scaffold_132, whole genom...    35   1.4  
tr|B4D4S6|B4D4S6_9BACT Sulfatase OS=Chthoniobacter flavus Ellin4...    35   1.8  
tr|Q6Z4R8|Q6Z4R8_ORYSJ cDNA, clone: J065118J05, full insert sequ...    35   2.4  
tr|Q0D8W1|Q0D8W1_ORYSJ Os07g0123500 protein OS=Oryza sativa subs...    35   2.4  
tr|B8B6U8|B8B6U8_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.4  
tr|A3BG61|A3BG61_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.4  
tr|Q9LVG9|Q9LVG9_ARATH Gb|AAF07368.1 (Putative uncharacterized p...    34   3.1  
tr|A7Q7H9|A7Q7H9_VITVI Chromosome undetermined scaffold_60, whol...    34   3.1  
tr|Q6T282|Q6T282_9ROSI Predicted protein OS=Populus tremula x Po...    34   4.1  
tr|Q9CAJ9|Q9CAJ9_ARATH Putative uncharacterized protein T12P18.1...    33   5.4  
tr|Q7XLJ0|Q7XLJ0_ORYSA OSJNBa0009K15.20 protein OS=Oryza sativa ...    33   5.4  

>tr|A9SVW5|A9SVW5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_136083 PE=4 SV=1
          Length = 462

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 37/53 (69%), Positives = 46/53 (86%)
 Frame = -2

Query: 481 QELEDVFLRIISTLPLGDAQLLLPQSLSFATRSVEDCPHLMGAFNLWFRRASR 323
           QELEDVFL+II TLP+ ++Q LL Q LSFAT+++EDCPHL+ AFN WFRRA+R
Sbjct: 396 QELEDVFLKIILTLPMSESQKLLQQCLSFATQNLEDCPHLVNAFNAWFRRANR 448


>tr|A9TL84|A9TL84_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_147324 PE=4 SV=1
          Length = 424

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 37/53 (69%), Positives = 46/53 (86%)
 Frame = -2

Query: 481 QELEDVFLRIISTLPLGDAQLLLPQSLSFATRSVEDCPHLMGAFNLWFRRASR 323
           QELE++FL II TLP+ DAQ LL Q LSFATR++EDCPHL+ AFN+WFRRA++
Sbjct: 354 QELENLFLNIILTLPMDDAQRLLQQCLSFATRNLEDCPHLVNAFNVWFRRATQ 406


>tr|A7P917|A7P917_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036389001
           PE=4 SV=1
          Length = 488

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 38/52 (73%), Positives = 44/52 (84%)
 Frame = -2

Query: 478 ELEDVFLRIISTLPLGDAQLLLPQSLSFATRSVEDCPHLMGAFNLWFRRASR 323
           ELE++FLRIIST PL DAQ LL Q LSFATR+V+DCPHL+ AFN WF RA+R
Sbjct: 429 ELEEIFLRIISTFPLSDAQELLQQCLSFATRNVDDCPHLVTAFNTWFCRAAR 480


>tr|A5B6C7|A5B6C7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_015330 PE=4 SV=1
          Length = 686

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 38/52 (73%), Positives = 44/52 (84%)
 Frame = -2

Query: 478 ELEDVFLRIISTLPLGDAQLLLPQSLSFATRSVEDCPHLMGAFNLWFRRASR 323
           ELE++FLRIIST PL DAQ LL Q LSFATR+V+DCPHL+ AFN WF RA+R
Sbjct: 627 ELEEIFLRIISTFPLSDAQELLQQCLSFATRNVDDCPHLVTAFNTWFCRAAR 678


>tr|Q75GU4|Q75GU4_ORYSJ Os03g0723600 protein OS=Oryza sativa subsp.
           japonica GN=OJ1499_D04.14 PE=2 SV=1
          Length = 478

 Score = 77.8 bits (190), Expect = 2e-13
 Identities = 36/53 (67%), Positives = 43/53 (81%)
 Frame = -2

Query: 481 QELEDVFLRIISTLPLGDAQLLLPQSLSFATRSVEDCPHLMGAFNLWFRRASR 323
           QELE+ FL+IISTLP+ DAQ LL Q L F+TR+V+DCPHL+ AF  WFRRA R
Sbjct: 419 QELEETFLQIISTLPVPDAQELLQQCLGFSTRNVDDCPHLIAAFKTWFRRAGR 471


>tr|A3AM81|A3AM81_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_011903 PE=4 SV=1
          Length = 478

 Score = 77.8 bits (190), Expect = 2e-13
 Identities = 36/53 (67%), Positives = 43/53 (81%)
 Frame = -2

Query: 481 QELEDVFLRIISTLPLGDAQLLLPQSLSFATRSVEDCPHLMGAFNLWFRRASR 323
           QELE+ FL+IISTLP+ DAQ LL Q L F+TR+V+DCPHL+ AF  WFRRA R
Sbjct: 419 QELEETFLQIISTLPVPDAQELLQQCLGFSTRNVDDCPHLIAAFKTWFRRAGR 471


>tr|A2XLJ2|A2XLJ2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13343 PE=4 SV=1
          Length = 478

 Score = 77.8 bits (190), Expect = 2e-13
 Identities = 36/53 (67%), Positives = 43/53 (81%)
 Frame = -2

Query: 481 QELEDVFLRIISTLPLGDAQLLLPQSLSFATRSVEDCPHLMGAFNLWFRRASR 323
           QELE+ FL+IISTLP+ DAQ LL Q L F+TR+V+DCPHL+ AF  WFRRA R
Sbjct: 419 QELEETFLQIISTLPVPDAQELLQQCLGFSTRNVDDCPHLIAAFKTWFRRAGR 471


>tr|B6U150|B6U150_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 478

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 35/53 (66%), Positives = 41/53 (77%)
 Frame = -2

Query: 481 QELEDVFLRIISTLPLGDAQLLLPQSLSFATRSVEDCPHLMGAFNLWFRRASR 323
           QELE  FL+IISTLP  +AQ LL Q L F+TR+V+DCPHL+ AF  WFRRA R
Sbjct: 419 QELEGAFLQIISTLPFLEAQELLQQCLGFSTRNVDDCPHLVTAFKTWFRRAGR 471


>tr|B4FBN9|B4FBN9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 398

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = -2

Query: 481 QELEDVFLRIISTLPLGDAQLLLPQSLSFATRSVEDCPHLMGAFNLWFRRA 329
           + LE+   R I TLPL   Q L  +   F +    +CP+L+ AF +W+RR+
Sbjct: 338 RSLEENLGRGILTLPLRQQQCLFEEWFQFYSTKGAECPNLIRAFQVWWRRS 388


>tr|Q7X711|Q7X711_ORYSJ Os04g0579700 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0064M23.3 PE=4 SV=2
          Length = 533

 Score = 37.7 bits (86), Expect = 0.28
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = -2

Query: 475 LEDVFLRIISTLPLGDAQLLLPQSLSFATRSVEDCPHLMGAFNLWFRRA 329
           +ED     I TLPL   Q +L    +    S EDCP++   F +W+RRA
Sbjct: 462 IEDGLANTILTLPLATQQEILLAWFNRFLNSGEDCPNIQRGFEVWWRRA 510