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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918106
Clone id YMU001_000109_F07
Library
Length 522
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTCGCGGCCGCGAATGTCTATTTCAATCAAAACCATTGTAGGTGATTCCGTTGGCTTAA
CTAAAGTACTTCATTTGCTTGCACTAGACCATTGTAGAATTTACCACTTTCGCAATCCTA
CTCTCTTATGAGTTTCTCTAGAGTGTATCTTTAAAGTGGGTAGGAACTCCCAGATTGGTG
TCTCTCTCCCGGACTACGTGCTATGAGCTCCTTCCAAGTTTCCTCAATACCTGCTTGTAA
TCTTGGACAGGACCATAGAGCACAAATGGCAGGAATGGATAGAGCTCACAGAGCACATTA
CAAGAGCCATGGTTTAGGGATGGAGCCATCATTCATCTCTCTACACACATCACAATGCTT
TGGATGCATTATCTGATATAGTTCATCATGAATCTTTAAACCAGTTACACAGATTATTCA
TAAACGTAGCACCACATAGCCTTATCACTCATTCCCAATCTCCAACACCCAAAACAACTA
TCCGCAACATCCACAAAATACACAAGCCTGTTCCAACCCATT
■■Homology search results ■■ -
sp_hit_id Q86WI3
Definition sp|Q86WI3|NLRC5_HUMAN Protein NLRC5 OS=Homo sapiens
Align length 50
Score (bit) 30.8
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918106|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_F07.
         (504 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q86WI3|NLRC5_HUMAN Protein NLRC5 OS=Homo sapiens GN=NLRC5 PE=...    31   3.7  
sp|Q4V7E1|ELF3_RAT ETS-related transcription factor Elf-3 OS=Rat...    30   6.4  
sp|Q3UPW2|ELF3_MOUSE ETS-related transcription factor Elf-3 OS=M...    30   6.4  
sp|P78545|ELF3_HUMAN ETS-related transcription factor Elf-3 OS=H...    30   6.4  

>sp|Q86WI3|NLRC5_HUMAN Protein NLRC5 OS=Homo sapiens GN=NLRC5 PE=2
           SV=2
          Length = 1866

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 164 LSPGLRAMSSFQVSSIPACNLGQDHRAQMAGMDRAHRAHYKSHGLGMEPS 313
           L PG R M++ +   +PAC   +     M G D      Y +H    +PS
Sbjct: 336 LLPGCRVMATSRPGKLPACLPAEAAMVHMLGFDGPRVEEYVNHFFSAQPS 385


>sp|Q4V7E1|ELF3_RAT ETS-related transcription factor Elf-3 OS=Rattus
           norvegicus GN=Elf3 PE=2 SV=1
          Length = 395

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 226 KITSRY*GNLEGAHST*SGRETPIWEFLPTLKIHSRETHKRVGLRKW 86
           K++  Y   LEG  S  + R T +WEF+  + IH        GL KW
Sbjct: 276 KLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNE---GLMKW 319


>sp|Q3UPW2|ELF3_MOUSE ETS-related transcription factor Elf-3 OS=Mus
           musculus GN=Elf3 PE=1 SV=1
          Length = 391

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 226 KITSRY*GNLEGAHST*SGRETPIWEFLPTLKIHSRETHKRVGLRKW 86
           K++  Y   LEG  S  + R T +WEF+  + IH        GL KW
Sbjct: 272 KLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNE---GLMKW 315


>sp|P78545|ELF3_HUMAN ETS-related transcription factor Elf-3 OS=Homo
           sapiens GN=ELF3 PE=1 SV=1
          Length = 371

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 226 KITSRY*GNLEGAHST*SGRETPIWEFLPTLKIHSRETHKRVGLRKW 86
           K++  Y   LEG  S  + R T +WEF+  + IH        GL KW
Sbjct: 252 KLSKEYWDCLEGKKSKHAPRGTHLWEFIRDILIHPELNE---GLMKW 295
tr_hit_id A7T588
Definition tr|A7T588|A7T588_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis
Align length 58
Score (bit) 39.3
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918106|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_F07.
         (504 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7T588|A7T588_NEMVE Predicted protein (Fragment) OS=Nematoste...    39   0.11 
tr|A7T565|A7T565_NEMVE Predicted protein OS=Nematostella vectens...    39   0.14 
tr|A7S711|A7S711_NEMVE Predicted protein (Fragment) OS=Nematoste...    39   0.18 
tr|A7RGI8|A7RGI8_NEMVE Predicted protein OS=Nematostella vectens...    37   0.40 
tr|A7S9E1|A7S9E1_NEMVE Predicted protein OS=Nematostella vectens...    36   1.2  
tr|A7T563|A7T563_NEMVE Predicted protein (Fragment) OS=Nematoste...    35   1.5  
tr|A7SLB6|A7SLB6_NEMVE Predicted protein OS=Nematostella vectens...    35   2.6  
tr|B0URY2|B0URY2_HAES2 RNA-directed DNA polymerase OS=Haemophilu...    34   3.4  
tr|B0WYZ6|B0WYZ6_CULQU Negative elongation factor B OS=Culex qui...    34   3.4  
tr|A7SIR5|A7SIR5_NEMVE Predicted protein OS=Nematostella vectens...    34   3.4  
tr|A7RGI7|A7RGI7_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   3.4  
tr|Q93TW6|Q93TW6_STIAU MxaF OS=Stigmatella aurantiaca GN=mxaF PE...    33   5.8  
tr|A7T7W0|A7T7W0_NEMVE Predicted protein (Fragment) OS=Nematoste...    33   5.8  
tr|Q3K489|Q3K489_PSEPF Putative uncharacterized protein OS=Pseud...    33   7.6  
tr|B0C307|B0C307_ACAM1 Sensor protein OS=Acaryochloris marina (s...    33   7.6  
tr|Q4DZ26|Q4DZ26_TRYCR Putative uncharacterized protein OS=Trypa...    33   7.6  
tr|A8DVB5|A8DVB5_NEMVE Predicted protein OS=Nematostella vectens...    33   7.6  
tr|A8NMY9|A8NMY9_COPC7 Putative uncharacterized protein OS=Copri...    33   7.6  

>tr|A7T588|A7T588_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g222501 PE=4 SV=1
          Length = 318

 Score = 39.3 bits (90), Expect = 0.11
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 303 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIH 476
           +SHH  L T + A+  +    HH  L+  +     +  HS   H+Q  TP T I  IH
Sbjct: 155 YSHHPQLSTPYTAIHTIHSYPHHTQLSTPYTAIYTI--HSFTRHTQLSTPSTAIHTIH 210


>tr|A7T565|A7T565_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g222472 PE=4 SV=1
          Length = 164

 Score = 38.9 bits (89), Expect = 0.14
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +3

Query: 303 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIHKI 482
           + HH+ L T + A+  +    HH  L+ L+     +  HS   H+Q  TP T    IH I
Sbjct: 62  YPHHTQLSTPYTAIHTIHSYPHHTQLSMLYTAIHTI--HSYPHHTQLSTPYTPYTAIHTI 119

Query: 483 H 485
           H
Sbjct: 120 H 120



 Score = 34.3 bits (77), Expect = 3.4
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = +3

Query: 303 WSHHSSL---YTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNI 473
           + HH+ L   YT + A+  +    HH+ L+        +  H+ + HSQ  TP T I  I
Sbjct: 100 YPHHTQLSTPYTPYTAIHTIHSYPHHQQLSTPSTAMHTI--HNNLHHSQLSTPYTPIHTI 157

Query: 474 HKI-HKP 491
           H   H P
Sbjct: 158 HSYPHHP 164


>tr|A7S711|A7S711_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g207814 PE=4 SV=1
          Length = 383

 Score = 38.5 bits (88), Expect = 0.18
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 303 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIHKI 482
           +  H+ L+T + A+ A+    HH  L+  +      A H++ +H Q  TP T I  IH  
Sbjct: 158 YPRHTQLFTPYTAIHAIHSYPHHTQLSTPY-----TAIHTIHSHPQLSTPYTAIHTIHSY 212

Query: 483 -HKPVPT 500
            H P P+
Sbjct: 213 PHHPKPS 219



 Score = 33.5 bits (75), Expect = 5.8
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 309 HHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIHK 479
           HH+ L T + ++  + + +HH  L+  +     +  HS   H+   TP T I  IH+
Sbjct: 71  HHTQLSTPYTSIHTIHNHIHHTQLSTPYTAIHTI--HSYPHHTHPSTPYTAIHAIHR 125


>tr|A7RGI8|A7RGI8_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g196846 PE=4 SV=1
          Length = 405

 Score = 37.4 bits (85), Expect = 0.40
 Identities = 26/82 (31%), Positives = 36/82 (43%)
 Frame = +3

Query: 231 RTIEHKWQEWIELTEHITRAMV*GWSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINV 410
           RT   K QE  +  +H     +  + HH+ L T + A+  +    HH    QL      +
Sbjct: 12  RTRALKTQEDQQYQKHAIHT-IHSYLHHTQLSTPYTAIHTIHSYPHHTHHTQLSIAIHTI 70

Query: 411 APHSLITHSQSPTPKTTIRNIH 476
             HS   H+Q  TP TTI  IH
Sbjct: 71  --HSYPHHTQLSTPYTTIHTIH 90



 Score = 32.7 bits (73), Expect = 9.9
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 303 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTI 464
           +SH++  YT + A+  +    HH   N  +        H++ +H+Q  TP TTI
Sbjct: 105 YSHYTQPYTPYTAIHTIHSYPHHTQPNTPYTTI-----HTIHSHTQLSTPSTTI 153


>tr|A7S9E1|A7S9E1_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g208806 PE=4 SV=1
          Length = 584

 Score = 35.8 bits (81), Expect = 1.2
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +3

Query: 303 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIHKI 482
           + HH+ L T + A+  +    HH  L+  H     +  HS + H+Q   P T I   H I
Sbjct: 350 YPHHTQLSTPYTAIYTIHSYPHHTQLSTPHTAIHTI--HSYLHHTQ---PSTAIHTFHTI 404

Query: 483 H 485
           H
Sbjct: 405 H 405



 Score = 34.3 bits (77), Expect = 3.4
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +3

Query: 303 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIH 476
           + HH+ L T + A+  +   +HH  L+  +      A HS + ++Q  TP T I  IH
Sbjct: 134 YPHHTQLSTPYTAIHTIHSYLHHPQLSTPYTAI--HAIHSHLHYTQLSTPYTAIHTIH 189


>tr|A7T563|A7T563_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g222470 PE=4 SV=1
          Length = 168

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +3

Query: 303 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIH 476
           +SHH+   T + A+  +    HH  L   +     +  HS   H Q  TP TTI  IH
Sbjct: 36  YSHHTQPSTPYTAIHTIHSYPHHTQLYTPYTAIHTI--HSYSHHPQLSTPSTTIHTIH 91



 Score = 32.7 bits (73), Expect = 9.9
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 15/78 (19%)
 Frame = +3

Query: 303 WSHHSSLYTHHNALDALSDIVHHESL-----------NQLHRLFINVAPHSLIT---HSQ 440
           + HH+ LYT + A+  +    HH  L           +  H   +  A H++ +   H+Q
Sbjct: 55  YPHHTQLYTPYTAIHTIHSYSHHPQLSTPSTTIHTIHSYTHHTQLYTAIHTIHSYPHHTQ 114

Query: 441 SPTPKTTIRNIHK-IHKP 491
             TP T +  IH   H P
Sbjct: 115 LSTPYTAMHTIHSHTHHP 132


>tr|A7SLB6|A7SLB6_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g214050 PE=4 SV=1
          Length = 251

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 303 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLFINVAPHSLITHSQSPTPKTTIRNIHKI 482
           + HH+ L T + A+  +   +HH  L+  +      A H++ +H Q  T  T    IH I
Sbjct: 106 YPHHTQLSTPYTAIHTIHSYLHHTQLSTPY-----TAIHTIHSHPQLSTASTPSTAIHTI 160

Query: 483 H 485
           H
Sbjct: 161 H 161


>tr|B0URY2|B0URY2_HAES2 RNA-directed DNA polymerase OS=Haemophilus
           somnus (strain 2336) GN=HSM_0539 PE=4 SV=1
          Length = 575

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 300 GWSHHSSLYTHHNALDALSD--IVHHESLNQLHRLFINVA 413
           GW  H  +Y  +   D+L++  +VH E   Q+HRL +NVA
Sbjct: 532 GWHDHHIIYKMYGGTDSLNNRCLVHPECHQQIHRLNLNVA 571


>tr|B0WYZ6|B0WYZ6_CULQU Negative elongation factor B OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ012256 PE=4 SV=1
          Length = 590

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
 Frame = +3

Query: 267 LTEHITRAMV*GWSHHSSLYTHHNALDALSDIV-----HHESLNQLHRLFINVAPHSLIT 431
           +T H+ + +   W  H  L   H  L  L   +     HHE++   H+L+ ++    ++ 
Sbjct: 508 VTRHMLKLL---WYVHQKLPQRHGRLQTLMKALQPNAQHHENV---HKLYESLQKRVMVA 561

Query: 432 HSQSPTPKTTIRNIHKIHKPVPT 500
           H+Q P P+    +     K VPT
Sbjct: 562 HAQEPVPEPMETDFDSPLKSVPT 584


>tr|A7SIR5|A7SIR5_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g212904 PE=4 SV=1
          Length = 385

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +3

Query: 303 WSHHSSLYTHHNALDALSDIVHHESLNQLHRLF--INVAPH--SLITHSQSPTPKTTIRN 470
           + HH+ L T +  +  +    HH  L+  +     I+  PH   L TH+Q  TP T I  
Sbjct: 67  YPHHTQLSTPYTGIHTIHRYPHHTQLSTPYTAIHTIHSYPHHTQLSTHTQVSTPYTGIHT 126

Query: 471 IHK 479
           IH+
Sbjct: 127 IHR 129