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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918107
Clone id YMU001_000109_F08
Library
Length 471
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACTGGAAGAATTCGCGGCTCCTCGGGAATGGCGACCCTGTGGGAGTACTAGACTCAACC
TGTAGCCGAGAGTCAAAACTGGAAGCTCCAAATGGCCGAGCACACAGCAACTCAAGACCA
AAAAAGCAGAGCAAAACATGCTCACAATGCACCACCCAAAAGGAGAAACACTGCACACAA
ATCCTGAGTGCTATAAGCAAGTGCGATCTCGATCGCACCAACAATGCGCATACAACTCCT
GGGAAAATTTTGCCAAAGTTTTGTCAGTAAAACGGCCACAAAACCAGTAACCAAACTGAC
TAGCACGCTCAAAAACATGAGCAAACAAATGCGCATCAAACCGCACTCTAAATGCATGCA
CCAATCTCCACACTTTGCATACATCATTGCAAACACCTGCAAATCTAGTACACAAATATC
TGCTCTACCTGTGACTGCCCAAAAAACTGCGTCTCTCAAGAGACCGCTTCG
■■Homology search results ■■ -
sp_hit_id P29258
Definition sp|P29258|STP2_PIG Nuclear transition protein 2 OS=Sus scrofa
Align length 92
Score (bit) 33.9
E-value 0.33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918107|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_F08.
         (452 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P29258|STP2_PIG Nuclear transition protein 2 OS=Sus scrofa GN...    34   0.33 
sp|Q9N1A4|STP2_PONPY Nuclear transition protein 2 (Fragment) OS=...    33   0.74 
sp|O77645|STP2_CANFA Nuclear transition protein 2 OS=Canis famil...    33   0.74 
sp|Q54IL7|P5CR1_DICDI Pyrroline-5-carboxylate reductase 1 OS=Dic...    32   0.97 
sp|Q9N1A3|STP2_MACMU Nuclear transition protein 2 (Fragment) OS=...    32   1.7  
sp|Q99MR9|PPR3A_MOUSE Protein phosphatase 1 regulatory subunit 3...    32   1.7  
sp|Q8IUB3|WF10B_HUMAN Protein WFDC10B OS=Homo sapiens GN=WFDC10B...    31   2.2  
sp|P52743|ZN137_HUMAN Zinc finger protein 137 OS=Homo sapiens GN...    31   2.8  
sp|P30658|CBX2_MOUSE Chromobox protein homolog 2 OS=Mus musculus...    31   2.8  
sp|Q14781|CBX2_HUMAN Chromobox protein homolog 2 OS=Homo sapiens...    30   3.7  
sp|Q9HCK1|ZDBF2_HUMAN DBF4-type zinc finger-containing protein 2...    30   4.8  
sp|Q81487|POLG_HCVTR Genome polyprotein OS=Hepatitis C virus gen...    30   6.3  
sp|B2A454|RS18_NATTJ 30S ribosomal protein S18 OS=Natranaerobius...    29   8.2  
sp|Q6HAN0|META_BACHK Homoserine O-succinyltransferase OS=Bacillu...    29   8.2  
sp|A0RLI8|META_BACAH Homoserine O-succinyltransferase OS=Bacillu...    29   8.2  

>sp|P29258|STP2_PIG Nuclear transition protein 2 OS=Sus scrofa
           GN=TNP2 PE=2 SV=1
          Length = 137

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = +3

Query: 45  SRESKLEAPNGRAHSNSRPKKQSKTCSQCTTQKE-KHCTQILSAISKCDLDRTNNAHTTP 221
           ++   L   + + HSNS P  QS  C+QC+     ++C+Q       C   R+++   T 
Sbjct: 3   TKTQSLPNAHTQPHSNSGP--QSHACNQCSCSHHCQNCSQSCDRSQSCSRSRSSSQSPTG 60

Query: 222 GKILPKFCQ*NGHKTSNQTD*HAQKHEQTNAH 317
            + LP      GH++ + +   + +H +   H
Sbjct: 61  HRSLP------GHQSQSLSPSPSPRHRKRAMH 86


>sp|Q9N1A4|STP2_PONPY Nuclear transition protein 2 (Fragment)
           OS=Pongo pygmaeus GN=TNP2 PE=2 SV=1
          Length = 138

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 7/135 (5%)
 Frame = +3

Query: 45  SRESKLEAPNGRAHSNSRPKKQSKTCSQCTTQKEKH-----CTQILSAISKCDLDRTNNA 209
           ++   L   + + HSNS+P  QS+TCS CT  + +      C Q        +  ++  +
Sbjct: 3   TKTHSLPITHTQLHSNSQP--QSRTCSPCTCTRHRQTFSQSCRQSQRGSWSQNSSQSPAS 60

Query: 210 HTTPGKILPKFCQ*NGHKTSNQTD*HAQK-HEQT-NAHQTAL*MHAPISTLCIHHCKHLQ 383
           H  P          +GH++ +  D    K H++T N+H      H+P     +H      
Sbjct: 61  HHNPTGAHSS----SGHQSQSPNDSPPPKRHKKTMNSH------HSPTRPTILH------ 104

Query: 384 I*YTNICSTCDCPKN 428
                    C CPKN
Sbjct: 105 ---------CSCPKN 110


>sp|O77645|STP2_CANFA Nuclear transition protein 2 OS=Canis
           familiaris GN=TNP2 PE=2 SV=1
          Length = 129

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 34/128 (26%), Positives = 47/128 (36%)
 Frame = +3

Query: 45  SRESKLEAPNGRAHSNSRPKKQSKTCSQCTTQKEKHCTQILSAISKCDLDRTNNAHTTPG 224
           ++   L   + + HSNSRP  Q  TCSQCT     HC    +    C   R+++   T  
Sbjct: 3   TKTQSLPITHTQPHSNSRP--QGHTCSQCTC--SSHCQ---TCSQSCSQSRSSSQSPT-- 53

Query: 225 KILPKFCQ*NGHKTSNQTD*HAQKHEQTNAHQTAL*MHAPISTLCIHHCKHLQI*YTNIC 404
                     GH +S+        H+  + H T    H    T   HHC           
Sbjct: 54  ----------GHHSSS-------GHQSQSPHPTLPPRHQK-HTRHSHHCPP-----RPTT 90

Query: 405 STCDCPKN 428
            +C  PKN
Sbjct: 91  HSCSYPKN 98


>sp|Q54IL7|P5CR1_DICDI Pyrroline-5-carboxylate reductase 1
           OS=Dictyostelium discoideum GN=pycr1 PE=3 SV=1
          Length = 551

 Score = 32.3 bits (72), Expect = 0.97
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 86  QQLKTKKAEQNMLTMHHPKGETLHTN-PECYKQVRSRSHQQCAYNSWENF 232
           QQLK ++ +Q+    H    + +    P  Y+Q + +SHQQ  YN   N+
Sbjct: 290 QQLKQQQHQQHQHQQHQQHQQQVQQQEPHQYQQQQQQSHQQSQYNQGHNY 339


>sp|Q9N1A3|STP2_MACMU Nuclear transition protein 2 (Fragment)
           OS=Macaca mulatta GN=TNP2 PE=2 SV=1
          Length = 137

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 45  SRESKLEAPNGRAHSNSRPKKQSKTCSQCT 134
           ++   L   + + HSNSRP  QS+TCSQCT
Sbjct: 3   TKTHSLPITHTQLHSNSRP--QSRTCSQCT 30


>sp|Q99MR9|PPR3A_MOUSE Protein phosphatase 1 regulatory subunit 3A
           OS=Mus musculus GN=Ppp1r3a PE=1 SV=1
          Length = 1089

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 3   LGNGDPVGVL-DSTCSRESKLEAPNGRAHSNSRPKKQSKTCSQCTTQKEKHCTQILSAIS 179
           L +GD  GV+ D+   RES L+  N R     + K  S    Q T  KEKH    +++I 
Sbjct: 764 LCHGDTAGVIHDNDFERESHLDICNLRVDEMKKEKTTSTCFPQKTYDKEKHGIGSVTSID 823

Query: 180 KCDLDRTNNAHTT 218
           +     T N   T
Sbjct: 824 EPSQVITGNQKAT 836


>sp|Q8IUB3|WF10B_HUMAN Protein WFDC10B OS=Homo sapiens GN=WFDC10B
           PE=2 SV=2
          Length = 73

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 342 PISTLCIHHCKHLQI*YTN-ICSTCDCPKNCVS 437
           P   LCIHHC + Q   TN IC +  C   C+S
Sbjct: 39  PSIDLCIHHCSYFQKCETNKICCSAFCGNICMS 71


>sp|P52743|ZN137_HUMAN Zinc finger protein 137 OS=Homo sapiens
           GN=ZNF137 PE=2 SV=1
          Length = 207

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 11/47 (23%)
 Frame = -2

Query: 211 CALLVRSRSHLLIALRI--------CVQC---FSFWVVHCEHVLLCF 104
           C  ++ SRSHL+   RI        C++C   FS W +H EH  + F
Sbjct: 161 CGKVLTSRSHLIRHQRIHTGQKSYKCLKCGKVFSLWALHAEHQKIHF 207


>sp|P30658|CBX2_MOUSE Chromobox protein homolog 2 OS=Mus musculus
           GN=Cbx2 PE=1 SV=1
          Length = 519

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 36  STCSRESKLEAPNGRAHSNSRPKKQSKTCSQCTTQKEK 149
           S+CSR SKL+ P+  + S S     S T S  ++ +E+
Sbjct: 87  SSCSRRSKLKEPDAPSKSKSSSSSSSSTSSSSSSDEEE 124


>sp|Q14781|CBX2_HUMAN Chromobox protein homolog 2 OS=Homo sapiens
           GN=CBX2 PE=1 SV=2
          Length = 532

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 36  STCSRESKLEAPNGRAHSNSRPKKQSKTCSQCTTQKE 146
           S+CSR SKL+ P+  + S S     S T S  ++ +E
Sbjct: 87  SSCSRRSKLKEPDAPSKSKSSSSSSSSTSSSSSSDEE 123
tr_hit_id Q22P03
Definition tr|Q22P03|Q22P03_TETTH Putative uncharacterized protein OS=Tetrahymena thermophila SB210
Align length 129
Score (bit) 42.4
E-value 0.012
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918107|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_F08.
         (452 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q22P03|Q22P03_TETTH Putative uncharacterized protein OS=Tetra...    42   0.012
tr|Q3APT7|Q3APT7_CHLCH Putative uncharacterized protein OS=Chlor...    38   0.22 
tr|B6MGL9|B6MGL9_BRAFL Putative uncharacterized protein OS=Branc...    37   0.49 
tr|Q0UPM3|Q0UPM3_PHANO Putative uncharacterized protein OS=Phaeo...    35   1.9  
tr|B6LUT6|B6LUT6_BRAFL Putative uncharacterized protein OS=Branc...    34   4.2  
tr|B6P3S1|B6P3S1_BRAFL Putative uncharacterized protein OS=Branc...    33   5.5  
tr|B4QJ68|B4QJ68_DROSI GD12163 OS=Drosophila simulans GN=GD12163...    33   5.5  
tr|B4IAF4|B4IAF4_DROSE GM22188 OS=Drosophila sechellia GN=GM2218...    33   5.5  
tr|Q9VPB7|Q9VPB7_DROME CG11399 OS=Drosophila melanogaster GN=CG1...    33   9.3  
tr|Q960B9|Q960B9_DROME SD08128p OS=Drosophila melanogaster GN=CG...    33   9.3  
tr|Q95T03|Q95T03_DROME LD30158p OS=Drosophila melanogaster GN=CG...    33   9.3  
tr|Q29IL7|Q29IL7_DROPS GA18237 OS=Drosophila pseudoobscura pseud...    33   9.3  
tr|B4H2P3|B4H2P3_DROPE GL26753 OS=Drosophila persimilis GN=GL267...    33   9.3  

>tr|Q22P03|Q22P03_TETTH Putative uncharacterized protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_00417900 PE=4
            SV=1
          Length = 3684

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 12/129 (9%)
 Frame = +3

Query: 87   SNSRPKKQSKTCSQCTTQKEKHCTQILSAISKCDL-----------DRTNNAHTTPGKIL 233
            SN+   K +K C++C+  K K C   L + + C+            D+ NN +    KI 
Sbjct: 2890 SNTYCDKVTKICTKCSNDKCKECDNNLKSCTSCNSNQYFYNSECYEDKPNNTYCDNLKIC 2949

Query: 234  PKFCQ*NGHKTSNQTD*HAQKHEQTNAHQTAL*MHAPISTLCIHHCKHLQI*YTNICSTC 413
             K    N        +   + ++QT  H+       P +T C +  K  ++   N C TC
Sbjct: 2950 KKCKDENCQSCDENLEKCFKCYKQTYIHEQKCYQQQPNNTFC-NQSKECKLCLNNNCKTC 3008

Query: 414  DCP-KNCVS 437
            D    +CVS
Sbjct: 3009 DFNLTDCVS 3017


>tr|Q3APT7|Q3APT7_CHLCH Putative uncharacterized protein
           OS=Chlorobium chlorochromatii (strain CaD3) GN=Cag_1737
           PE=4 SV=1
          Length = 498

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 53  VKTGSSKWPSTQQLKTKKAEQNMLTMHHPKGET--LHTNPECYKQVRSRSHQQCAYNS 220
           + +G+ ++P   Q  T K  +NM T+HHP GE        +  K  R RSH+ C +N+
Sbjct: 202 LSSGTQRYPV--QPPTSKTFENMTTLHHPLGEVFGFAATDQSPKAQRYRSHRHCPFNN 257


>tr|B6MGL9|B6MGL9_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_82150 PE=4 SV=1
          Length = 224

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 27/78 (34%), Positives = 36/78 (46%)
 Frame = +3

Query: 78  RAHSNSRPKKQSKTCSQCTTQKEKHCTQILSAISKCDLDRTNNAHTTPGKILPKFCQ*NG 257
           R H+  RP K    C QC            SAI KCDLD+    HT    + P  C   G
Sbjct: 88  RTHTGERPYK----CDQCD----------YSAIQKCDLDKHLAIHT---GVKPHTCGECG 130

Query: 258 HKTSNQTD*HAQKHEQTN 311
           ++TSN++  H   H +T+
Sbjct: 131 YRTSNKS--HLSVHMRTH 146


>tr|Q0UPM3|Q0UPM3_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_06291 PE=4 SV=1
          Length = 439

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 21/74 (28%), Positives = 39/74 (52%)
 Frame = +1

Query: 199 PTMRIQLLGKFCQSFVSKTATKPVTKLTSTLKNMSKQMRIKPHSKCMHQSPHFAYIIANT 378
           PT+ + +   F Q+  +K  T PVT+L + ++N +    I   S     S   +YI +NT
Sbjct: 255 PTIVVNITKTF-QATTTKAVTSPVTRLHTAVENTTTTQTITTTSTSTLTSTVTSYITSNT 313

Query: 379 CKSSTQISALPVTA 420
            ++ST  +++  T+
Sbjct: 314 TRTSTLTTSIIATS 327


>tr|B6LUT6|B6LUT6_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_74799 PE=4 SV=1
          Length = 624

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 24/67 (35%), Positives = 30/67 (44%)
 Frame = +3

Query: 78  RAHSNSRPKKQSKTCSQCTTQKEKHCTQILSAISKCDLDRTNNAHTTPGKILPKFCQ*NG 257
           R H+  RP K    C QC            SAI KCDLD+    HT    + P  C   G
Sbjct: 295 RTHTGERPYK----CDQCD----------YSAIQKCDLDKHLAIHT---GVKPYTCGECG 337

Query: 258 HKTSNQT 278
           + TSN++
Sbjct: 338 YSTSNKS 344


>tr|B6P3S1|B6P3S1_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_61725 PE=4 SV=1
          Length = 504

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 24/79 (30%), Positives = 37/79 (46%)
 Frame = +3

Query: 78  RAHSNSRPKKQSKTCSQCTTQKEKHCTQILSAISKCDLDRTNNAHTTPGKILPKFCQ*NG 257
           R+HS  +P K    C +C            SA+ KCDLD+    HT      P  C   G
Sbjct: 346 RSHSGEKPYK----CDKCD----------YSAVQKCDLDKHLATHTGE---KPYMCVECG 388

Query: 258 HKTSNQTD*HAQKHEQTNA 314
           H+T+ ++  +  KH +T++
Sbjct: 389 HRTARKS--NLYKHMRTHS 405


>tr|B4QJ68|B4QJ68_DROSI GD12163 OS=Drosophila simulans GN=GD12163 PE=4
            SV=1
          Length = 920

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 25/100 (25%), Positives = 43/100 (43%)
 Frame = +1

Query: 112  AKHAHNAPPKRRNTAHKS*VLXXXXXXXXPTMRIQLLGKFCQSFVSKTATKPVTKLTSTL 291
            ++H+ + PP   +TA  +            +  I  +     S  + T+T     LT+T 
Sbjct: 759  SQHSPSTPPSAASTAPTT-----------NSSTISGVNSNSSSTATTTSTSSSPSLTTTS 807

Query: 292  KNMSKQMRIKPHSKCMHQSPHFAYIIANTCKSSTQISALP 411
             +MS    + PH+   +  P F   I+NT  SS  ++A P
Sbjct: 808  SSMSP---LSPHTPTGNPPPQFPMTISNTSSSSNLVAASP 844


>tr|B4IAF4|B4IAF4_DROSE GM22188 OS=Drosophila sechellia GN=GM22188
            PE=4 SV=1
          Length = 920

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 25/100 (25%), Positives = 43/100 (43%)
 Frame = +1

Query: 112  AKHAHNAPPKRRNTAHKS*VLXXXXXXXXPTMRIQLLGKFCQSFVSKTATKPVTKLTSTL 291
            ++H+ + PP   +TA  +            +  I  +     S  + T+T     LT+T 
Sbjct: 759  SQHSPSTPPSAASTAPTT-----------NSSTISGVNSNSSSTATTTSTSSSPSLTTTS 807

Query: 292  KNMSKQMRIKPHSKCMHQSPHFAYIIANTCKSSTQISALP 411
             +MS    + PH+   +  P F   I+NT  SS  ++A P
Sbjct: 808  SSMSP---LSPHTPTGNPPPQFPMTISNTSSSSNLVAASP 844


>tr|Q9VPB7|Q9VPB7_DROME CG11399 OS=Drosophila melanogaster
           GN=CG11399 PE=2 SV=1
          Length = 920

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +1

Query: 238 SFVSKTATKPVTKLTSTLKNMSKQMRIKPHSKCMHQSPHFAYIIANTCKSSTQISALP 411
           S  + T+T     LT+T  +MS    + PH+   +  P F   I+NT  SS  ++A P
Sbjct: 790 STATTTSTSSSPSLTTTSSSMSP---LSPHTPTGNPPPQFPMTISNTSSSSNLVAASP 844


>tr|Q960B9|Q960B9_DROME SD08128p OS=Drosophila melanogaster
           GN=CG11399 PE=2 SV=1
          Length = 920

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +1

Query: 238 SFVSKTATKPVTKLTSTLKNMSKQMRIKPHSKCMHQSPHFAYIIANTCKSSTQISALP 411
           S  + T+T     LT+T  +MS    + PH+   +  P F   I+NT  SS  ++A P
Sbjct: 790 STATTTSTSSSPSLTTTSSSMSP---LSPHTPTGNPPPQFPMTISNTSSSSNLVAASP 844