NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918113
Clone id YMU001_000109_G02
Library
Length 426
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAAGTAACATAGGGTACTTACACGGCGCTGATCACTCACTCATGGGTACACAAACCCAC
TATCCCTCACCTCACGACATTCGCGGATCTCCTCAATTTGATTTTGAAGCAGGCGCTTTC
TTCAATCCAAGCAGCTTCTCTTCCTCAACATCACCTCAGCTGCCATCGCTAGTCACTCTG
CAAAACCCGGCAAAGCGCTCGCCGCTTGTGGACGAGATTGCAAATTTCACTGCTGCAACA
ACGCGTGAGGAGGGCAATGTCGCAGATGACTCTTTTACTGGCTTGCCTGCTCTGATAAGT
GCAGAATCTTCCTTGCCCTTCACTCTTCTTTCCCGTCCCTCTCCCCAAAAGCCCACTTCA
TTGATACATTTCTTCACTAAATGAGATAAATTAGGTTAAGGTATGCATTTGTATGCACCT
TTTGAG
■■Homology search results ■■ -
sp_hit_id Q0BHU5
Definition sp|Q0BHU5|HBOH_BURCM D-(-)-3-hydroxybutyrate oligomer hydrolase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD)
Align length 52
Score (bit) 31.2
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918113|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_G02.
         (426 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0BHU5|HBOH_BURCM D-(-)-3-hydroxybutyrate oligomer hydrolase ...    31   1.8  
sp|Q9L1B1|ARLY_STRCO Argininosuccinate lyase OS=Streptomyces coe...    30   4.1  
sp|A4JBY8|HBOH_BURVG D-(-)-3-hydroxybutyrate oligomer hydrolase ...    30   5.3  
sp|Q39J35|HBOH_BURS3 D-(-)-3-hydroxybutyrate oligomer hydrolase ...    30   5.3  
sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1    29   8.8  
sp|P05892|GAG_SIVVT Gag polyprotein OS=Simian immunodeficiency v...    29   8.8  
sp|Q96J86|CYYR1_HUMAN Cysteine and tyrosine-rich protein 1 OS=Ho...    29   8.8  
sp|Q2SYN3|HBOH_BURTA D-(-)-3-hydroxybutyrate oligomer hydrolase ...    29   9.1  

>sp|Q0BHU5|HBOH_BURCM D-(-)-3-hydroxybutyrate oligomer hydrolase
           OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD)
           GN=Bamb_0719 PE=3 SV=1
          Length = 695

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 172 VTLQNPAKRSPLVDEIANFTAATT-REEGNVADDSFTGLPALISAESSLPFT 324
           VT  N   RS + D + NF+ ATT    G VA  + + +PA+    + +P T
Sbjct: 454 VTYANAYTRSRVTDNLCNFSFATTSAPTGTVASPAASPMPAIFGVGNGVPPT 505


>sp|Q9L1B1|ARLY_STRCO Argininosuccinate lyase OS=Streptomyces
           coelicolor GN=argH PE=3 SV=1
          Length = 475

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +1

Query: 211 DEIANFTAATTREEGNVADDSFTGLPALISAESSLPFTLLSRPSP 345
           DE+    A   R E +VAD SFTG  A     ++L   LL R  P
Sbjct: 60  DELTRMIAGLDRLEADVADGSFTGTIADEDVHTALERGLLERLGP 104


>sp|A4JBY8|HBOH_BURVG D-(-)-3-hydroxybutyrate oligomer hydrolase
           OS=Burkholderia vietnamiensis (strain G4 / LMG 22486)
           GN=Bcep1808_0779 PE=3 SV=1
          Length = 696

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 172 VTLQNPAKRSPLVDEIANFTAATTR-EEGNVADDSFTGLPALISAESSLPFT 324
           VT  N   RS + D + NF+ ATT    G VA  + + +PA+    + +P T
Sbjct: 455 VTYANAYTRSSVADNLCNFSFATTNAATGAVAAPAASPMPAVFGLGNGVPPT 506


>sp|Q39J35|HBOH_BURS3 D-(-)-3-hydroxybutyrate oligomer hydrolase
           OS=Burkholderia sp. (strain 383) GN=Bcep18194_A3932 PE=3
           SV=1
          Length = 696

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 172 VTLQNPAKRSPLVDEIANFTAATTR-EEGNVADDSFTGLPALISAESSLPFT 324
           VT  N   RS + D + NF+ ATT    G VA  + + +PA+    + +P T
Sbjct: 455 VTYANAYTRSRVTDNLCNFSFATTNPATGAVAAPATSPMPAVFGVGNGVPPT 506


>sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1
          Length = 5255

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 144  LNITSAAIASHSAKPGKALAACGRDCKFHCCNNA*GGQCR 263
            L++ +A     S  PG AL  C   C  HC +   G  CR
Sbjct: 4122 LHLCNAQPCDDSCPPGMALVTCANHCPRHCGDLQEGIVCR 4161


>sp|P05892|GAG_SIVVT Gag polyprotein OS=Simian immunodeficiency
           virus agm.vervet (isolate AGM TYO-1) GN=gag PE=3 SV=1
          Length = 519

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 410 KCIP*PNLSHLVKKCINEVGFWGEGRERRVKGKEDSALIRAGKP 279
           KC+    L HL K C  +V F G GR    K +   A     +P
Sbjct: 419 KCLKCGKLGHLAKDCRGQVNFLGYGRWMGAKPRNFPAATLGAEP 462


>sp|Q96J86|CYYR1_HUMAN Cysteine and tyrosine-rich protein 1 OS=Homo
           sapiens GN=CYYR1 PE=2 SV=1
          Length = 154

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 198 LAACGRDCKFHCCN 239
           LA CG+DCK +CC+
Sbjct: 28  LAQCGKDCKSYCCD 41


>sp|Q2SYN3|HBOH_BURTA D-(-)-3-hydroxybutyrate oligomer hydrolase
           OS=Burkholderia thailandensis (strain E264 / ATCC 700388
           / DSM 13276 / CIP 106301) GN=BTH_I1420 PE=3 SV=1
          Length = 698

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 172 VTLQNPAKRSPLVDEIANFTAATTRE-EGNVADDSFTGLPALISAESSLPFT 324
           VT  N   RS + D + NF+ ATT    G VA  + + + +L  A + +P T
Sbjct: 456 VTYANAYTRSRVTDNLCNFSFATTNSVTGAVAPPATSPMTSLFGAGNGVPPT 507
tr_hit_id Q6BJV7
Definition tr|Q6BJV7|Q6BJV7_DEBHA DEHA2F27038p OS=Debaryomyces hansenii
Align length 65
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918113|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_G02.
         (426 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6BJV7|Q6BJV7_DEBHA DEHA2F27038p OS=Debaryomyces hansenii GN=...    35   2.4  

>tr|Q6BJV7|Q6BJV7_DEBHA DEHA2F27038p OS=Debaryomyces hansenii
           GN=DEHA2F27038g PE=4 SV=2
          Length = 724

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 180 AKPGKALAACG--RDCKFHCCNNA*GGQCRR*LFYWLACSDKCRIFLALHSSFPSLSPKA 353
           +K  ++  AC   R+CK  C NN  G QC+R     L+CS   +       S P + P  
Sbjct: 5   SKKNRSSVACNVCRECKLRCNNNNDGSQCQRCDSLKLSCSYTLKKSQIHKKSLPKIRPTL 64

Query: 354 HFIDT 368
              DT
Sbjct: 65  RNADT 69