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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918116
Clone id YMU001_000109_G05
Library
Length 461
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCGAGAGAGAGAGGGGATTTCGTTTGGCTGCAGCAATGCGCAAATCACATAC
TAATATATATAGTGAGCAAGCTTAGAAAGTGTGACCATAAAATGCACTTTAACATGTCAA
GGAAGAACCATAAAGTTTATAACATTTATCTATGTGTCACCTGTGTGGGGATCTCACAAA
GCCTACCATAGGTGCATCTCTAGCTAGTTGCAACAACTTATTGTTGGGTGGGGGCCCCTA
TTGGAGGGTTTTCTAGAGAACCATATCGACCTTGCGGCGGGTGGCGCATTGGGTTATATA
GGCGTTGCATCCCTTGTTGAGGGGTTGCAAAAGGCTATGGAGATAGGTTATGTCGTGGAG
GGGGCAACCAACTATCTCTTTCTTCTTTGATAGTGCTTGGGGACGAAGATCTGGCTTATT
TTTGCTTGCAAAGGAGACCTTCCCTCACGCTCCCCCTTGGG
■■Homology search results ■■ -
sp_hit_id Q5KJI2
Definition sp|Q5KJI2|DHH1_CRYNE ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans
Align length 61
Score (bit) 35.8
E-value 0.091
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918116|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_G05.
         (461 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5KJI2|DHH1_CRYNE ATP-dependent RNA helicase DHH1 OS=Cryptoco...    36   0.091
sp|Q9EQG3|SCEL_MOUSE Sciellin OS=Mus musculus GN=Scel PE=2 SV=2        34   0.27 
sp|Q58Z64|DHH1_CRYNV ATP-dependent RNA helicase VAD1 OS=Cryptoco...    34   0.35 
sp|Q54HX8|LITAH_DICDI Protein LITAF homolog OS=Dictyostelium dis...    32   1.7  
sp|P24639|ANXA7_DICDI Annexin A7 OS=Dictyostelium discoideum GN=...    31   2.9  
sp|Q5ZJ07|CCD61_CHICK Coiled-coil domain-containing protein 61 O...    26   3.8  
sp|Q1DX43|SEC31_COCIM Protein transport protein SEC31 OS=Coccidi...    30   3.8  
sp|P04474|PRP3_RAT Acidic proline-rich protein PRP33 OS=Rattus n...    30   3.8  
sp|Q31GZ1|MURA_THICR UDP-N-acetylglucosamine 1-carboxyvinyltrans...    30   3.8  
sp|Q2UCB7|MCA1B_ASPOR Metacaspase-1B OS=Aspergillus oryzae GN=ca...    30   3.8  
sp|Q9Y6Y8|S23IP_HUMAN SEC23-interacting protein OS=Homo sapiens ...    30   5.0  
sp|A1CL82|MCA1B_ASPCL Metacaspase-1B OS=Aspergillus clavatus GN=...    30   5.0  
sp|Q6ZUX7|LHPL2_HUMAN Lipoma HMGIC fusion partner-like 2 protein...    30   5.0  
sp|Q4P7Q1|VPS27_USTMA Vacuolar protein sorting-associated protei...    30   6.5  
sp|Q8LCL8|U647B_ARATH UPF0467 protein B OS=Arabidopsis thaliana ...    30   6.5  
sp|O95171|SCEL_HUMAN Sciellin OS=Homo sapiens GN=SCEL PE=1 SV=2        30   6.5  
sp|Q8KA20|RNFB_BUCAP Electron transport complex protein rnfB OS=...    30   6.5  
sp|A1WJY8|AROE_VEREI Shikimate dehydrogenase OS=Verminephrobacte...    30   6.5  

>sp|Q5KJI2|DHH1_CRYNE ATP-dependent RNA helicase DHH1
           OS=Cryptococcus neoformans GN=DHH1 PE=3 SV=1
          Length = 625

 Score = 35.8 bits (81), Expect = 0.091
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -2

Query: 403 SPSTIKEERDSWLPPPRHNLSP*PFATPQQGMQRLYNPMRHPPQGRYGSLENPPIGAPTQ 224
           +P+ ++EER+S  PPP+    P   A P    Q      +HPP   + + +  P  AP Q
Sbjct: 411 APAMVEEERES--PPPK----PAAIAAPPAQQQPQQRQRQHPPVPSHQAAQQSPAAAPVQ 464

Query: 223 Q 221
           Q
Sbjct: 465 Q 465


>sp|Q9EQG3|SCEL_MOUSE Sciellin OS=Mus musculus GN=Scel PE=2 SV=2
          Length = 652

 Score = 34.3 bits (77), Expect = 0.27
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
 Frame = -2

Query: 415 ARSSSPST--IKEERDSWL--PPPRHNLSP*PFATPQQGMQRLYNPMRHPPQGRYGSLEN 248
           A +S+P+T  +K++R SW   PPP HN SP   A+ +     L+ P+  PP+        
Sbjct: 121 ATASTPATTPVKKKRQSWFPPPPPGHNASPSTAASRRD--PALHPPL--PPKPCSPIASP 176

Query: 247 PPIGAPTQQ*VVATS*RC 194
            P+G   +Q   AT+  C
Sbjct: 177 KPLGRTNRQIHAATAGAC 194


>sp|Q58Z64|DHH1_CRYNV ATP-dependent RNA helicase VAD1
           OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1
          Length = 616

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -2

Query: 403 SPSTIKEERDSWLPPPRHNLSP*PFATPQQGMQRLYNPMRHPPQGRYGSLENPPIGAPTQ 224
           +P+ ++EER+S  PPP+    P   A P    Q      +HPP   +    + P  AP Q
Sbjct: 411 APAMVEEERES--PPPK----PAAIAAPPAQQQPQQRQRQHPPVPSHQVAHHSPAAAPIQ 464

Query: 223 Q 221
           Q
Sbjct: 465 Q 465


>sp|Q54HX8|LITAH_DICDI Protein LITAF homolog OS=Dictyostelium
           discoideum GN=litaf PE=3 SV=1
          Length = 181

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
 Frame = -2

Query: 406 SSPSTIKEERDSWLP---------PPRHNLSP*PFATPQQGMQRLYNPMRHPPQGRYGSL 254
           SSP   ++++  + P         PP+    P  +  PQQG    Y P ++PPQ  Y   
Sbjct: 16  SSPPQEQQQQQQYPPQGYPQQQQYPPQQGYPPQQYP-PQQG----YPPQQYPPQQGYPQQ 70

Query: 253 ENP-----PIGAPTQ 224
           + P     P+GAP Q
Sbjct: 71  QPPQQYPAPVGAPQQ 85


>sp|P24639|ANXA7_DICDI Annexin A7 OS=Dictyostelium discoideum
           GN=nxnA PE=1 SV=1
          Length = 462

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 361 PPRHNLSP*PFATPQQGM--QRLYNPMRHPPQGRYGSLENPPIGAP 230
           PP+    P     PQQG   Q+ Y P  +PPQ  Y     PP+G P
Sbjct: 95  PPQQGYPPQQGYPPQQGYPPQQGYPPQGYPPQQGY-----PPVGVP 135


>sp|Q5ZJ07|CCD61_CHICK Coiled-coil domain-containing protein 61
           OS=Gallus gallus GN=CCDC61 PE=2 SV=1
          Length = 403

 Score = 26.2 bits (56), Expect(2) = 3.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 460 PRGSVREGLLCKQK*ARSSSPSTIKEERDS 371
           PRG+V  G  C+++  RSSS  +++  R +
Sbjct: 293 PRGTVSSGDNCRRRGRRSSSAESLQSRRSA 322



 Score = 23.1 bits (48), Expect(2) = 3.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 386 RRKR*LVAPSTT*PISIAFCNPST 315
           +R+R L  PST  P+S + CN ++
Sbjct: 334 QRRRGLGGPSTRSPLSASSCNSTS 357


>sp|Q1DX43|SEC31_COCIM Protein transport protein SEC31 OS=Coccidioides
            immitis GN=SEC31 PE=3 SV=1
          Length = 1261

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -2

Query: 409  SSSPSTIKEERDSWLPPPRHNLSP*PFATPQ-QGMQRLYNPMRHPPQGRYGSLENPPIGA 233
            S  PST+   RDS  PPP    +P   A+P   G+     P   PP   +  + +PP+  
Sbjct: 975  SPPPSTMPAPRDSVPPPPPKGPAPPRMASPSTAGIPHGLQPAERPPSRTH--VYSPPLAQ 1032

Query: 232  PT 227
             T
Sbjct: 1033 QT 1034


>sp|P04474|PRP3_RAT Acidic proline-rich protein PRP33 OS=Rattus
           norvegicus GN=Prpg1 PE=2 SV=1
          Length = 206

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
 Frame = -2

Query: 364 PPPRHNLSP*PFATPQQGMQRLYNPMRHPPQG------RYGSLEN-PPIGAPTQQ 221
           PPP H+  P P   PQ   Q   NP   PPQG      + G+ +  PP G P Q+
Sbjct: 90  PPPGHHHGPPPSGGPQTSSQP-GNPQGPPPQGGPQGPPQPGNPQGPPPQGGPQQR 143


>sp|Q31GZ1|MURA_THICR UDP-N-acetylglucosamine
           1-carboxyvinyltransferase OS=Thiomicrospira crunogena
           (strain XCL-2) GN=murA PE=3 SV=1
          Length = 418

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLAAGGALGYIGVASLVEGLQK-----AMEIGYVVEGA 366
           I+  GPLL  F E  + L  G A+G   V   +EG+QK      +E GY++  A
Sbjct: 96  ILTMGPLLARFGEAKVSLPGGCAIGSRPVNIHIEGMQKMGAEIKVEQGYIIATA 149


>sp|Q2UCB7|MCA1B_ASPOR Metacaspase-1B OS=Aspergillus oryzae GN=casB
           PE=3 SV=1
          Length = 419

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -2

Query: 400 PSTIKEERDSWLPPPRHNLSP*PFATPQQGMQRLYNPMRHPPQGRYGSLENPPIGAPT 227
           P    +++  W PPP        +  P Q     Y+P ++PP G+Y    + P   P+
Sbjct: 22  PPQQHQQQQQWSPPPPQPYYSNGYPPPSQSPHS-YSPPQYPPHGQYEYGHHTPTPPPS 78
tr_hit_id B3MN94
Definition tr|B3MN94|B3MN94_DROAN GF15164 OS=Drosophila ananassae
Align length 54
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918116|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_G05.
         (461 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3MN94|B3MN94_DROAN GF15164 OS=Drosophila ananassae GN=GF1516...    39   0.17 
tr|Q9VPX2|Q9VPX2_DROME CG4726 OS=Drosophila melanogaster GN=CG47...    37   0.49 
tr|B4P311|B4P311_DROYA GE17341 OS=Drosophila yakuba GN=GE17341 P...    37   0.49 
tr|B4ID58|B4ID58_DROSE GM16795 OS=Drosophila sechellia GN=GM1679...    37   0.49 
tr|B3N8C2|B3N8C2_DROER GG24768 OS=Drosophila erecta GN=GG24768 P...    37   0.49 
tr|B4MZJ1|B4MZJ1_DROWI GK24669 OS=Drosophila willistoni GN=GK246...    37   0.64 
tr|B4LU37|B4LU37_DROVI GJ19520 OS=Drosophila virilis GN=GJ19520 ...    37   0.64 
tr|B4KEU3|B4KEU3_DROMO GI17977 OS=Drosophila mojavensis GN=GI179...    37   0.64 
tr|Q29LH5|Q29LH5_DROPS GA18388 OS=Drosophila pseudoobscura pseud...    36   0.83 
tr|B4JDF0|B4JDF0_DROGR GH11174 OS=Drosophila grimshawi GN=GH1117...    36   0.83 
tr|B4GPY3|B4GPY3_DROPE GL15573 OS=Drosophila persimilis GN=GL155...    36   0.83 
tr|Q9ZR47|Q9ZR47_DAUCA Neutral invertase OS=Daucus carota PE=2 SV=1    36   1.1  
tr|B4Q6N2|B4Q6N2_DROSI GD23071 OS=Drosophila simulans GN=GD23071...    36   1.1  
tr|B4V8V7|B4V8V7_9ACTO Integral membrane protein OS=Streptomyces...    35   1.4  
tr|Q0D313|Q0D313_9MOLL Rhodopsin (Fragment) OS=Illex coindetii P...    35   2.4  
tr|Q14DU0|Q14DU0_MOUSE Sciellin OS=Mus musculus GN=Scel PE=2 SV=1      34   3.2  
tr|Q14DQ7|Q14DQ7_MOUSE Scel protein OS=Mus musculus GN=Scel PE=2...    34   3.2  
tr|Q4T7D7|Q4T7D7_TETNG Chromosome undetermined SCAF8126, whole g...    33   5.4  
tr|Q05CI7|Q05CI7_MOUSE Scel protein (Fragment) OS=Mus musculus G...    33   5.4  
tr|Q5R8W4|Q5R8W4_PONAB Putative uncharacterized protein DKFZp469...    33   5.4  
tr|A8XGF2|A8XGF2_CAEBR CBR-SIN-3 protein OS=Caenorhabditis brigg...    33   5.4  
tr|A7T2Q6|A7T2Q6_NEMVE Predicted protein (Fragment) OS=Nematoste...    33   5.4  
tr|A5UUB0|A5UUB0_ROSS1 FHA domain containing protein OS=Roseifle...    33   7.0  
tr|B6F491|B6F491_LIBAS Putative ABC transporter, ATP-binding pro...    33   9.2  
tr|A3RTK8|A3RTK8_RALSO Putative periplasmic protein OS=Ralstonia...    33   9.2  
tr|Q7RHP8|Q7RHP8_PLAYO Putative uncharacterized protein PY03936 ...    33   9.2  
tr|Q3BDN7|Q3BDN7_9MOLL Rhodopsin (Fragment) OS=Heteroteuthis haw...    33   9.2  
tr|Q381K8|Q381K8_9TRYP Putative uncharacterized protein OS=Trypa...    33   9.2  

>tr|B3MN94|B3MN94_DROAN GF15164 OS=Drosophila ananassae GN=GF15164
           PE=4 SV=1
          Length = 489

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGYIGVASLVEGLQKAMEIGYVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +GYV +G  N
Sbjct: 380 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGYVTKGNQN 433


>tr|Q9VPX2|Q9VPX2_DROME CG4726 OS=Drosophila melanogaster GN=CG4726
           PE=2 SV=1
          Length = 512

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGYIGVASLVEGLQKAMEIGYVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +G+V +G  N
Sbjct: 401 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 454


>tr|B4P311|B4P311_DROYA GE17341 OS=Drosophila yakuba GN=GE17341 PE=4
           SV=1
          Length = 509

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGYIGVASLVEGLQKAMEIGYVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +G+V +G  N
Sbjct: 398 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 451


>tr|B4ID58|B4ID58_DROSE GM16795 OS=Drosophila sechellia GN=GM16795
           PE=4 SV=1
          Length = 512

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGYIGVASLVEGLQKAMEIGYVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +G+V +G  N
Sbjct: 401 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 454


>tr|B3N8C2|B3N8C2_DROER GG24768 OS=Drosophila erecta GN=GG24768 PE=4
           SV=1
          Length = 509

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGYIGVASLVEGLQKAMEIGYVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +G+V +G  N
Sbjct: 398 IVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGNQN 451


>tr|B4MZJ1|B4MZJ1_DROWI GK24669 OS=Drosophila willistoni GN=GK24669
           PE=4 SV=1
          Length = 514

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGYIGVASLVEGLQKAMEIGYVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +G+V  G  N
Sbjct: 401 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTHGNQN 454


>tr|B4LU37|B4LU37_DROVI GJ19520 OS=Drosophila virilis GN=GJ19520
           PE=4 SV=1
          Length = 512

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGYIGVASLVEGLQKAMEIGYVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +G+V  G  N
Sbjct: 399 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTHGNQN 452


>tr|B4KEU3|B4KEU3_DROMO GI17977 OS=Drosophila mojavensis GN=GI17977
           PE=4 SV=1
          Length = 512

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGYIGVASLVEGLQKAMEIGYVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +G+V  G  N
Sbjct: 399 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTHGNQN 452


>tr|Q29LH5|Q29LH5_DROPS GA18388 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA18388 PE=4 SV=1
          Length = 514

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGYIGVASLVEGLQKAMEIGYVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +G+V  G  N
Sbjct: 403 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIIVPLFVGFVTHGNQN 456


>tr|B4JDF0|B4JDF0_DROGR GH11174 OS=Drosophila grimshawi GN=GH11174
           PE=4 SV=1
          Length = 510

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 220 IVGWGPLLEGFLENHIDLA---AGGALGYIGVASLVEGLQKAMEIGYVVEGATN 372
           IV  G +  GFL NHID+A   AG  +     A+ + G+   + +G+V  G  N
Sbjct: 397 IVAMGAMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIIVPLFVGFVTHGNQN 450