NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918123
Clone id YMU001_000109_G12
Library
Length 513
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGAAAGATCCAGTGGCTCCTCGGGAATGGCGCTGGCGTTGGCTCCATTCTTTAGGCTTT
GACATGTCAGCAGTTTGTTACATTCTACATCTAGTCTCATAGATCCATTAGAGTTCAAAG
TGTTACCCATAAGATCTCATAGCCTATATATAATCATGGAGATTTCCTATCAATAGTTAA
GTCTACCATTAGCATAGTCAACATACTTCCGACCTTTCTTTGTCTCAAATATGCATGTCA
TATGCTGTGCTCTACGTACCACATGTGGAATAGTAGCATCCCCACCCATAAATATCCTTT
CCATTTAAATTGTCTCTTGTGTATTAGACCGCCCTCTTTTTATCCATGCCTACAATCTAT
AGAATCAATGCTACCCTCAGTGTCTCTTGTGTATTAGAACGCCCTCTTTTTATCCATGCC
TACAATCAATGCTACCCTCAGTGCTCTCTACTCTTGCTAATGCGCCATGCATTCGTTATG
GTTAGCTACCCCACTTTTTCTACTCAATGATTT
■■Homology search results ■■ -
sp_hit_id Q8BU91
Definition sp|Q8BU91|S26A9_MOUSE Solute carrier family 26 member 9 OS=Mus musculus
Align length 30
Score (bit) 27.3
E-value 0.74
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918123|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_G12.
         (513 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BU91|S26A9_MOUSE Solute carrier family 26 member 9 OS=Mus m...    27   0.74 
sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4 OS=...    32   1.3  
sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=...    32   1.3  
sp|P62932|FBX40_MOUSE F-box only protein 40 OS=Mus musculus GN=F...    32   2.2  
sp|Q7LBE3|S26A9_HUMAN Solute carrier family 26 member 9 OS=Homo ...    27   2.6  
sp|Q9QZK9|DNS2B_RAT Deoxyribonuclease-2-beta OS=Rattus norvegicu...    31   3.8  
sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=...    30   5.0  

>sp|Q8BU91|S26A9_MOUSE Solute carrier family 26 member 9 OS=Mus
           musculus GN=Slc26a9 PE=2 SV=1
          Length = 790

 Score = 27.3 bits (59), Expect(2) = 0.74
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 183 LPLA*STYFRPFFVSNMHVICCALRTTCGI 272
           + L  S +F  FF   +HVICCAL  T  +
Sbjct: 370 IALGCSNFFGSFF--KIHVICCALSVTLAV 397



 Score = 24.6 bits (52), Expect(2) = 0.74
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 10  PVAPREWRWRWLHSLGFDMSAVCYILHL 93
           PVAP   +W+ +    F ++ V Y+++L
Sbjct: 322 PVAPMVSQWKGMVGTAFSLAIVGYVINL 349


>sp|Q5RCD3|UBP4_PONAB Ubiquitin carboxyl-terminal hydrolase 4
           OS=Pongo abelii GN=USP4 PE=2 SV=1
          Length = 963

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 320 CIRPPSFYPCLQSIESMLPSVSLVY*NALFLSMPTINATLSALYSC*CAMHSLWLATPL 496
           C+  P ++   +S  S   S S +Y   L LS+P    TL +LY   C   S ++  PL
Sbjct: 577 CVTLPVYFRERKSRPSSTSSASALYGQPLLLSVPKHKLTLESLYQAVCDRISRYVKQPL 635


>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4
           OS=Homo sapiens GN=USP4 PE=1 SV=3
          Length = 963

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 320 CIRPPSFYPCLQSIESMLPSVSLVY*NALFLSMPTINATLSALYSC*CAMHSLWLATPL 496
           C+  P ++   +S  S   S S +Y   L LS+P    TL +LY   C   S ++  PL
Sbjct: 577 CVTLPVYFRERKSRPSSTSSASALYGQPLLLSVPKHKLTLESLYQAVCDRISRYVKQPL 635


>sp|P62932|FBX40_MOUSE F-box only protein 40 OS=Mus musculus
           GN=Fbxo40 PE=2 SV=1
          Length = 710

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 197 VNILPTFLCLKYACHMLC-STYHMWNSSIPTHKYPFHLNCLLCIRPPSFYPCLQS 358
           V + P+  CL  +CH+LC +T+HM   S  T         LLC  P    PCL S
Sbjct: 25  VPVEPSVSCLVISCHLLCGATFHMCKESEHT---------LLC--PLEQVPCLNS 68


>sp|Q7LBE3|S26A9_HUMAN Solute carrier family 26 member 9 OS=Homo
           sapiens GN=SLC26A9 PE=2 SV=1
          Length = 791

 Score = 27.3 bits (59), Expect(2) = 2.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 183 LPLA*STYFRPFFVSNMHVICCALRTTCGI 272
           + L  S +F  FF   +HVICCAL  T  +
Sbjct: 370 IALGCSNFFGSFF--KIHVICCALSVTLAV 397



 Score = 22.7 bits (47), Expect(2) = 2.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 10  PVAPREWRWRWLHSLGFDMSAVCYILHL 93
           PV+P   +W+ +    F ++ V Y+++L
Sbjct: 322 PVSPVVSQWKDMIGTAFSLAIVSYVINL 349


>sp|Q9QZK9|DNS2B_RAT Deoxyribonuclease-2-beta OS=Rattus norvegicus
           GN=Dnase2b PE=1 SV=1
          Length = 356

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 161 DFLSIVKSTISIVNILPTFLCLKYACHMLCSTYHMWNSSIPTH-KYPFHLNCLLCIRPP 334
           +FL   KST    +I   ++  K   H+L  ++   N  +P++   P+H+  +  IR P
Sbjct: 231 NFLHFAKSTFYTDDIFAAWIAQKLKVHLLVESWQRKNHELPSNCSLPYHVYNIKAIRGP 289


>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus
           musculus GN=Usp4 PE=2 SV=2
          Length = 962

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 320 CIRPPSFYPCLQSIESMLPSVSLVY*NALFLSMPTINATLSALYSC*CAMHSLWLATPL 496
           CI  P ++   +S  S   S +++Y   L +S+P    TL +LY   C   S ++  PL
Sbjct: 577 CITLPVYFREKKSRPSSASSGAVLYGQPLLVSVPKHKLTLESLYQAVCDRISRYIKQPL 635
tr_hit_id Q9XMG4
Definition tr|Q9XMG4|Q9XMG4_9CEST NADH-ubiquinone oxidoreductase chain 1 (Fragment) OS=Echinococcus vogeli
Align length 66
Score (bit) 36.2
E-value 0.96
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918123|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_G12.
         (513 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9XMG4|Q9XMG4_9CEST NADH-ubiquinone oxidoreductase chain 1 (F...    36   0.96 
tr|A4PBD6|A4PBD6_9CEST NADH-ubiquinone oxidoreductase chain 1 OS...    36   0.96 
tr|Q9XMF7|Q9XMF7_9CEST NADH-ubiquinone oxidoreductase chain 1 (F...    34   3.7  
tr|Q22M55|Q22M55_TETTH Putative uncharacterized protein OS=Tetra...    34   4.8  
tr|Q53FJ3|Q53FJ3_HUMAN Ubiquitin carboxyl-terminal hydrolase (Fr...    33   8.1  

>tr|Q9XMG4|Q9XMG4_9CEST NADH-ubiquinone oxidoreductase chain 1
           (Fragment) OS=Echinococcus vogeli GN=ND1 PE=3 SV=1
          Length = 157

 Score = 36.2 bits (82), Expect = 0.96
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
 Frame = +2

Query: 149 YNHGDFLSIVKSTISIVNILPTFLCLKYACHMLCSTYHM--------WNSSIPTHKYPFH 304
           YN+  FLS V+   S V+    F+C+   C + C +Y++        WN  +    Y   
Sbjct: 82  YNNYSFLSSVRCAFSSVSFEACFMCVVIFCALCCCSYNLVDFYNSCWWNWLLFPLIYGLF 141

Query: 305 LNCLLC 322
           L C+LC
Sbjct: 142 LICVLC 147


>tr|A4PBD6|A4PBD6_9CEST NADH-ubiquinone oxidoreductase chain 1
           OS=Echinococcus vogeli GN=nad1 PE=3 SV=1
          Length = 297

 Score = 36.2 bits (82), Expect = 0.96
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
 Frame = +2

Query: 149 YNHGDFLSIVKSTISIVNILPTFLCLKYACHMLCSTYHM--------WNSSIPTHKYPFH 304
           YN+  FLS V+   S V+    F+C+   C + C +Y++        WN  +    Y   
Sbjct: 127 YNNYSFLSSVRCAFSSVSFEACFMCVVIFCALCCCSYNLVDFYNSCWWNWLLFPLIYGLF 186

Query: 305 LNCLLC 322
           L C+LC
Sbjct: 187 LICVLC 192


>tr|Q9XMF7|Q9XMF7_9CEST NADH-ubiquinone oxidoreductase chain 1
           (Fragment) OS=Echinococcus ortleppi GN=ND1 PE=3 SV=1
          Length = 157

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
 Frame = +2

Query: 149 YNHGDFLSIVKSTISIVNILPTFLCLKYACHMLCSTYHM--------WNSSIPTHKYPFH 304
           YN   FLS V+     V+    F+C+   C + C +Y++        W+  +    Y F 
Sbjct: 82  YNSYSFLSSVRCAFGSVSFEACFMCVVIFCALCCCSYNLIDFYHSYWWSWLLFPLIYGFF 141

Query: 305 LNCLLC 322
           L C+LC
Sbjct: 142 LVCVLC 147


>tr|Q22M55|Q22M55_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00037650 PE=4
           SV=1
          Length = 1906

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 20/55 (36%), Positives = 25/55 (45%)
 Frame = +3

Query: 228 NMHVICCALRTTCGIVASPPINILSI*IVSCVLDRPLFIHAYNL*NQCYPQCLLC 392
           N  + C A  TTC    SP I  LS   V+C  +   F+   N+ N C   CL C
Sbjct: 177 NNCLTCQAQSTTCISCKSPQILNLSSQCVNCDQNNGYFVSPQNICNPCDASCLTC 231


>tr|Q53FJ3|Q53FJ3_HUMAN Ubiquitin carboxyl-terminal hydrolase
           (Fragment) OS=Homo sapiens PE=2 SV=1
          Length = 963

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +2

Query: 320 CIRPPSFYPCLQSIESMLPSVSLVY*NALFLSMPTINATLSALYSC*CAMHSLWLATPL 496
           C+  P ++   +S  S+  S S +Y   L LS+P    TL +LY   C   S ++  PL
Sbjct: 577 CVTLPVYFRERKSRPSITSSASALYGQPLLLSVPKHKLTLESLYQAVCDRISRYVKQPL 635