BP918133 |
Clone id |
YMU001_000109_H11 |
Library |
YMU01 |
Length |
289 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000109_H11. |
Accession |
BP918133 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL6Contig1 |
Sequence |
TCCCCTCCCTCTCTCCTAAGCTATCCGCCCGCTCCCTCAGAATCGAGGCAAGTGGTGTCA AGAAGATCTCGACCAAAACTCCCTTGGGACCTTCCGGCGATACCAAATTCAAGGGTAACC TGGATGCCTCTGGTCGCAAAGCTAAGGGAAAGGGAGTCTACCAATATACCAAGAAGTATG GTGCTAATGTCGATGGATACAGCCCTATCTATGTCCCAGAGGAATGGTCAACTTCTGGTG ATAGCTATGCTGCAGGTCCTACTGGATTGGCTATCTGGGCAGTTACCCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40519 |
Definition |
sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum |
Align length |
95 |
Score (bit) |
119.0 |
E-value |
5.0e-27 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918133|Adiantum capillus-veneris mRNA, clone: YMU001_000109_H11. (289 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 119 5e-27 sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 119 6e-27 sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 119 6e-27 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 118 8e-27 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 117 2e-26 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 115 7e-26 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 113 3e-25 sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus muscu... 30 4.8 sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal tr... 30 4.8 sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal ... 30 4.8 sp|Q9UT77|GATB_SCHPO Probable glutamyl-tRNA(Gln) amidotransferas... 29 8.2 sp|P00573|RPOL_BPT7 DNA-directed RNA polymerase OS=Enterobacteri... 29 8.3 sp|P0C582|M2OM_NEUCR Putative mitochondrial 2-oxoglutarate/malat... 29 8.3 sp|Q562C7|K0020_RAT Pumilio domain-containing protein KIAA0020 h... 29 8.3 sp|P19251|ASNS1_PEA Asparagine synthetase, nodule [glutamine-hyd... 29 8.3
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 119 bits (298), Expect = 5e-27 Identities = 58/95 (61%), Positives = 69/95 (72%) Frame = +3
Query: 3 PSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYG 182 PSL+ S+ S R++ASGVKK+ T P G +G + +DASGRK KGKGVYQ+ KYG Sbjct: 24 PSLAR--SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYG 81
Query: 183 ANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVT 287 ANVDGYSPIY ++WS SGD Y G TGLAIWAVT Sbjct: 82 ANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVT 116
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 119 bits (297), Expect = 6e-27 Identities = 59/95 (62%), Positives = 68/95 (71%) Frame = +3
Query: 3 PSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYG 182 PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY KYG Sbjct: 26 PSLAR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYG 83
Query: 183 ANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVT 287 ANVDGYSPIY +EWS SGD Y G TGLAIWAVT Sbjct: 84 ANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVT 118
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 119 bits (297), Expect = 6e-27 Identities = 59/95 (62%), Positives = 68/95 (71%) Frame = +3
Query: 3 PSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYG 182 PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY KYG Sbjct: 26 PSLTR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYG 83
Query: 183 ANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVT 287 ANVDGYSPIY +EWS SGD Y G TGLAIWAVT Sbjct: 84 ANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVT 118
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 118 bits (296), Expect = 8e-27 Identities = 64/106 (60%), Positives = 68/106 (64%), Gaps = 11/106 (10%) Frame = +3
Query: 3 PSLSPKL----------SAR-SLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKG 149 PS SP L SAR SL I A KK+ T P GP G FK +DASGR AKG Sbjct: 13 PSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKG 72
Query: 150 KGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVT 287 KGVYQ+ KYGANVDGYSPIY PEEWS SGD Y G TGL +WAVT Sbjct: 73 KGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 118
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 117 bits (292), Expect = 2e-26 Identities = 59/95 (62%), Positives = 67/95 (70%) Frame = +3
Query: 3 PSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYG 182 PSL+ + S S RI ASGVKKI T P G +G + +DASGRK KG GVY++ KYG Sbjct: 28 PSLT-RASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYG 86
Query: 183 ANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVT 287 ANVDGYSPIY +EWS SGD Y G TGLAIWAVT Sbjct: 87 ANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVT 121
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 115 bits (288), Expect = 7e-26 Identities = 58/95 (61%), Positives = 66/95 (69%) Frame = +3
Query: 3 PSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYG 182 PSLS S+ S + ASGVKKI PLG G K + +D+SGRK GKGVYQ+ KYG Sbjct: 28 PSLSR--SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYG 85
Query: 183 ANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVT 287 ANVDGYSPIY EEW+ +GD YA G TGL IWAVT Sbjct: 86 ANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 113 bits (283), Expect = 3e-25 Identities = 55/85 (64%), Positives = 60/85 (70%) Frame = +3
Query: 33 SLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIY 212 S +I ASGVKKI T P G +G + +DASGRK KG GVY+Y KYGANVDGYSPIY Sbjct: 36 SFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIY 95
Query: 213 VPEEWSTSGDSYAAGPTGLAIWAVT 287 EWS SGD Y G TGLAIWAVT Sbjct: 96 NENEWSASGDVYKGGVTGLAIWAVT 120
>sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus musculus GN=Tcf7l1 PE=1 SV=2 Length = 584
Score = 29.6 bits (65), Expect = 4.8 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -1
Query: 268 NPVGPAA*LSPEVDHSSGT*IGLYPSTLAPYF 173 +P P LSPE+D +G +PS L+PY+ Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYY 231
>sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1 Length = 349
Score = 29.6 bits (65), Expect = 4.8 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +3
Query: 165 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGP 260 Y +G N D Y Y PEEW+T+ S A P Sbjct: 303 YDYGHGVNEDAYDS-YAPEEWTTTRSSLKAPP 333
>sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1 Length = 349
Score = 29.6 bits (65), Expect = 4.8 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +3
Query: 165 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGP 260 Y +G N D Y Y PEEW+T+ S A P Sbjct: 303 YDYGHGVNEDAYDS-YAPEEWATTRSSLKAPP 333
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9PIM0 |
Definition |
tr|A9PIM0|A9PIM0_POPJC Putative uncharacterized protein OS=Populus jackii |
Align length |
91 |
Score (bit) |
131.0 |
E-value |
2.0e-29 |
Report |
 |