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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918143
Clone id YMU001_000110_A11
Library
Length 414
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAGCGGATTTCCAGCTAGGGTGTGGCTATCCCGAGTACAATCTGGTGAGTGATGTTCAA
AATCAAAAGGCAAACACTACTTTTGGTCAGCTGTGTTAGCTTTAAATCCAAAGTTAAGAA
GGAAGTGGTCCACAAGTGTTAGCACCAAGCTACCGAGAGCTAAGGGAAAAGTGCAAGCAG
TGCAAAACATGGCTTTCAGGGTAGGTAGCCCACCAACGTTCTTCCGGTAGTGGATGCGGT
TATAGAGAAGAGGATGCAGGTACAAGCCTACATAGATGGTGAAGCACAGGTTTGTGTTAT
GACGGAAGCAGCCATGAAAGAGAGGGGAGTCAAGGCAGTTGTCAAGTCAAATATGCGCAT
GAGGATGGCTAACCATACTAAAGCCAGGTGTCTGGGTGTGGCTCAGGATGTGAA
■■Homology search results ■■ -
sp_hit_id P62294
Definition sp|P62294|ASPM_PONPY Abnormal spindle-like microcephaly-associated protein homolog OS=Pongo pygmaeus
Align length 28
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918143|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_A11.
         (414 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P62294|ASPM_PONPY Abnormal spindle-like microcephaly-associat...    31   2.2  
sp|P62293|ASPM_PANTR Abnormal spindle-like microcephaly-associat...    31   2.2  
sp|P62292|ASPM_MACMU Abnormal spindle-like microcephaly-associat...    31   2.2  
sp|P62291|ASPM_MACFA Abnormal spindle-like microcephaly-associat...    31   2.2  
sp|P62290|ASPM_HYLLA Abnormal spindle-like microcephaly-associat...    31   2.2  
sp|Q8IZT6|ASPM_HUMAN Abnormal spindle-like microcephaly-associat...    31   2.2  
sp|P62289|ASPM_GORGO Abnormal spindle-like microcephaly-associat...    31   2.2  
sp|P62283|ASPM_AOTVO Abnormal spindle-like microcephaly-associat...    31   2.2  
sp|Q8TES7|FBF1_HUMAN Fas-binding factor 1 OS=Homo sapiens GN=FBF...    29   6.4  
sp|Q12361|GPR1_YEAST G protein-coupled receptor GPR1 OS=Saccharo...    29   6.5  
sp|P62296|ASPM_SAIBB Abnormal spindle-like microcephaly-associat...    29   8.4  

>sp|P62294|ASPM_PONPY Abnormal spindle-like microcephaly-associated
           protein homolog OS=Pongo pygmaeus GN=ASPM PE=2 SV=1
          Length = 3471

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 135 SVSTKLPRAKGKVQAVQNMAFRVGSPPT 218
           SVS K+ R +  +QA +N+A   G PPT
Sbjct: 174 SVSQKVDRVRSPLQACENLAMNEGGPPT 201


>sp|P62293|ASPM_PANTR Abnormal spindle-like microcephaly-associated
           protein homolog OS=Pan troglodytes GN=ASPM PE=2 SV=1
          Length = 3477

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 135 SVSTKLPRAKGKVQAVQNMAFRVGSPPT 218
           SVS K+ R +  +QA +N+A   G PPT
Sbjct: 180 SVSQKVDRVRSPLQACENLAMNEGGPPT 207


>sp|P62292|ASPM_MACMU Abnormal spindle-like microcephaly-associated
           protein homolog OS=Macaca mulatta GN=ASPM PE=3 SV=1
          Length = 3479

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 135 SVSTKLPRAKGKVQAVQNMAFRVGSPPT 218
           SVS K+ R +  +QA +N+A   G PPT
Sbjct: 180 SVSQKVDRVRSPLQACENLAMNEGGPPT 207


>sp|P62291|ASPM_MACFA Abnormal spindle-like microcephaly-associated
           protein homolog OS=Macaca fascicularis GN=ASPM PE=2 SV=1
          Length = 3476

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 135 SVSTKLPRAKGKVQAVQNMAFRVGSPPT 218
           SVS K+ R +  +QA +N+A   G PPT
Sbjct: 180 SVSQKVDRVRSPLQACENLAMNEGGPPT 207


>sp|P62290|ASPM_HYLLA Abnormal spindle-like microcephaly-associated
           protein homolog OS=Hylobates lar GN=ASPM PE=3 SV=1
          Length = 3477

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 135 SVSTKLPRAKGKVQAVQNMAFRVGSPPT 218
           SVS K+ R +  +QA +N+A   G PPT
Sbjct: 180 SVSQKVDRVRSPLQACENLAMNEGGPPT 207


>sp|Q8IZT6|ASPM_HUMAN Abnormal spindle-like microcephaly-associated
           protein OS=Homo sapiens GN=ASPM PE=1 SV=2
          Length = 3477

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 135 SVSTKLPRAKGKVQAVQNMAFRVGSPPT 218
           SVS K+ R +  +QA +N+A   G PPT
Sbjct: 180 SVSQKVDRVRSPLQACENLAMNEGGPPT 207


>sp|P62289|ASPM_GORGO Abnormal spindle-like microcephaly-associated
           protein homolog OS=Gorilla gorilla gorilla GN=ASPM PE=2
           SV=1
          Length = 3476

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 135 SVSTKLPRAKGKVQAVQNMAFRVGSPPT 218
           SVS K+ R +  +QA +N+A   G PPT
Sbjct: 180 SVSQKVDRVRSPLQACENLAMNEGGPPT 207


>sp|P62283|ASPM_AOTVO Abnormal spindle-like microcephaly-associated
           protein homolog OS=Aotus vociferans GN=ASPM PE=2 SV=1
          Length = 3473

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 135 SVSTKLPRAKGKVQAVQNMAFRVGSPPT 218
           SVS K+ R +  +QA +N+A   G PPT
Sbjct: 180 SVSQKVDRVRSPLQACENLAMNEGGPPT 207


>sp|Q8TES7|FBF1_HUMAN Fas-binding factor 1 OS=Homo sapiens GN=FBF1
           PE=2 SV=2
          Length = 1133

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +1

Query: 118 EGSGPQVLAPSYRELREKCKQCKTWLSG*VAHQRSSGSGCGYREEDAGTSLHRW*STGLC 297
           EG+G    A    +LR   ++ + WLS  ++ ++S G     RE+ AGT      S GL 
Sbjct: 399 EGAGSPAKASQASKLRASKEEKEDWLSHALSRKKSQGLA---REQHAGT------SEGLH 449

Query: 298 YDGSS-HEREGSQ 333
             G++ H   GSQ
Sbjct: 450 LAGTAGHPPSGSQ 462


>sp|Q12361|GPR1_YEAST G protein-coupled receptor GPR1
           OS=Saccharomyces cerevisiae GN=GPR1 PE=1 SV=1
          Length = 961

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -3

Query: 274 YVGLYLHPLLYNRIHYRKNVGGLPTLKAMFCTACTFPLA 158
           Y+G++L P++ + + Y   +   PT+   +   C  PL+
Sbjct: 630 YIGIWLFPIIADALQYNHEIKHGPTMWVTYIDTCVRPLS 668
tr_hit_id Q28ZV2
Definition tr|Q28ZV2|Q28ZV2_DROPS GA15581 OS=Drosophila pseudoobscura pseudoobscura
Align length 102
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918143|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_A11.
         (414 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q28ZV2|Q28ZV2_DROPS GA15581 OS=Drosophila pseudoobscura pseud...    36   0.84 
tr|Q894M3|Q894M3_CLOTE Putative uncharacterized protein OS=Clost...    33   5.4  

>tr|Q28ZV2|Q28ZV2_DROPS GA15581 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA15581 PE=4 SV=2
          Length = 1413

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
 Frame = -3

Query: 316 HGCFRHNTNLC-FTIYVGLYLHPLLYNRIHYRKNVGGLPTLKAMFCTACTFPLALGSLVL 140
           H  FRH   LC F +Y  + L      + H R++V G     +  C  C+F      L  
Sbjct: 138 HKTFRHECKLCGFVVYNRMEL------KQHIRQHVDG----SSYSCKVCSFVTLKQRL-- 185

Query: 139 TLVDHFLLNFGFKANTADQK*CLPFDFEHHSPDCTRDSHTLA 14
            L +H+    G  AN AD+K   P  F + +P  +  S T A
Sbjct: 186 -LQEHYSATHGMSANHADEK-VKPKSFTNAAPSTSSASATAA 225


>tr|Q894M3|Q894M3_CLOTE Putative uncharacterized protein
           OS=Clostridium tetani GN=CTC_01517 PE=4 SV=1
          Length = 221

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
 Frame = -3

Query: 412 HILSHTQTPGFSMVSHPHAHI*LDNCLDSPLFHGCFRHNTNLCFTIYVG--------LYL 257
           H + H   PG     H   +  +DNC+   +  G   H+ + C   Y+         +  
Sbjct: 114 HCMHHGMNPGMDHCMHHGMNPGMDNCMHYDMNPG-MHHDMHCCMPPYMHSEMMCHPMMMC 172

Query: 256 HPLLYNRIHYRKNVGGLPTLKAMFC 182
           HP+++        +GG P +  M C
Sbjct: 173 HPMMWGHGGMHPMMGGYPGMNPMMC 197