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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918147
Clone id YMU001_000110_B03
Library
Length 540
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACTAAAGAAGATCAAACTCCTTTGTGCTGAAGGCAACAGCTCGAGCTAAGATCCGGAAA
GTAAAAAACTCAAACGTCAGCCATATACACAAAATGTGCAACAGTGACATCGTTGAACAC
CAAACTGCAACATGTTGAAATCTGAAATCTGAATCTTTTAGATGGCTTTCTTGTGAAAGA
GAAATTTATCGGCTTCACAGCACTTAAGACTAGTAGCCCTGCTTGACAGAGCATGCCACT
GCTTGCGCCCAATGTCGCAGCCTTGTCTTGACTTGACTAGGATGGTCACCTGGGCTAGAA
ATACGCCAATTCTCGCTAGATGGACTTGACGCGCTACCCGCACTGTTGGTCCGAAGAAGT
GCATTCCCTTCTAGGGGTGACACAGGTGAAGAGCGTGTTTGCGCATCAACAAAGTTCTTA
TTGATTGCATAGTAGAGCTCCAGCGCAGGAAGTGTGCTTCTCAAGTTACATCGCTCGCTG
TAACTAAATCCAAATCCCAGGTCAATGGAACCCCGGAGTTCTTCCAAATCTTCATCTGTC
■■Homology search results ■■ -
sp_hit_id Q96DL1
Definition sp|Q96DL1|FA55B_HUMAN Protein FAM55B OS=Homo sapiens
Align length 30
Score (bit) 30.4
E-value 5.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918147|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_B03.
         (540 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96DL1|FA55B_HUMAN Protein FAM55B OS=Homo sapiens GN=FAM55B P...    30   5.7  
sp|A6QP84|SOAT_BOVIN Solute carrier family 10 member 6 OS=Bos ta...    30   5.8  
sp|A7HGZ2|PANB_ANADF 3-methyl-2-oxobutanoate hydroxymethyltransf...    30   5.8  
sp|Q95918|NU5M_POLOR NADH-ubiquinone oxidoreductase chain 5 OS=P...    30   5.8  
sp|A8F498|PANB_THELT 3-methyl-2-oxobutanoate hydroxymethyltransf...    30   7.6  
sp|O42996|YBC5_SCHPO Uncharacterized WD repeat-containing protei...    30   9.8  
sp|Q05212|DR102_ARATH DNA-damage-repair/toleration protein DRT10...    30   9.8  
sp|Q2IFU2|PANB_ANADE 3-methyl-2-oxobutanoate hydroxymethyltransf...    30   9.9  

>sp|Q96DL1|FA55B_HUMAN Protein FAM55B OS=Homo sapiens GN=FAM55B PE=2
           SV=1
          Length = 365

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 231 ACHCLRPMSQPCLDLTRMVTWARNTPILAR 320
           A +C+RP   PC  LT M T  RN   L++
Sbjct: 252 AFYCVRPQHMPCEALTHMTTRTRNISYLSK 281


>sp|A6QP84|SOAT_BOVIN Solute carrier family 10 member 6 OS=Bos
           taurus GN=SLC10A6 PE=2 SV=2
          Length = 377

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -1

Query: 249 GASSGMLCQAGLLVLSAVKPINFSFTRKPSKRFRFQISTCC 127
           G + GMLCQ GL+ L A   I  SF+ KP +     I  CC
Sbjct: 67  GIAVGMLCQFGLMPLIAYLLI-ISFSLKPLQAIAVLIMGCC 106


>sp|A7HGZ2|PANB_ANADF 3-methyl-2-oxobutanoate
           hydroxymethyltransferase OS=Anaeromyxobacter sp. (strain
           Fw109-5) GN=panB PE=3 SV=1
          Length = 305

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -1

Query: 276 SSQDKAATLGASSGMLCQAGLLVLSAVKPINFSFTRKPSKRF 151
           SSQ +  T+G  +G+ C   +LVL+ +  ++ +FT K  KRF
Sbjct: 205 SSQLRIPTIGIGAGLHCDGQVLVLNDLLGMDDAFTPKFVKRF 246


>sp|Q95918|NU5M_POLOR NADH-ubiquinone oxidoreductase chain 5
           OS=Polypterus ornatipinnis GN=MT-ND5 PE=3 SV=1
          Length = 613

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 216 LLVLSAVKPINFSFTRKPSKRFRFQISTCCSLVF 115
           L ++  + PI FSF  KPS ++ FQ+     L F
Sbjct: 16  LTMIILILPITFSFITKPSNKWPFQVKNAVKLSF 49


>sp|A8F498|PANB_THELT 3-methyl-2-oxobutanoate
           hydroxymethyltransferase OS=Thermotoga lettingae (strain
           ATCC BAA-301 / DSM 14385 / TMO) GN=panB PE=3 SV=1
          Length = 265

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -1

Query: 255 TLGASSGMLCQAGLLVLSAVKPINFSFTRKPSKRFR--FQIS 136
           T+G  SG  C   +LV++ +  +N SF  K +KR+   FQIS
Sbjct: 197 TIGIGSGRFCDGQILVINDLLGMNPSFLPKFAKRYSNLFQIS 238


>sp|O42996|YBC5_SCHPO Uncharacterized WD repeat-containing protein
           C27B12.05 OS=Schizosaccharomyces pombe GN=SPBC27B12.05
           PE=2 SV=1
          Length = 391

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 384 R*RACLRINKVLIDCIVELQRRKCAS---QVTSLAVTKSKSQVNGTPEFFQIFI 536
           R +A  RIN  +I+CI ELQ   CAS   Q+T L +  +   +NG P +   F+
Sbjct: 274 RFQALHRIN--MIECIPELQSVVCASQSGQLTLLRLICTTKILNGNPIYVYSFV 325


>sp|Q05212|DR102_ARATH DNA-damage-repair/toleration protein DRT102
           OS=Arabidopsis thaliana GN=DRT102 PE=2 SV=2
          Length = 310

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -3

Query: 367 GMHFFGPTVRVARQVHLARIGVFLAQVTILVKSRQGCDIGRKQWHALSSRATSLKCC 197
           G   FG +++ A   HL  +G+ +    +      G ++GR+   + SS    L CC
Sbjct: 17  GADDFGASLKDAMVTHLRSLGIDVEDTGVSSYYSAGSEVGRRVSASSSSEVRGLVCC 73


>sp|Q2IFU2|PANB_ANADE 3-methyl-2-oxobutanoate
           hydroxymethyltransferase OS=Anaeromyxobacter
           dehalogenans (strain 2CP-C) GN=panB PE=3 SV=1
          Length = 305

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -1

Query: 276 SSQDKAATLGASSGMLCQAGLLVLSAVKPINFSFTRKPSKRF 151
           +SQ +  T+G  +G  C   +LVL+ +  ++ SFT K  KRF
Sbjct: 205 TSQLRIPTIGIGAGPHCDGQVLVLNDLLGLDASFTPKFVKRF 246
tr_hit_id B8LL54
Definition tr|B8LL54|B8LL54_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 107
Score (bit) 108.0
E-value 2.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918147|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_B03.
         (540 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LL54|B8LL54_PICSI Putative uncharacterized protein OS=Picea...   108   2e-22
tr|A5AU09|A5AU09_VITVI Putative uncharacterized protein OS=Vitis...   104   3e-21
tr|A9NRJ8|A9NRJ8_PICSI Putative uncharacterized protein OS=Picea...   103   4e-21
tr|A7QMQ9|A7QMQ9_VITVI Chromosome undetermined scaffold_127, who...   103   6e-21
tr|A5APB7|A5APB7_VITVI Putative uncharacterized protein OS=Vitis...   103   6e-21
tr|Q9MA39|Q9MA39_ARATH T20M3.14 protein (At1g05870) OS=Arabidops...   102   1e-20
tr|Q2QVG6|Q2QVG6_ORYSJ Os12g0230600 protein OS=Oryza sativa subs...   100   5e-20
tr|B6TMR9|B6TMR9_MAIZE Putative uncharacterized protein OS=Zea m...   100   5e-20
tr|A3CG27|A3CG27_ORYSJ Putative uncharacterized protein OS=Oryza...   100   5e-20
tr|Q53NY5|Q53NY5_ORYSJ Os11g0282300 protein OS=Oryza sativa subs...   100   6e-20
tr|A3CAH5|A3CAH5_ORYSJ Putative uncharacterized protein OS=Oryza...   100   6e-20
tr|O22849|O22849_ARATH Putative uncharacterized protein At2g4334...    99   1e-19
tr|Q0JGW8|Q0JGW8_ORYSJ Os01g0898800 protein OS=Oryza sativa subs...    99   2e-19
tr|B8A7Q7|B8A7Q7_ORYSI Putative uncharacterized protein OS=Oryza...    99   2e-19
tr|Q8VZ71|Q8VZ71_ARATH Putative uncharacterized protein At2g3156...    98   2e-19
tr|Q94JW9|Q94JW9_ARATH Putative uncharacterized protein At2g4334...    98   3e-19
tr|B4F878|B4F878_MAIZE Putative uncharacterized protein OS=Zea m...    97   5e-19
tr|Q9SR04|Q9SR04_ARATH F7O18.17 protein (At3g04700) OS=Arabidops...    95   2e-18
tr|B6TXA4|B6TXA4_MAIZE Putative uncharacterized protein OS=Zea m...    95   2e-18
tr|Q9FRR0|Q9FRR0_ARATH F22O13.28 (Putative uncharacterized prote...    94   3e-18
tr|A7QM48|A7QM48_VITVI Chromosome chr5 scaffold_124, whole genom...    94   5e-18
tr|Q7XX26|Q7XX26_ORYSJ Os04g0282200 protein OS=Oryza sativa subs...    93   8e-18
tr|Q01MG5|Q01MG5_ORYSA OSIGBa0131F24.4 protein OS=Oryza sativa G...    93   8e-18
tr|A2XRD9|A2XRD9_ORYSI Putative uncharacterized protein OS=Oryza...    93   8e-18
tr|Q6NQD5|Q6NQD5_ARATH At5g28690 (Putative uncharacterized prote...    91   3e-17
tr|B4FN75|B4FN75_MAIZE Putative uncharacterized protein OS=Zea m...    91   4e-17
tr|B6TB65|B6TB65_MAIZE Putative uncharacterized protein OS=Zea m...    87   4e-16
tr|A7PL97|A7PL97_VITVI Chromosome chr7 scaffold_20, whole genome...    83   8e-15
tr|A5BUG9|A5BUG9_VITVI Putative uncharacterized protein OS=Vitis...    80   5e-14
tr|Q8L8Y8|Q8L8Y8_ARATH Putative uncharacterized protein OS=Arabi...    76   1e-12

>tr|B8LL54|B8LL54_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 353

 Score =  108 bits (269), Expect = 2e-22
 Identities = 57/107 (53%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
 Frame = -2

Query: 539 TDEDLEELRGSIDLGFGFSYSERCNLRSTLPALELYYAINKNFVDAQ-TRSSPVSPLEGN 363
           T+ DL+EL+G +DLGFGF+Y E   L +TLPALEL YAI + F D Q  +SSPVS L+  
Sbjct: 247 TNVDLDELKGCLDLGFGFNYEEMPELSNTLPALELCYAIGQKFQDDQHQKSSPVSTLDN- 305

Query: 362 ALLRTNXXXXXXXXXSENWRISSPGDHPSQVKTRLRHWAQAVACSVK 222
             + ++           NW+ISSPGDHP QVK RL+ WAQAVAC+V+
Sbjct: 306 --MDSSNNEGYAQSPIANWKISSPGDHPQQVKERLKVWAQAVACTVR 350


>tr|A5AU09|A5AU09_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_034776 PE=4 SV=1
          Length = 295

 Score =  104 bits (259), Expect = 3e-21
 Identities = 52/104 (50%), Positives = 68/104 (65%)
 Frame = -2

Query: 539 TDEDLEELRGSIDLGFGFSYSERCNLRSTLPALELYYAINKNFVDAQTRSSPVSPLEGNA 360
           TDEDL+EL+G +DLGFGFSY E   L +TLPALEL Y++++ F+D Q ++   SP    +
Sbjct: 88  TDEDLDELKGCLDLGFGFSYEEIPELCNTLPALELCYSMSQKFMDDQQKAPESSPAASES 147

Query: 359 LLRTNXXXXXXXXXSENWRISSPGDHPSQVKTRLRHWAQAVACS 228
                           NW+ISSPGDHP +VK RL+ WAQAVAC+
Sbjct: 148 -----------PGPIANWKISSPGDHPEEVKARLKFWAQAVACT 180


>tr|A9NRJ8|A9NRJ8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 217

 Score =  103 bits (258), Expect = 4e-21
 Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 4/111 (3%)
 Frame = -2

Query: 539 TDEDLEELRGSIDLGFGFSYSER----CNLRSTLPALELYYAINKNFVDAQTRSSPVSPL 372
           TDED++ELRG IDLGFGF +         L  TLPAL  YYA+NK++ D++ +SSP SP 
Sbjct: 106 TDEDVDELRGCIDLGFGFGFDSEEEGDHKLCDTLPALYFYYAVNKHYNDSKFKSSP-SPS 164

Query: 371 EGNALLRTNXXXXXXXXXSENWRISSPGDHPSQVKTRLRHWAQAVACSVKQ 219
             ++   +           + W ISSPGD+P  VKTRLRHWAQ VACSV+Q
Sbjct: 165 PPSSSSSSCDENPPQGQDLDPWIISSPGDNPQLVKTRLRHWAQVVACSVRQ 215


>tr|A7QMQ9|A7QMQ9_VITVI Chromosome undetermined scaffold_127, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00002172001 PE=4 SV=1
          Length = 197

 Score =  103 bits (257), Expect = 6e-21
 Identities = 58/119 (48%), Positives = 76/119 (63%), Gaps = 10/119 (8%)
 Frame = -2

Query: 539 TDEDLEELRGSIDLGFGFSYSERCNLRSTLPALELYYAINKNFVDAQTRSSPVS------ 378
           TDEDL EL+G I+LGFGF+  E   L STLPAL+LY+A+N+     Q   SP+S      
Sbjct: 86  TDEDLHELKGCIELGFGFNEEEGQRLCSTLPALDLYFAVNR-----QLSFSPISTPHCSS 140

Query: 377 ----PLEGNALLRTNXXXXXXXXXSENWRISSPGDHPSQVKTRLRHWAQAVACSVKQGY 213
               PL+G+   R++          ++W+I SPGD+P QVKT+LRHWAQAVACSV Q +
Sbjct: 141 ASSLPLDGSLGGRSSSFGSPRSE--DSWKICSPGDNPQQVKTKLRHWAQAVACSVMQSH 197


>tr|A5APB7|A5APB7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_005585 PE=4 SV=1
          Length = 198

 Score =  103 bits (257), Expect = 6e-21
 Identities = 58/119 (48%), Positives = 76/119 (63%), Gaps = 10/119 (8%)
 Frame = -2

Query: 539 TDEDLEELRGSIDLGFGFSYSERCNLRSTLPALELYYAINKNFVDAQTRSSPVS------ 378
           TDEDL EL+G I+LGFGF+  E   L STLPAL+LY+A+N+     Q   SP+S      
Sbjct: 87  TDEDLHELKGCIELGFGFNEEEGQRLCSTLPALDLYFAVNR-----QLSFSPISTPHCSS 141

Query: 377 ----PLEGNALLRTNXXXXXXXXXSENWRISSPGDHPSQVKTRLRHWAQAVACSVKQGY 213
               PL+G+   R++          ++W+I SPGD+P QVKT+LRHWAQAVACSV Q +
Sbjct: 142 ASSLPLDGSLGGRSSSFGSPRSE--DSWKICSPGDNPQQVKTKLRHWAQAVACSVMQSH 198


>tr|Q9MA39|Q9MA39_ARATH T20M3.14 protein (At1g05870) OS=Arabidopsis
           thaliana GN=At1g05870 PE=2 SV=1
          Length = 189

 Score =  102 bits (255), Expect = 1e-20
 Identities = 52/106 (49%), Positives = 71/106 (66%)
 Frame = -2

Query: 539 TDEDLEELRGSIDLGFGFSYSERCNLRSTLPALELYYAINKNFVDAQTRSSPVSPLEGNA 360
           TD+DLE+LRG +DLGFGFSY E   L +TLPALEL Y++++ F+D +   SP    E ++
Sbjct: 85  TDDDLEDLRGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDKQNKSP----ETSS 140

Query: 359 LLRTNXXXXXXXXXSENWRISSPGDHPSQVKTRLRHWAQAVACSVK 222
           +               NW+ISSPGD+P  VK RL++WAQAVAC+V+
Sbjct: 141 VEDCPSPPLVTATPIANWKISSPGDNPDDVKARLKYWAQAVACTVQ 186


>tr|Q2QVG6|Q2QVG6_ORYSJ Os12g0230600 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0230600 PE=2 SV=1
          Length = 215

 Score =  100 bits (249), Expect = 5e-20
 Identities = 53/108 (49%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
 Frame = -2

Query: 539 TDEDLEELRGSIDLGFGFSYSERCNLRSTLPALELYYAINKNFVD--AQTRSSPVSPLEG 366
           TD+DLEEL+G +DLGFGFSY E   L  TLPALEL Y++++ F+D   Q+  SP  P   
Sbjct: 116 TDDDLEELKGCVDLGFGFSYDEIPELCGTLPALELCYSMSQRFLDDHPQSHHSPPPP--- 172

Query: 365 NALLRTNXXXXXXXXXSENWRISSPGDHPSQVKTRLRHWAQAVACSVK 222
                             NW+ISSPGD P +VK RL++WAQAVAC+V+
Sbjct: 173 --------PPPMPSPSIPNWKISSPGDSPDEVKARLKYWAQAVACTVR 212


>tr|B6TMR9|B6TMR9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 162

 Score =  100 bits (249), Expect = 5e-20
 Identities = 52/106 (49%), Positives = 65/106 (61%)
 Frame = -2

Query: 539 TDEDLEELRGSIDLGFGFSYSERCNLRSTLPALELYYAINKNFVDAQTRSSPVSPLEGNA 360
           T++DLEEL+G +DLGFGF+YSE   L  TLPALEL Y++ + F+D Q        LE   
Sbjct: 66  TEDDLEELKGCLDLGFGFAYSEIPELCGTLPALELCYSMTRRFLDEQKAPGQEEELE--- 122

Query: 359 LLRTNXXXXXXXXXSENWRISSPGDHPSQVKTRLRHWAQAVACSVK 222
                           NWRIS PGD P +VK RL++WAQAVAC+VK
Sbjct: 123 ---------PASPPLPNWRISGPGDDPEEVKARLKYWAQAVACTVK 159


>tr|A3CG27|A3CG27_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_034249 PE=4 SV=1
          Length = 183

 Score =  100 bits (249), Expect = 5e-20
 Identities = 53/108 (49%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
 Frame = -2

Query: 539 TDEDLEELRGSIDLGFGFSYSERCNLRSTLPALELYYAINKNFVD--AQTRSSPVSPLEG 366
           TD+DLEEL+G +DLGFGFSY E   L  TLPALEL Y++++ F+D   Q+  SP  P   
Sbjct: 84  TDDDLEELKGCVDLGFGFSYDEIPELCGTLPALELCYSMSQRFLDDHPQSHHSPPPP--- 140

Query: 365 NALLRTNXXXXXXXXXSENWRISSPGDHPSQVKTRLRHWAQAVACSVK 222
                             NW+ISSPGD P +VK RL++WAQAVAC+V+
Sbjct: 141 --------PPPMPSPSIPNWKISSPGDSPDEVKARLKYWAQAVACTVR 180


>tr|Q53NY5|Q53NY5_ORYSJ Os11g0282300 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0282300 PE=4 SV=1
          Length = 232

 Score =  100 bits (248), Expect = 6e-20
 Identities = 51/106 (48%), Positives = 65/106 (61%)
 Frame = -2

Query: 539 TDEDLEELRGSIDLGFGFSYSERCNLRSTLPALELYYAINKNFVDAQTRSSPVSPLEGNA 360
           TD+DLEEL+G +DLGFGFSY E   L  TLPALEL Y++++ F+D    S    P     
Sbjct: 132 TDDDLEELKGCVDLGFGFSYDEIPELCGTLPALELCYSMSQRFLDEHYHSPVAEP----- 186

Query: 359 LLRTNXXXXXXXXXSENWRISSPGDHPSQVKTRLRHWAQAVACSVK 222
                           NW+ISSPGD P +VK RL++WAQAVAC+V+
Sbjct: 187 ---APVAPSSPAQPIANWKISSPGDSPDEVKARLKYWAQAVACTVR 229