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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918150
Clone id YMU001_000110_B07
Library
Length 490
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTAAAGGCATGAGTAACCGCAACTTTTGGGACAAATCAAGGAAGGCTTAACGTGGTACCT
TGAACAAATGCAGTTGTTGGTTGTGGTTAAAGGATGTCAAAGGCCAAGGGACCGAAAGCT
CTTTCCTGTAAATTGAAAAGCTCTCAAGAGTGTGACCTGACAATGTGCTGTATTTCACAC
AAGTGCTGATTGGCGGTCTCCTTGGTTTGGTGGTAAGTTTAGGGCGTTTCTGTTTCTAGG
TGTTTTTATGGCTAATTGTGTCTCCTTCATTACCGCTCTTTGGCGCCACAGTTATCAAGT
CCTTGCGGTCTAGTATCAAAGAATGCGTGTATCCATGCCTATAAGCATATTGACATGTTA
TTAGAATAATGTGTTTACAAATCTGATGCTGTCCCTTGTATTGGCTTGATTCAAGTGTGC
GGGATTTGGTAAACTTGACTACGCAGGGTAGTTGCACAAAGTTTGGACTGCAGCTGCAAT
GGTCTCTGGG
■■Homology search results ■■ -
sp_hit_id Q5P3E3
Definition sp|Q5P3E3|KUP_AZOSE Probable potassium transport system protein kup OS=Azoarcus sp. (strain EbN1)
Align length 28
Score (bit) 29.6
E-value 7.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918150|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_B07.
         (490 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5P3E3|KUP_AZOSE Probable potassium transport system protein ...    30   7.8  
sp|Q9R160|ADA24_MOUSE ADAM 24 OS=Mus musculus GN=Adam24 PE=1 SV=1      30   7.8  

>sp|Q5P3E3|KUP_AZOSE Probable potassium transport system protein kup
           OS=Azoarcus sp. (strain EbN1) GN=kup PE=3 SV=1
          Length = 640

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +2

Query: 194 RSPWFGGKFRAFLFLGVFMANCVSFITA 277
           R+ W  G+ +A LFLGVF+A  V+F +A
Sbjct: 405 RALWGWGRLQAGLFLGVFLAVDVAFFSA 432


>sp|Q9R160|ADA24_MOUSE ADAM 24 OS=Mus musculus GN=Adam24 PE=1 SV=1
          Length = 761

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 124 SCKLKSSQECDLTMCCISHKC 186
           SC L+S  +CD  +CC +HKC
Sbjct: 437 SCTLRSKAKCDTGLCC-NHKC 456
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918150|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_B07.
         (490 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******