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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918151
Clone id YMU001_000110_B08
Library
Length 507
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAACACGACTTCCTACTCTGCTCTCGCTCCTCTCTTTCTGCTGCTGCTGCTCTTCAGTTG
GAGCAAGCGTAACCTAGCCCCCATTTCCACCTCGCTGCCACCAAGATCATCGTCTGCTTC
ACCTTCTTCCCAGGTACTTTTCTCTCACTGCATCGCTCACATTTTCTGTCGCGGCTTTTT
CTGTCTCCTATTTTTAGGTCTAGCAGGTGTAAGCAGAGGCGCCGATTTCATGCAGCAGCA
GAAACTGGCGTAGCAGCCTTGCCTTGGAACGGGTAAATTCCCGGGGCTTTCATGGAGCAT
TCTGCTCCATATTTGTCGGAAATCTGATTAATTGGGTACACAGATAAAGGGTTTCTGTGG
CAGGTAAGTAGGGAGATGCTGCAAATGGCCGAAGATTGTGTTTGTTCACCATGAACGACT
TGCAGGCAGCGAGAAGGGGTTAGGGCTTTTCTACTGCGAGACCATTACAGAGGGGCTGAA
TGTCGGATCAGAAGTCTTTGTAGATTG
■■Homology search results ■■ -
sp_hit_id Q9HCU4
Definition sp|Q9HCU4|CELR2_HUMAN Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens
Align length 29
Score (bit) 30.4
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918151|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_B08.
         (507 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9HCU4|CELR2_HUMAN Cadherin EGF LAG seven-pass G-type recepto...    30   5.0  
sp|Q8NE63|HIPK4_HUMAN Homeodomain-interacting protein kinase 4 O...    30   6.5  
sp|Q9QYP2|CELR2_RAT Cadherin EGF LAG seven-pass G-type receptor ...    30   6.6  
sp|Q9PD73|NTPA_XYLFA Nucleoside-triphosphatase OS=Xylella fastid...    30   8.4  
sp|Q5R7N4|CXXC5_PONAB CXXC-type zinc finger protein 5 OS=Pongo a...    30   8.4  
sp|Q7LFL8|CXXC5_HUMAN CXXC-type zinc finger protein 5 OS=Homo sa...    30   8.4  
sp|Q32LB3|CXXC5_BOVIN CXXC-type zinc finger protein 5 OS=Bos tau...    30   8.4  
sp|Q6N045|ZNP12_HUMAN Zinc finger protein ZnFP12 OS=Homo sapiens...    30   8.6  
sp|Q8BIQ8|ZN770_MOUSE Zinc finger protein 770 OS=Mus musculus GN...    30   8.6  

>sp|Q9HCU4|CELR2_HUMAN Cadherin EGF LAG seven-pass G-type receptor 2
            OS=Homo sapiens GN=CELSR2 PE=1 SV=1
          Length = 2923

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 403  CSP*TTCRQREGVRAFLLRDHYRGAECRI 489
            C P   CR REG    L RD Y G  C +
Sbjct: 1297 CGPHGRCRSREGGYTCLCRDGYTGEHCEV 1325


>sp|Q8NE63|HIPK4_HUMAN Homeodomain-interacting protein kinase 4
           OS=Homo sapiens GN=HIPK4 PE=2 SV=1
          Length = 616

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 481 IQPLCNGLAVEKP*PLLAACKSFMVNKHNLRPFAASPYLPATETLYLCTQLIR 323
           ++ +C    + KP  L AACK+    K N  P AA+P+   +   YL    +R
Sbjct: 224 VRYICETQGLPKPHLLHAACKAHHFFKRNPHPDAANPWQLKSSADYLAETKVR 276


>sp|Q9QYP2|CELR2_RAT Cadherin EGF LAG seven-pass G-type receptor 2
           (Fragment) OS=Rattus norvegicus GN=Celsr2 PE=2 SV=1
          Length = 2144

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 403 CSP*TTCRQREGVRAFLLRDHYRGAECRI 489
           C P   CR REG    L RD Y G  C +
Sbjct: 522 CGPHGHCRSREGGYTCLCRDGYTGEHCEV 550


>sp|Q9PD73|NTPA_XYLFA Nucleoside-triphosphatase OS=Xylella
           fastidiosa GN=XF_1506 PE=3 SV=2
          Length = 199

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -2

Query: 287 APGIYPFQGKAATPVSAAA*NRRLCLHLLDLKIGDRKSR 171
           APG+Y  +  A TP  AAA N +L   L D+ +G R +R
Sbjct: 80  APGLYSAR-YAGTPTDAAANNAKLLEMLRDVPVGRRSAR 117


>sp|Q5R7N4|CXXC5_PONAB CXXC-type zinc finger protein 5 OS=Pongo
           abelii GN=CXXC5 PE=2 SV=1
          Length = 322

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
 Frame = -2

Query: 305 AECSMKAPGI--YPFQGKAATPVSAAA*NRR---------------LCLHLLDLKIGDRK 177
           AE ++   G+  YP QG+ A+ +S+    R+                C    + K G + 
Sbjct: 231 AESALHMAGLAEYPMQGELASAISSGKKKRKRCGMCAPCRRRINCEQCSSCRNRKTGHQI 290

Query: 176 SRDRKCERCSERKVPGKKVKQTMILVAARWKW 81
            + RKCE    +K P   +++ M+   A ++W
Sbjct: 291 CKFRKCEEL--KKKPSAALEKVMLPTGAAFRW 320


>sp|Q7LFL8|CXXC5_HUMAN CXXC-type zinc finger protein 5 OS=Homo
           sapiens GN=CXXC5 PE=2 SV=1
          Length = 322

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
 Frame = -2

Query: 305 AECSMKAPGI--YPFQGKAATPVSAAA*NRR---------------LCLHLLDLKIGDRK 177
           AE ++   G+  YP QG+ A+ +S+    R+                C    + K G + 
Sbjct: 231 AESALHMAGLAEYPMQGELASAISSGKKKRKRCGMCAPCRRRINCEQCSSCRNRKTGHQI 290

Query: 176 SRDRKCERCSERKVPGKKVKQTMILVAARWKW 81
            + RKCE    +K P   +++ M+   A ++W
Sbjct: 291 CKFRKCEEL--KKKPSAALEKVMLPTGAAFRW 320


>sp|Q32LB3|CXXC5_BOVIN CXXC-type zinc finger protein 5 OS=Bos taurus
           GN=CXXC5 PE=2 SV=2
          Length = 317

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
 Frame = -2

Query: 305 AECSMKAPGI--YPFQGKAATPVSAAA*NRR---------------LCLHLLDLKIGDRK 177
           AE ++   G+  YP QG+ A+ +S+    R+                C    + K G + 
Sbjct: 226 AESALHMAGLAEYPMQGELASAISSGKKKRKRCGMCAPCRRRINCEQCSSCRNRKTGHQI 285

Query: 176 SRDRKCERCSERKVPGKKVKQTMILVAARWKW 81
            + RKCE    +K P   +++ M+   A ++W
Sbjct: 286 CKFRKCEEL--KKKPSAALEKVMLPTGAAFRW 315


>sp|Q6N045|ZNP12_HUMAN Zinc finger protein ZnFP12 OS=Homo sapiens
           PE=2 SV=2
          Length = 540

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
 Frame = -1

Query: 390 GHLQHLPTYLPQKPFICVPN*SDFRQIWSRMLHE--SPGNLPVPRQGCYASFCCC 232
           G   H  T+   KPF C      FR  +S   HE    G  P   + C  +F CC
Sbjct: 361 GFQAHESTHTGDKPFECKKCGKAFRYYYSAQRHERTHTGEKPYKCKECGKAFYCC 415


>sp|Q8BIQ8|ZN770_MOUSE Zinc finger protein 770 OS=Mus musculus
           GN=Znf770 PE=2 SV=1
          Length = 705

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
 Frame = -1

Query: 429 LPASRSW*TNTIFGHLQ-------HLPTYLPQKPFICVPN*SDFRQIWSRMLHESPGNLP 271
           LP +R +  N  F H +       H   +  QKPF C     +FRQ+     H+   NLP
Sbjct: 25  LPRNRPYICNICFKHFETPSKLARHYLIHTGQKPFECDVCHKNFRQLVHLERHQLTHNLP 84

Query: 270 VPRQGCYASF 241
                C   F
Sbjct: 85  FSCNICQRHF 94
tr_hit_id Q1PQC0
Definition tr|Q1PQC0|Q1PQC0_DROMI CG2175 (Fragment) OS=Drosophila miranda
Align length 64
Score (bit) 33.9
E-value 4.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918151|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_B08.
         (507 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1PQC0|Q1PQC0_DROMI CG2175 (Fragment) OS=Drosophila miranda G...    34   4.7  
tr|A0D271|A0D271_PARTE Chromosome undetermined scaffold_35, whol...    33   6.0  
tr|A8Q3L0|A8Q3L0_MALGO Putative uncharacterized protein OS=Malas...    33   8.0  

>tr|Q1PQC0|Q1PQC0_DROMI CG2175 (Fragment) OS=Drosophila miranda
           GN=CG2175 PE=4 SV=1
          Length = 318

 Score = 33.9 bits (76), Expect = 4.7
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = -1

Query: 447 SPNPFSLPASRSW*TNTIFGHLQH-LPTYLPQKPFICVPN*SDF----RQIWSRMLHESP 283
           +PNPFS     ++  N + G  Q  LP   P  P   +P+  DF    RQ+W      +P
Sbjct: 31  APNPFSFLTPNNFDVNQLLGQAQQALPPMPPMPPMPAMPSNVDFFSNLRQMWPGAPPANP 90

Query: 282 GNLP 271
           G  P
Sbjct: 91  GPAP 94


>tr|A0D271|A0D271_PARTE Chromosome undetermined scaffold_35, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00012644001 PE=4 SV=1
          Length = 852

 Score = 33.5 bits (75), Expect = 6.0
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
 Frame = -2

Query: 461 SRSRKALTPSRCLQVVHGEQTQSSAICSISLLTCHRNPLSVYPINQ-----ISDKYGAEC 297
           S  +K+ T S+ L+   GE++QS    S SLL   ++ +++  INQ     + +K   E 
Sbjct: 173 SHRKKSRTSSKSLKFSDGEESQSKKSISHSLLVIPKSIITIDLINQTFSNKLENKVQTEV 232

Query: 296 SMKAPGI---YPFQ 264
           + KAP +   Y FQ
Sbjct: 233 ADKAPSLTINYQFQ 246


>tr|A8Q3L0|A8Q3L0_MALGO Putative uncharacterized protein
           OS=Malassezia globosa (strain ATCC 96807 / CBS 7966)
           GN=MGL_2436 PE=4 SV=1
          Length = 664

 Score = 33.1 bits (74), Expect = 8.0
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = -1

Query: 507 QSTKTSDPTFSPSVMVSQ*KSPNPFSLPASRSW*TNTIFGHLQHLPTYLPQKP 349
           Q +    PTFSPSV+ SQ  SP+P  LP+S     +    H   LPT   + P
Sbjct: 274 QRSSLPSPTFSPSVLRSQSSSPSP--LPSSPVMSPSHSHSHPHTLPTSCQEVP 324