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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918152
Clone id YMU001_000110_B09
Library
Length 458
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATATCAAAATTTACAAAGCCGCAACCTCTGTGAAGATGAGTCGGTGCTACATACTACATA
GAATCTCAACCCAGAGCTAGTGGTCATGGACAGCATTATATCATCTCTTGGACAACGGTC
GGGTGCACCCAAATGTATCCCCCTTGAGTCCATAGACCCTCTGAGGGATGTCCATAATAC
CCCCCTTGAATGCGCGCCATGGTAGGTAGTTTGTACATACAGTTAACGGACTGAGGACTT
AAATCAACAGCTTCACCAATTCTGAATACTATACAAGCGTGTTACTAATATCCAATTCCT
GTCCATCCTTACAAGAGACAGACTGGCGCCGCCGGTGCATCCGCTGGACCATTCATTACA
TGCATCTCTGTGGCATGCATTTGCACGCACAGAAAATTGTCTTGATCCACCACGTCATCC
AGAAATATAAACCACTCACTCAAACATTTACACCATTG
■■Homology search results ■■ -
sp_hit_id Q9D5Z5
Definition sp|Q9D5Z5|ZMY17_MOUSE Zinc finger MYND domain-containing protein 17 OS=Mus musculus
Align length 120
Score (bit) 33.1
E-value 0.59
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918152|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_B09.
         (458 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9D5Z5|ZMY17_MOUSE Zinc finger MYND domain-containing protein...    33   0.59 
sp|Q8GB18|CAIC_PROSL Probable crotonobetaine/carnitine-CoA ligas...    32   1.7  

>sp|Q9D5Z5|ZMY17_MOUSE Zinc finger MYND domain-containing protein 17
           OS=Mus musculus GN=Zmynd17 PE=2 SV=1
          Length = 446

 Score = 33.1 bits (74), Expect = 0.59
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
 Frame = -3

Query: 372 HRDACNEWSSGCTGGASLSLVRMDR--NWILVTRLY------------SIQNW*SC*FKS 235
           HR  C E          L LV +DR   W+LVT  +             IQNW +     
Sbjct: 144 HRKVCRE----------LRLVAVDRVMEWLLVTGDFVLPSGPWPWLPEDIQNWDTW---F 190

Query: 234 SVR*LYVQTTYH---GAHSRGVLWTSLRGSMDSRGIHLGAPDRCPRDDIMLSMTTSSGLR 64
           S+R L +++T +   G+HS  +LW SL        +  G+  R   D +   +T   GLR
Sbjct: 191 SMRGLQLESTLNALLGSHSMTMLWASLGRPRPDPDVLHGSLKRLMTDVLSRPLTLGLGLR 250


>sp|Q8GB18|CAIC_PROSL Probable crotonobetaine/carnitine-CoA ligase
           OS=Proteus sp. (strain LE138) GN=caiC PE=3 SV=1
          Length = 518

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 281 VTNIQFLSILTRDRLAPPVHPLDHSLHASLWHAFARTENCL 403
           + + Q   ++T D  +P   P+ H  H+ L   F  TENCL
Sbjct: 105 INHCQAHFVVTSDNFSPIYQPMLHDKHSPLTQLFLITENCL 145
tr_hit_id Q9I0Z4
Definition tr|Q9I0Z4|Q9I0Z4_PSEAE Probable transcriptional regulator OS=Pseudomonas aeruginosa
Align length 35
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918152|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_B09.
         (458 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9I0Z4|Q9I0Z4_PSEAE Probable transcriptional regulator OS=Pse...    35   1.4  
tr|Q02MT7|Q02MT7_PSEAB Putative transcriptional regulator OS=Pse...    35   1.4  
tr|B7V867|B7V867_PSEAE Probable transcriptional regulator OS=Pse...    35   1.4  
tr|A3L8M6|A3L8M6_PSEAE Putative uncharacterized protein OS=Pseud...    35   1.4  
tr|A3KUP8|A3KUP8_PSEAE Putative uncharacterized protein OS=Pseud...    35   1.4  
tr|Q2HSK3|Q2HSK3_MEDTR Cyclin-like F-box OS=Medicago truncatula ...    35   2.4  
tr|B6G5H9|B6G5H9_9ACTN Putative uncharacterized protein OS=Colli...    34   3.2  
tr|B8PE05|B8PE05_9APHY Predicted protein OS=Postia placenta Mad-...    33   9.2  

>tr|Q9I0Z4|Q9I0Z4_PSEAE Probable transcriptional regulator
           OS=Pseudomonas aeruginosa GN=PA2488 PE=4 SV=1
          Length = 254

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 329 PPVHPLDHSLHASL--WHAFARTENCLDPPRHPEI 427
           PP HP     H SL  W A+   E+C D PRHP +
Sbjct: 60  PPGHPHSAHSHGSLAGWSAYLAAEHCRDLPRHPGV 94


>tr|Q02MT7|Q02MT7_PSEAB Putative transcriptional regulator
           OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
           GN=PA14_32460 PE=4 SV=1
          Length = 255

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 329 PPVHPLDHSLHASL--WHAFARTENCLDPPRHPEI 427
           PP HP     H SL  W A+   E+C D PRHP +
Sbjct: 60  PPGHPHSAHSHGSLAGWSAYLAAEHCRDLPRHPGV 94


>tr|B7V867|B7V867_PSEAE Probable transcriptional regulator
           OS=Pseudomonas aeruginosa LESB58 GN=PLES_28081 PE=4 SV=1
          Length = 254

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 329 PPVHPLDHSLHASL--WHAFARTENCLDPPRHPEI 427
           PP HP     H SL  W A+   E+C D PRHP +
Sbjct: 60  PPGHPHSAHSHGSLAGWSAYLAAEHCRDLPRHPGV 94


>tr|A3L8M6|A3L8M6_PSEAE Putative uncharacterized protein
           OS=Pseudomonas aeruginosa 2192 GN=PA2G_01598 PE=4 SV=1
          Length = 254

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 329 PPVHPLDHSLHASL--WHAFARTENCLDPPRHPEI 427
           PP HP     H SL  W A+   E+C D PRHP +
Sbjct: 60  PPGHPHSAHSHGSLAGWSAYLAAEHCRDLPRHPGV 94


>tr|A3KUP8|A3KUP8_PSEAE Putative uncharacterized protein
           OS=Pseudomonas aeruginosa C3719 GN=PACG_01404 PE=4 SV=1
          Length = 254

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 329 PPVHPLDHSLHASL--WHAFARTENCLDPPRHPEI 427
           PP HP     H SL  W A+   E+C D PRHP +
Sbjct: 60  PPGHPHSAHSHGSLAGWSAYLAAEHCRDLPRHPGV 94


>tr|Q2HSK3|Q2HSK3_MEDTR Cyclin-like F-box OS=Medicago truncatula
           GN=MtrDRAFT_AC151521g44v2 PE=4 SV=2
          Length = 262

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -3

Query: 174 WTSLRGSMDSRGIHLGAPDRCPRDDIMLSMTTSSGLRFYVVCSTDSSSQRLRLCK 10
           W   +  +  R IH+G  DRCP +++ L   T+  L++   C  +    RL +C+
Sbjct: 64  WNICKEPLMWRTIHMGYNDRCPCNNMDLHFCTNDLLKYIAECGCNLRRIRLTICQ 118


>tr|B6G5H9|B6G5H9_9ACTN Putative uncharacterized protein
           OS=Collinsella intestinalis DSM 13280 GN=COLINT_01140
           PE=4 SV=1
          Length = 574

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 22/58 (37%), Positives = 30/58 (51%)
 Frame = -3

Query: 222 LYVQTTYHGAHSRGVLWTSLRGSMDSRGIHLGAPDRCPRDDIMLSMTTSSGLRFYVVC 49
           + + T   G H+RG +  +L   +D    HL   D  PRD  +L M  +SGLR YV C
Sbjct: 480 ILLDTRTAGEHARGAIEGALHIPVDELREHL---DELPRDKCLL-MFCASGLRSYVAC 533


>tr|B8PE05|B8PE05_9APHY Predicted protein OS=Postia placenta Mad-698-R
            GN=POSPLDRAFT_106616 PE=4 SV=1
          Length = 2007

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 434  WFIFLDDVVDQDNFLCVQMHATEMHVMNGPADAPAAPV 321
            WFIF+  VV+ +++    +HA++ H  N P  AP  PV
Sbjct: 1432 WFIFVKSVVEMEDWYHALVHASD-HPANAPTLAPLEPV 1468