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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918160
Clone id YMU001_000110_C05
Library
Length 370
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TATCATAGGGACTTATCATTGTGTTACATGAGGAAATCTTGAAAGATTTCATGCATGACA
AAGTTTCTCCATCTTTAATGTCACCAAAAACATTAAGAAGACTCTTTACAAAATCAACAA
AGGTCCCTGTATTTAGCTGAACTCAGGATAGTTCGGAGCTTGAGAAATAGACCTAAAAAC
AGCACTTGTTACTTCTAATGCGGCTACCAGCATATATGGTGGTAACAGGCATATAGAATA
GTACGTGGGTTTGGTGCATTGATGGCACCGCCCTGGCATAATGTGCCTCCCATGTAAAAG
ATTATATATTACAACCCCCGGGACATGGGGGTACAGACACACTATCGTTGTATTCTTAAC
ACATCCTCTA
■■Homology search results ■■ -
sp_hit_id P63340
Definition sp|P63340|YQEG_ECOLI Inner membrane transport protein yqeG OS=Escherichia coli (strain K12)
Align length 105
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918160|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_C05.
         (370 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P63340|YQEG_ECOLI Inner membrane transport protein yqeG OS=Es...    30   2.9  
sp|P63341|YQEG_ECOL6 Inner membrane transport protein yqeG OS=Es...    30   2.9  
sp|P63342|YQEG_ECO57 Inner membrane transport protein yqeG OS=Es...    30   2.9  
sp|Q7MQC1|DAPF_VIBVY Diaminopimelate epimerase OS=Vibrio vulnifi...    30   2.9  
sp|Q8DD81|DAPF_VIBVU Diaminopimelate epimerase OS=Vibrio vulnifi...    30   2.9  
sp|P27283|POLN_SINDO Non-structural polyprotein OS=Sindbis virus...    29   6.4  

>sp|P63340|YQEG_ECOLI Inner membrane transport protein yqeG
           OS=Escherichia coli (strain K12) GN=yqeG PE=1 SV=1
          Length = 409

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
 Frame = -2

Query: 345 IVCLYPHVPGVVIYNL----LHGRHIMPGRCHQCTKPTYYSICL------------LPPY 214
           +V  + H P +  + +     +G H M  +C +  K  Y  IC+            +PP 
Sbjct: 201 MVFAFSHTPIISTFAIDRREKYGEHAMD-KCKKIMKVAYLIICISVLFFVFSCLLSIPPS 259

Query: 213 MLVAALEVTSAVFRSISQAPNYPEFS*IQGPLLIL*RVFLMFLVT 79
            + AA E    +  ++S  PN P +  I G ++ +  +   FL T
Sbjct: 260 YIEAAKEEGVTILSALSMLPNAPAWLSISGIIVAVVAMSKSFLGT 304


>sp|P63341|YQEG_ECOL6 Inner membrane transport protein yqeG
           OS=Escherichia coli O6 GN=yqeG PE=3 SV=1
          Length = 409

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
 Frame = -2

Query: 345 IVCLYPHVPGVVIYNL----LHGRHIMPGRCHQCTKPTYYSICL------------LPPY 214
           +V  + H P +  + +     +G H M  +C +  K  Y  IC+            +PP 
Sbjct: 201 MVFAFSHTPIISTFAIDRREKYGEHAMD-KCKKIMKVAYLIICISVLFFVFSCLLSIPPS 259

Query: 213 MLVAALEVTSAVFRSISQAPNYPEFS*IQGPLLIL*RVFLMFLVT 79
            + AA E    +  ++S  PN P +  I G ++ +  +   FL T
Sbjct: 260 YIEAAKEEGVTILSALSMLPNAPAWLSISGIIVAVVAMSKSFLGT 304


>sp|P63342|YQEG_ECO57 Inner membrane transport protein yqeG
           OS=Escherichia coli O157:H7 GN=yqeG PE=3 SV=1
          Length = 409

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
 Frame = -2

Query: 345 IVCLYPHVPGVVIYNL----LHGRHIMPGRCHQCTKPTYYSICL------------LPPY 214
           +V  + H P +  + +     +G H M  +C +  K  Y  IC+            +PP 
Sbjct: 201 MVFAFSHTPIISTFAIDRREKYGEHAMD-KCKKIMKVAYLIICISVLFFVFSCLLSIPPS 259

Query: 213 MLVAALEVTSAVFRSISQAPNYPEFS*IQGPLLIL*RVFLMFLVT 79
            + AA E    +  ++S  PN P +  I G ++ +  +   FL T
Sbjct: 260 YIEAAKEEGVTILSALSMLPNAPAWLSISGIIVAVVAMSKSFLGT 304


>sp|Q7MQC1|DAPF_VIBVY Diaminopimelate epimerase OS=Vibrio vulnificus
           (strain YJ016) GN=dapF PE=3 SV=1
          Length = 276

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 23/80 (28%), Positives = 33/80 (41%)
 Frame = +2

Query: 86  KNIKKTLYKINKGPCI*LNSG*FGA*EIDLKTALVTSNAATSIYGGNRHIE*YVGLVH*W 265
           + I+  +Y+   G      SG  GA  + +   L+  N   S+ GG+ HI         W
Sbjct: 202 EQIRLRVYERGAGETQACGSGACGAVAVGILQGLLDENVTVSLPGGDLHIH--------W 253

Query: 266 HRPGIMCLPCKRLYITTPGT 325
             PG      K LY+T P T
Sbjct: 254 QGPG------KPLYMTGPAT 267


>sp|Q8DD81|DAPF_VIBVU Diaminopimelate epimerase OS=Vibrio vulnificus
           GN=dapF PE=3 SV=2
          Length = 276

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 23/80 (28%), Positives = 33/80 (41%)
 Frame = +2

Query: 86  KNIKKTLYKINKGPCI*LNSG*FGA*EIDLKTALVTSNAATSIYGGNRHIE*YVGLVH*W 265
           + I+  +Y+   G      SG  GA  + +   L+  N   S+ GG+ HI         W
Sbjct: 202 EQIRLRVYERGAGETQACGSGACGAVAVGILQGLLDENVTVSLPGGDLHIH--------W 253

Query: 266 HRPGIMCLPCKRLYITTPGT 325
             PG      K LY+T P T
Sbjct: 254 QGPG------KPLYMTGPAT 267


>sp|P27283|POLN_SINDO Non-structural polyprotein OS=Sindbis virus
            subtype Ockelbo (strain Edsbyn 82-5) PE=2 SV=1
          Length = 2514

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 266  AINAPNPRTILYACYHHICW 207
            AIN+P PRT  ++C  ++CW
Sbjct: 1003 AINSPAPRTNPFSCKTNVCW 1022
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918160|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_C05.
         (370 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******