| BP918164 |
| Clone id |
YMU001_000110_C09 |
| Library |
YMU01 |
| Length |
563 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000110_C09. |
| Accession |
BP918164 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
TGCAGCATTCAGCAGGTAAGAGGGCTTGCCAACACAATGGTAACAGAGATAGTGAAGGTG
GCGTTGGAGCGAAAGAATCGCGACGCATTTCCAGACAGTGTATTGCTATCATACCTTATA
CACAGGAGTACATCAGTGTTGGGCAAGAGGGTTGTCGAGCACCTTCATCTTATGGATAAT
GCCGACTCATATGTGCATTCCCTTATTGGATCTCAACAGACTTCCTTTTTCTTGAAGAAG
ACAAGGGCAGCTTATTCTGTGATTCATGGAAACAGCAAGAGCAAGAGGTGGGAGATTGTG
ATGCGGGCGATTCGGCGGGACATTTGCGCATCAGAAGGTGATGCGGGGGTCTACTCTGAT
TGTGACTCTTCCATATAGAAGCCTCATGACCCTCATTTGAGCAGGACTCAGAGGGGTTTA
CCAGTGGTCTGCTTGACGGCCCTCAATGGAATGGTCGGATTTGCAGGGATGCATTCAACC
TCTGTATATGAGCACACAATCTGCTTGGGTCTTTCCTTGGGTCTTTGCAAACAATTCATC
GTGTAGGTAACATTCATTGATGT |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q8BPM6 |
| Definition |
sp|Q8BPM6|RIC3_MOUSE Protein RIC-3 OS=Mus musculus |
| Align length |
62 |
| Score (bit) |
32.3 |
| E-value |
1.7 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9RR70 |
| Definition |
tr|A9RR70|A9RR70_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
123 |
| Score (bit) |
90.9 |
| E-value |
4.0e-17 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918164|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_C09.
(563 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A9RR70|A9RR70_PHYPA Predicted protein OS=Physcomitrella paten... 91 4e-17
tr|A9SME5|A9SME5_PHYPA Predicted protein OS=Physcomitrella paten... 91 6e-17
tr|A9T884|A9T884_PHYPA Predicted protein OS=Physcomitrella paten... 65 3e-09
tr|A7PWH0|A7PWH0_VITVI Chromosome chr8 scaffold_34, whole genome... 61 4e-08
tr|Q9M2K7|Q9M2K7_ARATH Putative uncharacterized protein F28O9.25... 40 0.067
tr|Q8W4L8|Q8W4L8_ARATH Putative uncharacterized protein At3g5740... 40 0.067
tr|A9T8M9|A9T8M9_PHYPA Predicted protein (Fragment) OS=Physcomit... 40 0.088
tr|A8NQI3|A8NQI3_BRUMA EB module family protein OS=Brugia malayi... 34 4.8
tr|A9RBF9|A9RBF9_PHYPA Predicted protein (Fragment) OS=Physcomit... 33 8.2
>tr|A9RR70|A9RR70_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_160579 PE=4 SV=1
Length = 681
Score = 90.9 bits (224), Expect = 4e-17
Identities = 54/123 (43%), Positives = 78/123 (63%), Gaps = 8/123 (6%)
Frame = +1
Query: 7 IQQVRGLANTMVTEIVKVALERKNRDAFPDSVLLSYLIHRSTSVLGKRVVEHLHLMDNAD 186
I+ VR LAN M TEIV++ALE+KNR F D +++YL+H+S SVLGKRV++HL ++ N +
Sbjct: 522 IEYVRKLANKMTTEIVRIALEKKNRRPFHDKAVINYLVHQS-SVLGKRVLDHLKIVPNRN 580
Query: 187 SYVHSLIGSQQTSFFLKK--TRAAYSVIHG------NSKSKRWEIVMRAIRRDICASEGD 342
S VHSL G++Q F K+ Y++I G + S+R + AI DIC S +
Sbjct: 581 SAVHSLPGTKQPHVFWKRKGKSTRYAIIQGLETARSVADSERRCKITAAIHNDICRSPAE 640
Query: 343 AGV 351
+ V
Sbjct: 641 SQV 643
>tr|A9SME5|A9SME5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_165707 PE=4 SV=1
Length = 598
Score = 90.5 bits (223), Expect = 6e-17
Identities = 52/133 (39%), Positives = 82/133 (61%), Gaps = 7/133 (5%)
Frame = +1
Query: 7 IQQVRGLANTMVTEIVKVALERKNRDAFPDSVLLSYLIHRSTSVLGKRVVEHLHLMDNAD 186
I+ VR +A M TEIV+VAL RK RDAF +LS+L+H+S SVLGK+V HL + D+
Sbjct: 459 IRPVRSVAMAMATEIVRVALLRKTRDAFNPEAVLSFLVHKS-SVLGKKVASHLQVHDSGM 517
Query: 187 SYVHSLIG---SQQTSFFLKKTRAAYSVIHG----NSKSKRWEIVMRAIRRDICASEGDA 345
S V+ L G + F ++ + ++V+HG +R E +++++ +DIC S+ D
Sbjct: 518 SPVNLLPGPPRGDDFNDFFRREDSRFAVLHGFKNEGVTERRREKILKSLWQDICNSQNDV 577
Query: 346 GVYSDCDSSI*KP 384
+Y+DC S++ P
Sbjct: 578 EIYTDCYSAVSAP 590
>tr|A9T884|A9T884_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_168589 PE=4 SV=1
Length = 584
Score = 65.1 bits (157), Expect = 3e-09
Identities = 35/109 (32%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Frame = +1
Query: 7 IQQVRGLANTMVTEIVKVALERKNRDAFPDSVLLSYLIHRSTSVLGKRVVEHLHLMDNAD 186
+ VRGLA M +EIV++A+E K+R F D +L+ +H +++ K+ EH+ ++ N D
Sbjct: 471 VHYVRGLAMKMTSEIVRMAIEHKSRRLFHDKAVLNMWVHNKATIV-KKFAEHMKVVRNKD 529
Query: 187 SYVHSLIGSQQTSFFLKK--TRAAYSVIHGNSKSKRWEIVMRAIRRDIC 327
S VHS GS+Q + +K R+ Y ++H ++ +R+++C
Sbjct: 530 SVVHSAQGSRQPFVYWRKRNPRSRYLIVHQEDHDG-----VQELRQELC 573
>tr|A7PWH0|A7PWH0_VITVI Chromosome chr8 scaffold_34, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00025609001
PE=4 SV=1
Length = 511
Score = 61.2 bits (147), Expect = 4e-08
Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Frame = +1
Query: 16 VRGLANTMVTEIVKVALERKNRDAFPDSVLLSYLIHRSTSVLGKRVVEHLHLMDNADSYV 195
VR L+N M+ EIV+ A++RK + F +SVLL+ L+ S VL K V + DS
Sbjct: 404 VRRLSNAMLIEIVRAAMQRKGKSPFSESVLLNQLV--SNGVLSKGVDLTISNESVPDSNS 461
Query: 196 HSLIGSQQTSFFLKKTRAAYSVI-HGNSKSKRWEIVMRAIRRDICASEGDAGVYSDC 363
+ + S TS + + YSV+ GNS +I+M +DIC+S D+ VYSDC
Sbjct: 462 LAGVNSNSTS---SLSLSKYSVVQRGNSNRDLNQIIM----KDICSSTLDSSVYSDC 511
>tr|Q9M2K7|Q9M2K7_ARATH Putative uncharacterized protein F28O9.250
OS=Arabidopsis thaliana GN=F28O9.250 PE=4 SV=1
Length = 474
Score = 40.4 bits (93), Expect = 0.067
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Frame = +1
Query: 16 VRGLANTMVTEIVKVALER--KNRDAFPDSVLLSYLIHRSTSVLGKRVVEHLHLMDNADS 189
+R L+++M TEIV+ +++ K +++ +SV+LS L V ++H+ N +
Sbjct: 359 IRRLSSSMHTEIVRATIQQQHKKKNSVTESVVLSQL------------VGNVHMTKNFEV 406
Query: 190 YVHSLIGSQQTSFFLKKTR--AAYSVIH--------GNSKSKRWEIVMRAIRRDICASEG 339
+ + +S +TR AA S+ + GNS S +M I + IC+ E
Sbjct: 407 VTSESVVPEASSLAELRTRNSAASSIKNHDIIQRGGGNSNSNHIIDIMAIIMKRICSCEL 466
Query: 340 DAGVYSDC 363
D+ VY+ C
Sbjct: 467 DSSVYNYC 474
>tr|Q8W4L8|Q8W4L8_ARATH Putative uncharacterized protein At3g57400;
F28O9.250 (Putative uncharacterized protein At3g57400)
OS=Arabidopsis thaliana GN=At3g57400/F28O9.250 PE=2 SV=1
Length = 476
Score = 40.4 bits (93), Expect = 0.067
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Frame = +1
Query: 16 VRGLANTMVTEIVKVALER--KNRDAFPDSVLLSYLIHRSTSVLGKRVVEHLHLMDNADS 189
+R L+++M TEIV+ +++ K +++ +SV+LS L V ++H+ N +
Sbjct: 361 IRRLSSSMHTEIVRATIQQQHKKKNSVTESVVLSQL------------VGNVHMTKNFEV 408
Query: 190 YVHSLIGSQQTSFFLKKTR--AAYSVIH--------GNSKSKRWEIVMRAIRRDICASEG 339
+ + +S +TR AA S+ + GNS S +M I + IC+ E
Sbjct: 409 VTSESVVPEASSLAELRTRNSAASSIKNHDIIQRGGGNSNSNHIIDIMAIIMKRICSCEL 468
Query: 340 DAGVYSDC 363
D+ VY+ C
Sbjct: 469 DSSVYNYC 476
>tr|A9T8M9|A9T8M9_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_4931 PE=4 SV=1
Length = 268
Score = 40.0 bits (92), Expect = 0.088
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +1
Query: 7 IQQVRGLANTMVTEIVKVALERKNRDAFPDSVLLSYLI 120
++ VR L M TEIV+VAL RKNR F ++LSYL+
Sbjct: 231 MRPVRSLTTAMATEIVRVALLRKNRMPFNVEIVLSYLV 268
>tr|A8NQI3|A8NQI3_BRUMA EB module family protein OS=Brugia malayi
GN=Bm1_07680 PE=4 SV=1
Length = 422
Score = 34.3 bits (77), Expect = 4.8
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = -2
Query: 439 PSSRPLVNPSESCSNEGHEASIWKSHNQSRPP----HHLLMRKCPAESPASQSPTSCSCC 272
P + PL NPS++C+ + ++ + +P H + ++CP S + C C
Sbjct: 308 PVTHPLRNPSQTCTRDCESEALSRDTTCLKPVALQGHCFIQKQCPINSGCYRGRCQCKCG 367
Query: 271 FHESQNK 251
F + + +
Sbjct: 368 FKQEKQR 374
>tr|A9RBF9|A9RBF9_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_24514 PE=4 SV=1
Length = 251
Score = 33.5 bits (75), Expect = 8.2
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 7 IQQVRGLANTMVTEIVKVALERKNR 81
+Q VRGL+ M +EIV+VA+ERK+R
Sbjct: 225 VQYVRGLSIKMTSEIVRVAMERKSR 249
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