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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918166
Clone id YMU001_000110_C11
Library
Length 527
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGTTTTCAGGGAATGATCTCTGAGGTTATTCCCCCTCTGTTGGTTCATATGCATCATGA
TCTTGATGCCGCTTGGTATCGCTTTGTTATGAGGGTGCAAAGTGTTATTTGTGACTATGG
CAAGCATTACATGCAGTGCACTCGAGGGGAAGTCAATTTGCGGCCTCTGTCTAATTCTGA
GATGTCGGAGCTATGTGAAGCCTCTGTGTGTATTCAGCGTAATGACAAGCGAAAGCTTGC
TAAATGGCAGACGTGTGCTCGTCAACAGGCTTTCACAGACAAAGGTTGTGCTTCAAAGCA
ATTTTTTAAGCATTTACATCATTCAAGAATCTCATGTGCAATCAAGCGCGTTATGCTTTC
CTCGAGTATTTGGACTTCCTCAAAGCAGGAACTTGCGGATGCCATGGTTTTGCATTATCG
ACAGGTGTTTGCTGCTCCTTCTCACACATCTTTGGCTGCTTGCCATGCGCATCAATTGAT
GCTTTCCTTTGTTACTCCGATTATATCCCCGCAAGATGCATGTGGTC
■■Homology search results ■■ -
sp_hit_id Q9JXL4
Definition sp|Q9JXL4|MNME_NEIMB tRNA modification GTPase mnmE OS=Neisseria meningitidis serogroup B
Align length 64
Score (bit) 32.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918166|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_C11.
         (527 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JXL4|MNME_NEIMB tRNA modification GTPase mnmE OS=Neisseria ...    32   1.9  
sp|Q9JWB7|MNME_NEIMA tRNA modification GTPase mnmE OS=Neisseria ...    32   1.9  
sp|Q5F529|MNME_NEIG1 tRNA modification GTPase mnmE OS=Neisseria ...    32   1.9  
sp|A1KW66|MNME_NEIMF tRNA modification GTPase mnmE OS=Neisseria ...    31   3.2  
sp|A9M0N5|MNME_NEIM0 tRNA modification GTPase mnmE OS=Neisseria ...    31   3.2  
sp|P20193|SUV37_DROME Protein suppressor of variegation 3-7 OS=D...    31   4.1  
sp|Q5RB89|NET4_PONAB Netrin-4 OS=Pongo abelii GN=NTN4 PE=2 SV=1        30   5.4  
sp|Q9JI33|NET4_MOUSE Netrin-4 OS=Mus musculus GN=Ntn4 PE=2 SV=1        30   5.4  
sp|Q9HB63|NET4_HUMAN Netrin-4 OS=Homo sapiens GN=NTN4 PE=2 SV=2        30   5.4  

>sp|Q9JXL4|MNME_NEIMB tRNA modification GTPase mnmE OS=Neisseria
           meningitidis serogroup B GN=mnmE PE=3 SV=1
          Length = 448

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 338 AIKRVMLSSSIWTSSKQELADAMVLHYRQVFAAPSHTSLAA-CHAHQLMLSFVTPIISPQ 514
           A+KR +L  + W    + L  A   H   + AA    SLAA C  HQ+ L F   +   Q
Sbjct: 363 ALKRTLLREAGWQGESEGLFLARTRHVNALKAAQEELSLAALCGNHQIEL-FAEHLRLAQ 421

Query: 515 DACG 526
            ACG
Sbjct: 422 VACG 425


>sp|Q9JWB7|MNME_NEIMA tRNA modification GTPase mnmE OS=Neisseria
           meningitidis serogroup A GN=mnmE PE=3 SV=1
          Length = 448

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 338 AIKRVMLSSSIWTSSKQELADAMVLHYRQVFAAPSHTSLAA-CHAHQLMLSFVTPIISPQ 514
           A+KR +L  + W    + L  A   H   + AA    SLAA C  HQ+ L F   +   Q
Sbjct: 363 ALKRTLLREAGWQGESEGLFLARTRHVNALKAAQEELSLAALCGNHQIEL-FAEHLRLAQ 421

Query: 515 DACG 526
            ACG
Sbjct: 422 VACG 425


>sp|Q5F529|MNME_NEIG1 tRNA modification GTPase mnmE OS=Neisseria
           gonorrhoeae (strain ATCC 700825 / FA 1090) GN=mnmE PE=3
           SV=1
          Length = 448

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 338 AIKRVMLSSSIWTSSKQELADAMVLHYRQVFAAPSHTSLAA-CHAHQLMLSFVTPIISPQ 514
           A+KR +L  + W    + L  A   H   + AA    SLAA C  HQ+ L F   +   Q
Sbjct: 363 ALKRTLLCEAGWQGESEGLFLARTRHVNALKAAQEELSLAALCGNHQIEL-FAEHLRLAQ 421

Query: 515 DACG 526
            ACG
Sbjct: 422 VACG 425


>sp|A1KW66|MNME_NEIMF tRNA modification GTPase mnmE OS=Neisseria
           meningitidis serogroup C / serotype 2a (strain ATCC
           700532 / FAM18) GN=mnmE PE=3 SV=1
          Length = 448

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 338 AIKRVMLSSSIWTSSKQELADAMVLHYRQVFAAPSHTSLAA-CHAHQLMLSFVTPIISPQ 514
           A+KR +L  + W    + L  A   H   + AA    SLAA C  HQ+ L F   +   Q
Sbjct: 363 ALKRTLLREAGWQGEGEGLFLARTRHVNALKAAQEELSLAALCGNHQIEL-FAEHLRLAQ 421

Query: 515 DACG 526
            ACG
Sbjct: 422 VACG 425


>sp|A9M0N5|MNME_NEIM0 tRNA modification GTPase mnmE OS=Neisseria
           meningitidis serogroup C (strain 053442) GN=mnmE PE=3
           SV=1
          Length = 448

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 338 AIKRVMLSSSIWTSSKQELADAMVLHYRQVFAAPSHTSLAA-CHAHQLMLSFVTPIISPQ 514
           A+KR +L  + W    + L  A   H   + AA    SLAA C  HQ+ L F   +   Q
Sbjct: 363 ALKRTLLREAGWQGEGEGLFLARTRHVNALKAAQEELSLAALCGNHQIEL-FAEHLRLAQ 421

Query: 515 DACG 526
            ACG
Sbjct: 422 VACG 425


>sp|P20193|SUV37_DROME Protein suppressor of variegation 3-7
           OS=Drosophila melanogaster GN=Su(var)3-7 PE=1 SV=4
          Length = 1250

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = -2

Query: 520 CILRGYNRSNKGKHQLMRMASSQRCVRRSSKHLSIMQNHGIRKFLL*GSPNTRGKHNALD 341
           C +R +N + K +H+L            S++H+ +++   +R+  L    NT+ KHNA D
Sbjct: 610 CRVRFHNEAAKARHEL------------SARHVKLVKQFKMRQAKLHQGTNTQTKHNAQD 657


>sp|Q5RB89|NET4_PONAB Netrin-4 OS=Pongo abelii GN=NTN4 PE=2 SV=1
          Length = 628

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 465 WQAAKDV*EGAANTCR*CKTMASASSCFEEVQILEESITR 346
           W+AA D   GA N CR CK    A +C  +V + E S  R
Sbjct: 316 WEAA-DGKTGAPNECRTCKCNGHADTCHFDVNVWEASGNR 354


>sp|Q9JI33|NET4_MOUSE Netrin-4 OS=Mus musculus GN=Ntn4 PE=2 SV=1
          Length = 628

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 465 WQAAKDV*EGAANTCR*CKTMASASSCFEEVQILEESITR 346
           W+AA D   GA N CR CK    A +C  +V + E S  R
Sbjct: 316 WEAA-DGRTGAPNECRTCKCNGHADTCHFDVNVWEASGNR 354


>sp|Q9HB63|NET4_HUMAN Netrin-4 OS=Homo sapiens GN=NTN4 PE=2 SV=2
          Length = 628

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 465 WQAAKDV*EGAANTCR*CKTMASASSCFEEVQILEESITR 346
           W+AA D   GA N CR CK    A +C  +V + E S  R
Sbjct: 316 WEAA-DGKTGAPNECRTCKCNGHADTCHFDVNVWEASGNR 354
tr_hit_id Q4S3B5
Definition tr|Q4S3B5|Q4S3B5_TETNG Chromosome 1 SCAF14751, whole genome shotgun sequence OS=Tetraodon nigroviridis
Align length 97
Score (bit) 35.0
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918166|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_C11.
         (527 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4S3B5|Q4S3B5_TETNG Chromosome 1 SCAF14751, whole genome shot...    35   2.3  

>tr|Q4S3B5|Q4S3B5_TETNG Chromosome 1 SCAF14751, whole genome shotgun
           sequence OS=Tetraodon nigroviridis GN=GSTENG00024720001
           PE=4 SV=1
          Length = 700

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 28/97 (28%), Positives = 41/97 (42%)
 Frame = +2

Query: 185 SELCEASVCIQRNDKRKLAKWQTCARQQAFTDKGCASKQFFKHLHHSRISCAIKRVMLSS 364
           S LC+   C+  N K+ L    T   + AF       ++  +H+     S +   V  SS
Sbjct: 499 SVLCDQ--CMSSNQKKALKAEHTSRLKAAFVKALQQEQEIDQHILQQAASSSSSSVSKSS 556

Query: 365 SIWTSSKQELADAMVLHYRQVFAAPSHTSLAACHAHQ 475
           S  TSS  +    +   Y+QV AA  H S+   H  Q
Sbjct: 557 SPATSSLSKSELLVSQQYKQVRAAMQHKSVQLSHGLQ 593