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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918184
Clone id YMU001_000110_E05
Library
Length 469
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAGAAGTTTGTAGGATCAGGCATTTCCATGGTACCAAACCTTGAATTTGGTCATCAGAAG
TTTAACTGCAAATCAGCAACAATGAGTCCTTTTACTGTTACCCTGATAAACAGTCAGGGC
CACACATTTCAAGCACCAGTTTGGTGGGCGTTCTAAAAAATGGCAGATGAACATGTCATC
ATTATATCACAAAGCTTCAAGCACCGACATCTCCCATTTGAAAAGCAATTGCAGACTCCA
TATAAGCATCTTCAAGGCATAGGAAGGACTCTGCAACACAACATACCAATGCTGAACTGC
TAAAGTTAATCTTCCAATGCTCTACGTTTGATACACAAACAAAATGGTTCTCCATCCATG
TCGATTGCAGGTAGATTCAAGACCTGTATCATTCCATTAGCTTGCCTATCATAGCCCTGT
CTGCACATGTTCATTCCATACAGAACAACATTTTCTGTATAATGCGCAT
■■Homology search results ■■ -
sp_hit_id Q62635
Definition sp|Q62635|MUC2_RAT Mucin-2 (Fragment) OS=Rattus norvegicus
Align length 29
Score (bit) 30.8
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918184|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_E05.
         (469 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q62635|MUC2_RAT Mucin-2 (Fragment) OS=Rattus norvegicus GN=Mu...    31   3.1  
sp|A4IR72|URK_GEOTN Uridine kinase OS=Geobacillus thermodenitrif...    31   3.1  
sp|Q5KWV3|URK_GEOKA Uridine kinase OS=Geobacillus kaustophilus G...    31   3.1  
sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2         30   4.0  
sp|P12850|GROA_MOUSE Growth-regulated alpha protein OS=Mus muscu...    30   4.0  
sp|Q7XJK6|AGL36_ARATH Agamous-like MADS-box protein AGL36 OS=Ara...    30   5.2  
sp|A2A6H3|FBX47_MOUSE F-box only protein 47 OS=Mus musculus GN=F...    30   5.3  
sp|P09341|GROA_HUMAN Growth-regulated alpha protein OS=Homo sapi...    30   6.8  
sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1     29   8.9  
sp|O61363|HCYG_OCTDO Hemocyanin G-type, units Oda to Odg OS=Octo...    29   9.1  
sp|P12659|HCYA_OCTDO Hemocyanin A-type, units Ode to Odg (Fragme...    29   9.1  

>sp|Q62635|MUC2_RAT Mucin-2 (Fragment) OS=Rattus norvegicus GN=Muc2
           PE=1 SV=1
          Length = 1513

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 251 RCLYGVCNCFSNGRCRCLKLCDIMMTCSS 165
           RC Y  CNC +N  C C  L      C++
Sbjct: 610 RCKYDTCNCQNNEDCMCAALSSYARACAA 638


>sp|A4IR72|URK_GEOTN Uridine kinase OS=Geobacillus
           thermodenitrificans (strain NG80-2) GN=udk PE=3 SV=1
          Length = 211

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = +1

Query: 166 DEHVIIISQSFKHR---HLPFEKQLQTPYKH 249
           D  ++++ Q F ++   HLPFE++L+T Y H
Sbjct: 31  DRSILVLEQDFYYKDQSHLPFEERLKTNYDH 61


>sp|Q5KWV3|URK_GEOKA Uridine kinase OS=Geobacillus kaustophilus
           GN=udk PE=3 SV=1
          Length = 211

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = +1

Query: 166 DEHVIIISQSFKHR---HLPFEKQLQTPYKH 249
           D  ++++ Q F ++   HLPFE++L+T Y H
Sbjct: 31  DRSILVLEQDFYYKDQSHLPFEERLKTNYDH 61


>sp|Q02817|MUC2_HUMAN Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2
          Length = 5179

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 251 RCLYGVCNCFSNGRCRCLKLCDIMMTCSS 165
           RC Y  CNC +N  C C  L      C++
Sbjct: 613 RCKYDTCNCQNNEDCLCAALSSYARACTA 641


>sp|P12850|GROA_MOUSE Growth-regulated alpha protein OS=Mus musculus
           GN=Cxcl1 PE=1 SV=1
          Length = 96

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 66  LQISNNESFYCYPDKQSGPHISSTSLVGVLKNGR*TC 176
           + + N +S    P   SGPH + T ++  LKNGR  C
Sbjct: 42  IHLKNIQSLKVLP---SGPHCTQTEVIATLKNGREAC 75


>sp|Q7XJK6|AGL36_ARATH Agamous-like MADS-box protein AGL36
           OS=Arabidopsis thaliana GN=AGL36 PE=1 SV=1
          Length = 366

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +3

Query: 264 KDSATQHTNAELLKLIFQCSTFDTQTKWFSIHVDCR*IQDLYHSISLPIIALSAHVHSIQ 443
           K+ A ++   ++ + +F C     + K    H D + +QDL   I+L +  L+  + SI+
Sbjct: 100 KNLAAENRELQVRRFMFDC----VEGKMSQYHYDAKDLQDLQSCINLYLDQLNGRIESIK 155

Query: 444 NN 449
            N
Sbjct: 156 EN 157


>sp|A2A6H3|FBX47_MOUSE F-box only protein 47 OS=Mus musculus
           GN=Fbxo47 PE=3 SV=2
          Length = 451

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 22/85 (25%), Positives = 36/85 (42%)
 Frame = +1

Query: 181 IISQSFKHRHLPFEKQLQTPYKHLQGIGRTLQHNIPMLNC*S*SSNALRLIHKQNGSPSM 360
           ++ Q+F    LP  K+     +H + +G   +    +L     +   L+ IHK     S 
Sbjct: 91  LLLQNFHDLDLPGTKEETALLEHYRALGLLFKRCTLLLP----TKERLKYIHKILSEVSC 146

Query: 361 SIAGRFKTCIIPLACLS*PCLHMFI 435
               +F  C +PL CL   C  MF+
Sbjct: 147 F---KFSGCSVPLQCLGLSCYGMFL 168


>sp|P09341|GROA_HUMAN Growth-regulated alpha protein OS=Homo sapiens
           GN=CXCL1 PE=1 SV=1
          Length = 107

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 108 KQSGPHISSTSLVGVLKNGR*TC 176
           K  GPH + T ++  LKNGR  C
Sbjct: 63  KSPGPHCAQTEVIATLKNGRKAC 85


>sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1
          Length = 5147

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 248  CLYGVCNCFSNGRCRCL 198
            CLY  C C S G C CL
Sbjct: 1229 CLYDACGCDSGGDCECL 1245


>sp|O61363|HCYG_OCTDO Hemocyanin G-type, units Oda to Odg OS=Octopus
            dofleini GN=ODHCY PE=1 SV=1
          Length = 2896

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
 Frame = +1

Query: 49   GHQKFNCKSATMSPFTVTLINSQGHTFQAPVWWAF*KMADEHVIIISQSFKHRHLPFEK- 225
            GHQK+   S   S F              P+++    M D    I     +HRHLPF+K 
Sbjct: 2271 GHQKYAMSSLVYSSFD-------------PIFYVHHSMVDRLWAIWQALQEHRHLPFDKA 2317

Query: 226  -----QLQTPYK 246
                 QL  P K
Sbjct: 2318 YCALEQLSFPMK 2329
tr_hit_id Q4QK22
Definition tr|Q4QK22|Q4QK22_HAEI8 Putative uncharacterized protein OS=Haemophilus influenzae (strain 86-028NP)
Align length 86
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918184|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_E05.
         (469 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4QK22|Q4QK22_HAEI8 Putative uncharacterized protein OS=Haemo...    33   5.5  
tr|A4P0H6|A4P0H6_HAEIN Putative uncharacterized protein OS=Haemo...    33   5.5  
tr|A4NUH7|A4NUH7_HAEIN Putative uncharacterized protein OS=Haemo...    33   5.5  
tr|A4N467|A4N467_HAEIN Putative uncharacterized protein OS=Haemo...    33   5.5  
tr|B6MMH4|B6MMH4_BRAFL Putative uncharacterized protein OS=Branc...    33   5.5  
tr|A4NKW6|A4NKW6_HAEIN Putative uncharacterized protein OS=Haemo...    33   7.1  
tr|A9RXL5|A9RXL5_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.1  
tr|B4HL31|B4HL31_DROSE GM26325 OS=Drosophila sechellia GN=GM2632...    33   7.1  

>tr|Q4QK22|Q4QK22_HAEI8 Putative uncharacterized protein
           OS=Haemophilus influenzae (strain 86-028NP) GN=NTHI1863
           PE=4 SV=1
          Length = 142

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
 Frame = +1

Query: 7   FVGSGISMVPNLEFGHQK----FNC----KSATMSPFTVTLINSQGHTFQAPVWWAF*KM 162
           ++   ++ +PN E   Q     ++C    K +   P +   IN  G T    + +   K+
Sbjct: 54  WLDDNLNDIPNTEVYQQNEIWHYHCGPYNKGSRYCPMSGLKINLNGETSGPVIHYQ--KI 111

Query: 163 ADEHVIIISQSFKHRHLPFEKQLQTP 240
           +DEH++II  +F  +H PF ++  TP
Sbjct: 112 SDEHIVII--AFSPQHEPFPREWDTP 135


>tr|A4P0H6|A4P0H6_HAEIN Putative uncharacterized protein
           OS=Haemophilus influenzae 22.4-21 GN=CGSHiR3021_00367
           PE=4 SV=1
          Length = 118

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
 Frame = +1

Query: 7   FVGSGISMVPNLEFGHQK----FNC----KSATMSPFTVTLINSQGHTFQAPVWWAF*KM 162
           ++   ++ +PN E   Q     ++C    K +   P +   IN  G T    + +   K+
Sbjct: 30  WLDDNLNDIPNTEVYQQNEIWHYHCGPYNKGSRYCPMSGLKINLNGETSGPVIHYQ--KI 87

Query: 163 ADEHVIIISQSFKHRHLPFEKQLQTP 240
           +DEH++II  +F  +H PF ++  TP
Sbjct: 88  SDEHIVII--AFSPQHEPFPREWDTP 111


>tr|A4NUH7|A4NUH7_HAEIN Putative uncharacterized protein
           OS=Haemophilus influenzae PittII GN=CGSHiII_07068 PE=4
           SV=1
          Length = 142

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
 Frame = +1

Query: 7   FVGSGISMVPNLEFGHQK----FNC----KSATMSPFTVTLINSQGHTFQAPVWWAF*KM 162
           ++   ++ +PN E   Q     ++C    K +   P +   IN  G T    + +   K+
Sbjct: 54  WLDDNLNDIPNTEVYQQNEIWHYHCGPYNKGSRYCPMSGLKINLNGETSGPVIHYQ--KI 111

Query: 163 ADEHVIIISQSFKHRHLPFEKQLQTP 240
           +DEH++II  +F  +H PF ++  TP
Sbjct: 112 SDEHIVII--AFSPQHEPFPREWDTP 135


>tr|A4N467|A4N467_HAEIN Putative uncharacterized protein
           OS=Haemophilus influenzae R3021 GN=CGSHi22421_02991 PE=4
           SV=1
          Length = 142

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
 Frame = +1

Query: 7   FVGSGISMVPNLEFGHQK----FNC----KSATMSPFTVTLINSQGHTFQAPVWWAF*KM 162
           ++   ++ +PN E   Q     ++C    K +   P +   IN  G T    + +   K+
Sbjct: 54  WLDDNLNDIPNTEVYQQNEIWHYHCGPYNKGSRYCPMSGLKINLNGETSGPVIHYQ--KI 111

Query: 163 ADEHVIIISQSFKHRHLPFEKQLQTP 240
           +DEH++II  +F  +H PF ++  TP
Sbjct: 112 SDEHIVII--AFSPQHEPFPREWDTP 135


>tr|B6MMH4|B6MMH4_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_84281 PE=4 SV=1
          Length = 1146

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 376 IYLQSTWMENHFVCVSNVEHWKINFSSSA 290
           I L  TW EN   C +N+E W++ FS+ A
Sbjct: 78  ISLAGTWHENAPTCTANIEKWRVVFSAQA 106


>tr|A4NKW6|A4NKW6_HAEIN Putative uncharacterized protein
           OS=Haemophilus influenzae PittHH GN=CGSHiHH_01107 PE=4
           SV=1
          Length = 142

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
 Frame = +1

Query: 7   FVGSGISMVPNLEFGHQK----FNC----KSATMSPFTVTLINSQGHTFQAPVWWAF*KM 162
           ++   ++ +PN E   Q     ++C    K +   P +   IN  G T    + +   K+
Sbjct: 54  WLDDNLNDIPNTEVYQQNEIWHYHCGPYNKGSRYCPMSGLKINLNGETSGPVIHYQ--KI 111

Query: 163 ADEHVIIISQSFKHRHLPFEKQLQTP 240
           +DEH++II  +F  +H PF ++  TP
Sbjct: 112 SDEHIVII--AFSPQHEPFPRKWDTP 135


>tr|A9RXL5|A9RXL5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_206630 PE=4 SV=1
          Length = 955

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -1

Query: 367 QSTWMENHFVCVSNVEHWKINFSSSALVCCVAESFLCLEDAYMESAIAFQ 218
           QS W E+H  C S V HW +N    A V  VAE    L +  +  + A Q
Sbjct: 736 QSKW-ESHLQCNSKVVHWDLNRPIKAAVAAVAEHLAGLVETQLTYSHAHQ 784


>tr|B4HL31|B4HL31_DROSE GM26325 OS=Drosophila sechellia GN=GM26325
           PE=4 SV=1
          Length = 267

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/64 (34%), Positives = 31/64 (48%)
 Frame = +1

Query: 106 INSQGHTFQAPVWWAF*KMADEHVIIISQSFKHRHLPFEKQLQTPYKHLQGIGRTLQHNI 285
           INS+   F+     AF K  DE   I+ ++  HR   FEKQ+    K +QG   +L+  I
Sbjct: 204 INSEEQQFKKNALAAF-KKYDEDRAILDKALAHRIAEFEKQIPNEKKSVQGRSYSLEKRI 262

Query: 286 PMLN 297
              N
Sbjct: 263 GTRN 266