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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918188
Clone id YMU001_000110_E09
Library
Length 493
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGTCTCATCCCAATGCAAAAAATCTATGCAAAGGCATGATTTGCCGAAGCAAATCATGT
TGATTACAGCGGGGATCAATATGAAAATTGCAAGAGTTACAAAGTGATAAGATCGATAGC
ATAGTTCCATCTATCCCCCAGTCCTCCTCGACCTTCAATTTGTCTTCCATTCTCTCCCCA
ATCTGCGGACATTCATTGACAATAAGCATCTAATGATCGACAAACCATGATGTATTGAAA
ATGTGGTGGAAGGATTCTCACCTTGTGACCTTGTAAACGAAATTGTGCTTGTTGAAGGGC
CTCAAAACCCATAATAACCAAATGTTCTCGAACATTACTGAGAGTCCAATGCTTGTTCAC
TTGGACTGCCTCCAAAGCATCGTTGGGCATCTTCACTGCAATGTCAAAACTTGCAATAGC
GCCGTCTACACTCTGTAAGGGAGTCCACACTCCAAGCTTGCACATCCAACGATCATAGTG
AAATCGTATGTAC
■■Homology search results ■■ -
sp_hit_id P42452
Definition sp|P42452|HEM4_SYNE7 Uroporphyrinogen-III synthase OS=Synechococcus elongatus (strain PCC 7942)
Align length 75
Score (bit) 33.1
E-value 0.71
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918188|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_E09.
         (493 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P42452|HEM4_SYNE7 Uroporphyrinogen-III synthase OS=Synechococ...    33   0.71 
sp|B4MPK3|KTU_DROWI Protein kintoun OS=Drosophila willistoni GN=...    31   3.5  
sp|P29022|CHIA_MAIZE Endochitinase A OS=Zea mays PE=1 SV=1             31   3.5  
sp|P29023|CHIB_MAIZE Endochitinase B (Fragment) OS=Zea mays PE=1...    30   4.6  
sp|Q6MC93|DNAA1_PARUW Chromosomal replication initiator protein ...    30   5.9  

>sp|P42452|HEM4_SYNE7 Uroporphyrinogen-III synthase OS=Synechococcus
           elongatus (strain PCC 7942) GN=hemD PE=4 SV=1
          Length = 264

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = -2

Query: 447 WTPLQSVDGAIASFDIAVKMPNDALEAVQ-----VNKHWTLSNVREHLVIMGFEALQQAQ 283
           W PL     AIA FD  +    +A+EAVQ       K W  S+V   + ++G +  Q   
Sbjct: 48  WLPLDEAIAAIADFDWLILASANAVEAVQQRLAAQQKSW--SDVPCAIAVVGQKTAQ--V 103

Query: 282 FRLQGHKVRILPPHF 238
              QG K   +PP F
Sbjct: 104 LAAQGGKADYIPPEF 118


>sp|B4MPK3|KTU_DROWI Protein kintoun OS=Drosophila willistoni
           GN=Ppi20 PE=3 SV=1
          Length = 1204

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 451 SVDSLTECRRRYCKF*HCSEDAQRCFGGSPSEQALDSQ*CSRT 323
           S  S+ +C   Y     CS +A R FGG P E +  S+ C +T
Sbjct: 680 SCSSIDDCSSSY----PCSVEASRSFGGIPEEDSSLSESCKKT 718


>sp|P29022|CHIA_MAIZE Endochitinase A OS=Zea mays PE=1 SV=1
          Length = 280

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 243 HFQYIMVCRSLDAYCQ*MSADWG-ENGRQIEGRGGLGDRWNY 121
           HF YI      +AYC   +  W    G++  GRG L   WNY
Sbjct: 147 HFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNY 188


>sp|P29023|CHIB_MAIZE Endochitinase B (Fragment) OS=Zea mays PE=1
           SV=1
          Length = 269

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -2

Query: 243 HFQYIMVCRSLDAYCQ*MSADWG-ENGRQIEGRGGLGDRWNY 121
           HF YI      +AYC      W    G++  GRG L   WNY
Sbjct: 136 HFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNY 177


>sp|Q6MC93|DNAA1_PARUW Chromosomal replication initiator protein
           dnaA 1 OS=Protochlamydia amoebophila (strain UWE25)
           GN=dnaA1 PE=3 SV=1
          Length = 451

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 287 HNFVYKVTR*ESFHHIFNTSWFVDH*MLIVNEC-PQIGERMEDKLKVEEDWGI 132
           H F  K    E F H FNT       +++ +EC PQ  + +E +L    +WGI
Sbjct: 217 HVFSRKGATQEEFFHTFNTLHLEGKQIILASECSPQDLQLIEPRLVSRFEWGI 269
tr_hit_id A2DAQ3
Definition tr|A2DAQ3|A2DAQ3_TRIVA Putative uncharacterized protein OS=Trichomonas vaginalis G3
Align length 38
Score (bit) 33.5
E-value 5.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918188|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_E09.
         (493 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2DAQ3|A2DAQ3_TRIVA Putative uncharacterized protein OS=Trich...    33   5.6  
tr|Q5N2N9|Q5N2N9_SYNP6 Porphyrin biosynthesis protein HemD OS=Sy...    33   7.3  
tr|Q83N32|Q83N32_TROWT Putative sporulation regulatory protein O...    33   9.3  
tr|Q7PX63|Q7PX63_ANOGA AGAP001232-PA OS=Anopheles gambiae GN=AGA...    33   9.5  

>tr|A2DAQ3|A2DAQ3_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_035800 PE=4 SV=1
          Length = 1521

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -1

Query: 130 MELCYRSYHFVTLAIFILIPAVINMICFGKSCLCIDFL 17
           MEL  RSY+FV+L    +    I  +CFGK    I+FL
Sbjct: 1   MELSPRSYYFVSLNENAISCEAIRQLCFGKILFAIEFL 38


>tr|Q5N2N9|Q5N2N9_SYNP6 Porphyrin biosynthesis protein HemD
           OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
           SAUG 1402/1) GN=hemD PE=4 SV=1
          Length = 264

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = -2

Query: 447 WTPLQSVDGAIASFDIAVKMPNDALEAVQ-----VNKHWTLSNVREHLVIMGFEALQQAQ 283
           W PL     AIA FD  +    +A+EAVQ       K W  S+V   + ++G +  Q   
Sbjct: 48  WLPLDEAIAAIADFDWLILASANAVEAVQQRLAAQQKSW--SDVPCAIAVVGQKTAQ--V 103

Query: 282 FRLQGHKVRILPPHF 238
              QG K   +PP F
Sbjct: 104 LAAQGGKADYIPPEF 118


>tr|Q83N32|Q83N32_TROWT Putative sporulation regulatory protein
           OS=Tropheryma whipplei (strain Twist) GN=whiB PE=4 SV=1
          Length = 115

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 185 QIGERMEDKLKVEEDWGIDGTMLSILSLCNSCNFHIDPRCNQHD 54
           QIG R+ D L + +DW ID  +L I  L    ++     C Q D
Sbjct: 9   QIGVRVSDNLPIPDDWHIDPVLLGIPGLRGGFDWRARALCAQAD 52


>tr|Q7PX63|Q7PX63_ANOGA AGAP001232-PA OS=Anopheles gambiae
           GN=AGAP001232 PE=4 SV=2
          Length = 413

 Score = 32.7 bits (73), Expect = 9.5
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -2

Query: 420 AIASFDIAVKMPNDALEAVQVNKHWTLSNVREHLVIMGFEALQQAQFRLQGHKVRIL 250
           AI   D  VK+PNDA   + +N++    N+   L +  F+ALQ      + HKV ++
Sbjct: 200 AIEESDQVVKLPNDAFVFLSINRYERKKNLA--LALHAFKALQDMVSSSEWHKVCLI 254