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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918193
Clone id YMU001_000110_F03
Library
Length 430
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCGTGGAGGAGTGGAAGTTTCTTGCCCTCGCGGAACCATGGTAAAAGTTGGTAAGCAGGT
CTACTTTGTTTTTCTTCTAGCTTGTAAGTGTAGGTGTGAATGAAGTTTATGTGTCTTTCA
TTTGATTTCGTCGGTTTCTTATGTGTTGCTATCTTCTCCTTTGTTCTTGCCTTCTTTTTT
TCCTTGTGTTTAGCACATTGTGTATATTTGGGTTTACGTTTGCTGGCTTGCCACTCTGTT
CTCGGCTCGTGCTATTAGGTTGCTACATCAGGTTTTCAAAGCTGTTGCCCCCCGAGTCTC
CTTCATTGTCTTTTCGTGGAGTTCCCTCCTAGCTGGCTTTCAGTAGCCACCTTCAGCAAG
TGGATAGGTTTCTACCCTGGGTAATAGCTCCTTGTTAGCTCTAATGCAGTGATGTGTTAC
GCATCTTATG
■■Homology search results ■■ -
sp_hit_id Q7MQ07
Definition sp|Q7MQ07|RBN_VIBVY tRNA-processing ribonuclease BN OS=Vibrio vulnificus (strain YJ016)
Align length 23
Score (bit) 30.0
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918193|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_F03.
         (430 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7MQ07|RBN_VIBVY tRNA-processing ribonuclease BN OS=Vibrio vu...    30   4.2  
sp|Q8DDS2|RBN_VIBVU tRNA-processing ribonuclease BN OS=Vibrio vu...    30   4.2  
sp|A7MTU7|RBN_VIBHB tRNA-processing ribonuclease BN OS=Vibrio ha...    30   4.2  
sp|Q9BX79|STRA6_HUMAN Stimulated by retinoic acid gene 6 protein...    30   5.5  
sp|Q9KNJ6|RBN_VIBCH tRNA-processing ribonuclease BN OS=Vibrio ch...    30   5.5  
sp|A5F4Q8|RBN_VIBC3 tRNA-processing ribonuclease BN OS=Vibrio ch...    30   5.5  
sp|Q3T083|SDF2L_BOVIN Stromal cell-derived factor 2-like protein...    29   7.1  
sp|Q87TE5|RBN_VIBPA tRNA-processing ribonuclease BN OS=Vibrio pa...    29   7.1  
sp|Q5E8Q1|RBN_VIBF1 tRNA-processing ribonuclease BN OS=Vibrio fi...    29   9.3  

>sp|Q7MQ07|RBN_VIBVY tRNA-processing ribonuclease BN OS=Vibrio
           vulnificus (strain YJ016) GN=rbn PE=3 SV=1
          Length = 313

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 197 IVYIWVYVCWLATLFSARAIRLL 265
           I+++WVY+CWL  L  A     L
Sbjct: 255 ILFVWVYLCWLIVLIGAEVTAAL 277


>sp|Q8DDS2|RBN_VIBVU tRNA-processing ribonuclease BN OS=Vibrio
           vulnificus GN=rbn PE=3 SV=1
          Length = 313

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 197 IVYIWVYVCWLATLFSARAIRLL 265
           I+++WVY+CWL  L  A     L
Sbjct: 255 ILFVWVYLCWLIVLIGAEVTAAL 277


>sp|A7MTU7|RBN_VIBHB tRNA-processing ribonuclease BN OS=Vibrio
           harveyi (strain ATCC BAA-1116 / BB120) GN=rbn PE=3 SV=1
          Length = 314

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 197 IVYIWVYVCWLATLFSARAIRLL 265
           I+++WVY+CWL  L  A     L
Sbjct: 255 ILFVWVYLCWLIVLIGAEVTAAL 277


>sp|Q9BX79|STRA6_HUMAN Stimulated by retinoic acid gene 6 protein
           homolog OS=Homo sapiens GN=STRA6 PE=1 SV=1
          Length = 667

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 214 LRLLACHSVLGSCY*VATSGFQSCCPPSLLHCLFVEFP 327
           LR L C   LGS Y  +  GF S     L HC++   P
Sbjct: 251 LRNLLCRKKLGSSYHTSKHGFLSWARVCLRHCIYTPQP 288


>sp|Q9KNJ6|RBN_VIBCH tRNA-processing ribonuclease BN OS=Vibrio
           cholerae GN=rbn PE=3 SV=1
          Length = 297

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 197 IVYIWVYVCWLATLFSARAIRLL 265
           I+++WVY+CWL  L  A     L
Sbjct: 251 ILFVWVYLCWLIVLVGAEVTAAL 273


>sp|A5F4Q8|RBN_VIBC3 tRNA-processing ribonuclease BN OS=Vibrio
           cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 /
           O395) GN=rbn PE=3 SV=1
          Length = 297

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 197 IVYIWVYVCWLATLFSARAIRLL 265
           I+++WVY+CWL  L  A     L
Sbjct: 251 ILFVWVYLCWLIVLVGAEVTAAL 273


>sp|Q3T083|SDF2L_BOVIN Stromal cell-derived factor 2-like protein 1
           OS=Bos taurus GN=SDF2L1 PE=2 SV=1
          Length = 221

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 2   RGGVEVSCPRGTMVKVGKQVYFVFLLACK 88
           RGG E  CPRG+ V+ G+ V    +L  K
Sbjct: 85  RGGTEGECPRGSPVRCGQAVRLTHVLTGK 113


>sp|Q87TE5|RBN_VIBPA tRNA-processing ribonuclease BN OS=Vibrio
           parahaemolyticus GN=rbn PE=3 SV=1
          Length = 314

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 197 IVYIWVYVCWLATLFSARAIRLL 265
           I+++WVY+CW+  L  A     L
Sbjct: 255 ILFVWVYLCWMIVLLGAEVTAAL 277


>sp|Q5E8Q1|RBN_VIBF1 tRNA-processing ribonuclease BN OS=Vibrio
           fischeri (strain ATCC 700601 / ES114) GN=rbn PE=3 SV=1
          Length = 310

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 197 IVYIWVYVCWLATLFSA 247
           I+++WVY+CW+  L  A
Sbjct: 248 ILFVWVYLCWIIVLIGA 264
tr_hit_id A3WH47
Definition tr|A3WH47|A3WH47_9SPHN Putative uncharacterized protein OS=Erythrobacter sp. NAP1
Align length 89
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918193|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_F03.
         (430 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3WH47|A3WH47_9SPHN Putative uncharacterized protein OS=Eryth...    35   2.5  
tr|B7QJN5|B7QJN5_IXOSC Bkm protein, putative (Fragment) OS=Ixode...    33   5.5  
tr|Q486K6|Q486K6_COLP3 Putative C4-dicarboxylate transporter fam...    33   7.1  
tr|B3DYP1|B3DYP1_METI4 Permease of the major facilitator superfa...    33   7.1  
tr|B6G0U9|B6G0U9_9CLOT Putative uncharacterized protein OS=Clost...    33   7.1  
tr|B7C4S0|B7C4S0_9FIRM Putative uncharacterized protein OS=Roseb...    33   9.3  
tr|B7AUZ4|B7AUZ4_9BACE Putative uncharacterized protein OS=Bacte...    33   9.3  

>tr|A3WH47|A3WH47_9SPHN Putative uncharacterized protein
           OS=Erythrobacter sp. NAP1 GN=NAP1_14258 PE=4 SV=1
          Length = 355

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
 Frame = +1

Query: 127 FVGF-LCVAIFSFVLAFFFSLCLAHCVYLGLRLLACHSVLGSCY*VATS---GFQSCCPP 294
           F+G  LC+A   F   FF  LCL+ C+ L LR  AC   LG  +  A     GF  C   
Sbjct: 133 FLGLGLCLASGLF-FCFFLGLCLSFCLGLRLRFFAC-LTLGFFFRFAFGFLFGFALCLGL 190

Query: 295 SLLHCLFVEFPPSWLSVATFSKWIGFYPG 381
            L   LF+ F  S+L+   F     F  G
Sbjct: 191 GLFFRLFLGFGLSFLASLFFGLLARFLLG 219


>tr|B7QJN5|B7QJN5_IXOSC Bkm protein, putative (Fragment) OS=Ixodes
           scapularis GN=IscW_ISCW023001 PE=4 SV=1
          Length = 105

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = +1

Query: 139 LCVAIFSFVLAFFFSLCLA--HCVYLGLRLLACHSVLGSCY-*VATSGFQSCCPPSLLHC 309
           +C++I+   L+ + S CL+    VYL + L    S+  S Y  V  S + S CPPS    
Sbjct: 8   ICLSIYQIYLSIYLSTCLSVYLSVYLSIYLSIYLSIYLSVYLSVYLSIYLSICPPS---- 63

Query: 310 LFVEFPPSWLSV 345
            FV F  ++LS+
Sbjct: 64  FFVFFSTAFLSI 75


>tr|Q486K6|Q486K6_COLP3 Putative C4-dicarboxylate transporter family
           protein, DctM subunit OS=Colwellia psychrerythraea
           (strain 34H / ATCC BAA-681) GN=CPS_1266 PE=4 SV=1
          Length = 462

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/49 (40%), Positives = 28/49 (57%)
 Frame = +2

Query: 257 RLLHQVFKAVAPRVSFIVFSWSSLLAGFQ*PPSASG*VSTLGNSSLLAL 403
           ++L +VFKA+ P +  I+    S+ AG   P  ASG V  LG + L AL
Sbjct: 230 KVLVEVFKAILPTLVLIIAVLGSIFAGIATPTEASG-VGALGATILAAL 277


>tr|B3DYP1|B3DYP1_METI4 Permease of the major facilitator
           superfamily OS=Methylacidiphilum infernorum (isolate V4)
           GN=Minf_2035 PE=4 SV=1
          Length = 431

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
 Frame = +1

Query: 127 FVGFLCVAIFS--FVLAFFFSLCLAHCVYLGL-------RLLACHSVLGSCY*VATSGFQ 279
           FVG L   +    F+L FFFSLC+A    LG        + L C+SV    +    + F 
Sbjct: 78  FVGALSDVVTKRKFILGFFFSLCIAATTLLGTTKEGDVWKSLLCYSVANISFSFTENIFS 137

Query: 280 SCCPPSLLHCLFVEFPPSWL----SVATFSKWIGFYP 378
           S   P ++   F+     W     ++  F   +G YP
Sbjct: 138 SFL-PEIIPMAFIGRFSGWTRAFGNLGGFLSLLGVYP 173


>tr|B6G0U9|B6G0U9_9CLOT Putative uncharacterized protein
            OS=Clostridium hiranonis DSM 13275 GN=CLOHIR_01755 PE=4
            SV=1
          Length = 2320

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -1

Query: 319  PRKDNEGDSGGNSFENLM*QPNSTSREQSGKPANVNP 209
            P K N GDS GNS      +PNS  +  S K  N  P
Sbjct: 2250 PEKPNSGDSSGNSSGTTTNRPNSNDKTNSSKNDNKTP 2286


>tr|B7C4S0|B7C4S0_9FIRM Putative uncharacterized protein
           OS=Roseburia intestinalis L1-82 GN=ROSINTL182_04024 PE=4
           SV=1
          Length = 193

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +2

Query: 203 YIWVYVCWLATLFSARAIRLLHQVFKAVAPRVSFIVF 313
           Y++V++CW+    +  +I ++  +F  + P + F+VF
Sbjct: 27  YVYVFICWIEKFITVGSIIVISLMFHKLLPTIFFLVF 63


>tr|B7AUZ4|B7AUZ4_9BACE Putative uncharacterized protein
           OS=Bacteroides pectinophilus ATCC 43243 GN=BACPEC_02542
           PE=4 SV=1
          Length = 193

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +2

Query: 203 YIWVYVCWLATLFSARAIRLLHQVFKAVAPRVSFIVF 313
           Y++V++CW+    +  +I ++  +F  + P + F+VF
Sbjct: 27  YVYVFICWIEKFITVGSIIVISLMFHKLLPTIFFLVF 63