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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918201
Clone id YMU001_000110_F12
Library
Length 440
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_F12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGGGAGTAGTCGTAGACTGGCGAGGACGTGGTTCGAGTGCGAGTGCGTATGCGCCCACC
GTTACTCTTGGAGCTGCCTATGATTTCGTCTGATCCAGCACTTCCAGTCCTGGAAAGCAA
GCCTCTGGAGGGGAACATGTAAGGGAGCACCACTATTAACCCAGCACTCAAGAGGAGAAG
GTATACAAGATAACTGGATGTGGGGGCCTGCTGCTTGCTCAAGGGGTCACCTTCTCCATT
CACATCTCTGAACATGTTTTGACCATTAAGTAAGAGGTCCCCTTAATGAAAAGGGCTGGC
AATGGACGGAAAGCCTTTCCTCAATTGCATTCAGTCGAACAATCTGTTCATGTATACGGA
GGGGCACCCCACTTTGGACAATCCGGCAACAGATAAGAATAGCCAATGCGGACAATGGAT
GCTTTGCATTGTGAGAAATT
■■Homology search results ■■ -
sp_hit_id Q9D5S7
Definition sp|Q9D5S7|LRGUK_MOUSE Leucine-rich repeat and guanylate kinase domain-containing protein OS=Mus musculus
Align length 27
Score (bit) 33.5
E-value 0.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918201|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_F12.
         (440 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9D5S7|LRGUK_MOUSE Leucine-rich repeat and guanylate kinase d...    33   0.40 
sp|P97469|SNAI2_MOUSE Zinc finger protein SNAI2 OS=Mus musculus ...    30   4.4  
sp|A6TAC7|MHPC_KLEP7 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-...    30   4.4  
sp|Q476M7|MHPC_RALEJ 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-...    30   5.7  
sp|Q6TAC4|V2R26_MOUSE Vomeronasal type-2 receptor 26 OS=Mus musc...    29   7.5  
sp|Q9WLS3|RDRP_I97A1 RNA-directed RNA polymerase catalytic subun...    29   7.5  
sp|O89749|RDRP_I97A0 RNA-directed RNA polymerase catalytic subun...    29   7.5  
sp|P77044|MHPC_ECOLI 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-...    29   7.5  
sp|A7ZWZ6|MHPC_ECOHS 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-...    29   7.5  
sp|Q8X5K0|MHPC_ECO57 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-...    29   7.5  
sp|A7ZI96|MHPC_ECO24 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-...    29   7.5  
sp|Q8WHJ9|MATK_WOLAR Maturase K OS=Wolffia arrhiza GN=matK PE=3 ...    29   9.8  
sp|P19515|LIP_RHIMI Lipase OS=Rhizomucor miehei PE=1 SV=2              29   9.8  

>sp|Q9D5S7|LRGUK_MOUSE Leucine-rich repeat and guanylate kinase
           domain-containing protein OS=Mus musculus GN=Lrguk PE=2
           SV=1
          Length = 820

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -3

Query: 144 PYMFPSRGLLSRTGSAGSDEIIGSSKS 64
           P+  P  G+ SR GSAGSDE+ G+ K+
Sbjct: 753 PFQLPEGGISSRPGSAGSDEVDGALKA 779


>sp|P97469|SNAI2_MOUSE Zinc finger protein SNAI2 OS=Mus musculus
           GN=Snai2 PE=2 SV=1
          Length = 269

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 226 PLEQAAGPHIQLSCIPSPLECWVNSGAPLHVPL 128
           P+     P I  S   SP+  W +S APLH PL
Sbjct: 38  PIPVIPKPEILTSGAYSPITVWTSSAAPLHSPL 70


>sp|A6TAC7|MHPC_KLEP7
           2-hydroxy-6-oxononadienedioate/2-hydroxy-6-
           oxononatrienedioate hydrolase OS=Klebsiella pneumoniae
           subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
           GN=mhpC PE=3 SV=1
          Length = 288

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 440 NFSQCKASIVRIGYSYLLPDCPKWG 366
           NFS+    +V  GY  LL DCP WG
Sbjct: 53  NFSRNIDPLVEAGYRVLLLDCPGWG 77


>sp|Q476M7|MHPC_RALEJ
           2-hydroxy-6-oxononadienedioate/2-hydroxy-6-
           oxononatrienedioate hydrolase OS=Ralstonia eutropha
           (strain JMP134) GN=mhpC PE=3 SV=1
          Length = 289

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 440 NFSQCKASIVRIGYSYLLPDCPKWG 366
           NF++    +V  GY  LL DCP WG
Sbjct: 55  NFNRNVEPLVAAGYRVLLVDCPGWG 79


>sp|Q6TAC4|V2R26_MOUSE Vomeronasal type-2 receptor 26 OS=Mus
           musculus GN=Vmn2r26 PE=2 SV=2
          Length = 855

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -3

Query: 411 PHWLFLSVAGLSKVGCPSVYMNRLFD*MQLRKGFPSIASPFH*GDL 274
           PH +F+     S  GCP  Y +RL+D  Q          P H  D+
Sbjct: 352 PHDIFIRHVWSSLFGCPHYYQHRLWDLSQCEPNGSLSTRPLHAWDM 397


>sp|Q9WLS3|RDRP_I97A1 RNA-directed RNA polymerase catalytic subunit
           OS=Influenza A virus (strain A/Hong Kong/156/1997 H5N1
           genotype Gs/Gd) GN=PB1 PE=1 SV=1
          Length = 758

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
 Frame = -2

Query: 421 HPLSALAILICCRIVQSGVPLRIHEQIVRLNAIEERLSVHCQ----PFSLRGPLT*WSKH 254
           H + ALA  IC ++ QSG+P+  +E+  +L  +  ++  + Q     F++ G  T W+++
Sbjct: 253 HFVEALARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSFTVTGDNTKWNEN 312


>sp|O89749|RDRP_I97A0 RNA-directed RNA polymerase catalytic subunit
           OS=Influenza A virus (strain A/Chicken/Hong
           Kong/220/1997 H5N1 genotype Gs/Gd) GN=PB1 PE=3 SV=1
          Length = 758

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
 Frame = -2

Query: 421 HPLSALAILICCRIVQSGVPLRIHEQIVRLNAIEERLSVHCQ----PFSLRGPLT*WSKH 254
           H + ALA  IC ++ QSG+P+  +E+  +L  +  ++  + Q     F++ G  T W+++
Sbjct: 253 HFVEALARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNSQDTELSFTVTGDNTKWNEN 312


>sp|P77044|MHPC_ECOLI
           2-hydroxy-6-oxononadienedioate/2-hydroxy-6-
           oxononatrienedioate hydrolase OS=Escherichia coli
           (strain K12) GN=mhpC PE=1 SV=3
          Length = 293

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 440 NFSQCKASIVRIGYSYLLPDCPKWG 366
           NFS+    +V  GY  +L DCP WG
Sbjct: 58  NFSRNIDPLVEAGYRVILLDCPGWG 82


>sp|A7ZWZ6|MHPC_ECOHS
           2-hydroxy-6-oxononadienedioate/2-hydroxy-6-
           oxononatrienedioate hydrolase OS=Escherichia coli O9:H4
           (strain HS) GN=mhpC PE=3 SV=1
          Length = 293

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 440 NFSQCKASIVRIGYSYLLPDCPKWG 366
           NFS+    +V  GY  +L DCP WG
Sbjct: 58  NFSRNIDPLVEAGYRVILLDCPGWG 82


>sp|Q8X5K0|MHPC_ECO57
           2-hydroxy-6-oxononadienedioate/2-hydroxy-6-
           oxononatrienedioate hydrolase OS=Escherichia coli
           O157:H7 GN=mhpC PE=3 SV=2
          Length = 293

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 440 NFSQCKASIVRIGYSYLLPDCPKWG 366
           NFS+    +V  GY  +L DCP WG
Sbjct: 58  NFSRNIDPLVEAGYRVILLDCPGWG 82
tr_hit_id A1TWB1
Definition tr|A1TWB1|A1TWB1_ACIAC Putative uncharacterized protein OS=Acidovorax avenae subsp. citrulli (strain AAC00-1)
Align length 47
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918201|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_F12.
         (440 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A1TWB1|A1TWB1_ACIAC Putative uncharacterized protein OS=Acido...    34   3.2  

>tr|A1TWB1|A1TWB1_ACIAC Putative uncharacterized protein
           OS=Acidovorax avenae subsp. citrulli (strain AAC00-1)
           GN=Aave_4715 PE=3 SV=1
          Length = 224

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -2

Query: 184 IPSPLECWVNSGAPLHVPLQRLAFQDWKCWIRRNHRQLQE*RWAHTH 44
           +PS L  W  + A L +P   LA++ W C   R HR L   R AH H
Sbjct: 8   LPSSLAVWAGALATLGIP---LAYEAWSCAAAR-HRPLSRARGAHAH 50