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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918203
Clone id YMU001_000110_G02
Library
Length 488
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGCGGCCGTCTCCTTAGTCTCAGACTCCTACACATCAACATTGCCCACCAGACTCAGTAC
CCTTCTGGGACCACCATTGGGCTGCCTTCATAGCCCAACACCCCCGTTTGCTACTGGCTG
TGTCAAGTCACCTTTCCCAGGGTGCAACTCATCTTGCCCGCCTGCAAGCTGAGGCCCATA
ATGTTGCCAAAGCACCATACCTCCCCGCATTATGTTTCCCTTGATGTTGCAATGACAACG
ACCCGAGTTTGCTGCACAGCTGCGAGCTCGCATGCCTTGAGTTTACCACCTACTACCACG
GTAGATACATCATCCACGTTGCGTTCCCAGGGCTCTATCTGCTATAGGCCCGGGCAAAAA
TCTTTGGCTTGATTTGTCGGTTACTAGGCCATGGAGCTCAAAAGCCCTATTGACCGCCAA
TTTCTCACTTAAGGAGACAAAAAGTTGCGCATCAAGTACTATGAAGCTCTTGAATCCCTC
CAGAAGTA
■■Homology search results ■■ -
sp_hit_id P50801
Definition sp|P50801|VL2_HPV70 Minor capsid protein L2 OS=Human papillomavirus type 70
Align length 72
Score (bit) 30.0
E-value 5.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918203|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_G02.
         (488 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P50801|VL2_HPV70 Minor capsid protein L2 OS=Human papillomavi...    30   5.8  
sp|Q5N1J7|NUSB_SYNP6 N utilization substance protein B homolog O...    30   5.8  
sp|Q8GIR7|NUSB_SYNE7 N utilization substance protein B homolog O...    30   5.8  
sp|Q52KB6|C2CD3_MOUSE C2 domain-containing protein 3 OS=Mus musc...    30   7.6  
sp|O46598|TIMD1_CERAE Hepatitis A virus cellular receptor 1 OS=C...    29   9.9  
sp|P15941|MUC1_HUMAN Mucin-1 OS=Homo sapiens GN=MUC1 PE=1 SV=2         29   9.9  

>sp|P50801|VL2_HPV70 Minor capsid protein L2 OS=Human papillomavirus
           type 70 GN=L2 PE=3 SV=1
          Length = 466

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = +1

Query: 130 TFPRVQLILPACKLRPIMLPKHHTSPHYVSLDVAMTTTRVCCTAASSHALSLPPTTTVDT 309
           T PR  L  P+          + T P   S D+ +TT        +S  L   P T++DT
Sbjct: 369 TGPRSHLSFPSIPSTVSTKYSNTTIPFTTSWDIPVTTGPDIVLPTASPNLPFVPPTSIDT 428

Query: 310 SSTLRSQGSICY 345
           +  +  QGS  Y
Sbjct: 429 TVAIAIQGSNYY 440


>sp|Q5N1J7|NUSB_SYNP6 N utilization substance protein B homolog
           OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
           SAUG 1402/1) GN=nusB PE=3 SV=1
          Length = 213

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 444 LFVSLSEKLAVNRAFELHGLVTDKSSQRFLPGPIADRALGTQRG 313
           LF+   E++A+N A EL    +D+  +RF+ G +  R L T  G
Sbjct: 162 LFLGTPEQVAINEAVELANRYSDEEGRRFINGVL--RRLSTMLG 203


>sp|Q8GIR7|NUSB_SYNE7 N utilization substance protein B homolog
           OS=Synechococcus elongatus (strain PCC 7942) GN=nusB
           PE=3 SV=1
          Length = 213

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 444 LFVSLSEKLAVNRAFELHGLVTDKSSQRFLPGPIADRALGTQRG 313
           LF+   E++A+N A EL    +D+  +RF+ G +  R L T  G
Sbjct: 162 LFLGTPEQVAINEAVELANRYSDEEGRRFINGVL--RRLSTMLG 203


>sp|Q52KB6|C2CD3_MOUSE C2 domain-containing protein 3 OS=Mus musculus
            GN=C2cd3 PE=2 SV=2
          Length = 2323

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = +1

Query: 139  RVQLILPACKLRPIMLPKHHTSPHYVSLDVAMTTTRVCCTAASSHALSLPPTTTVDTSST 318
            R  L+LP     P+++P     P  +   + M           SH+  LPP  T D   +
Sbjct: 2232 RQTLLLP----EPVVVPNFFLPPQQLEASLRMI----------SHSPGLPPAATTDQDKS 2277

Query: 319  LRSQGSICYRP 351
              ++G++  RP
Sbjct: 2278 EATRGALAQRP 2288


>sp|O46598|TIMD1_CERAE Hepatitis A virus cellular receptor 1
           OS=Cercopithecus aethiops GN=HAVCR1 PE=1 SV=2
          Length = 478

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +1

Query: 70  TTIGLPS*PNTPVCYWLCQVTFPRVQLILPACKLRPIMLPKHHTSPHYVSLDVAM-TTTR 246
           TT+ LP+    P+   L   T   +   LP        LP   T P   +L   + TTT 
Sbjct: 170 TTMTLPTTTTLPMTTTLPTTTTVPMTTTLPTTLPTTTTLPT--TLPTTTTLPTTLPTTTT 227

Query: 247 VCCTAASSHALSLPPTTTVDTSSTL 321
           +  T       +LP TTT+ T++TL
Sbjct: 228 LPTTMTLPMTTTLPTTTTLPTTTTL 252


>sp|P15941|MUC1_HUMAN Mucin-1 OS=Homo sapiens GN=MUC1 PE=1 SV=2
          Length = 1255

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +1

Query: 157  PACKLRPIMLPKHHTSPHYVSLDVAMTTTRVCCTAASSHALSLPPTTTVDTSST 318
            PA K  P  +P HH+        +A  +T+    A+S+H  S+PP T+ + S++
Sbjct: 985  PASKSTPFSIPSHHSD---TPTTLASHSTKT--DASSTHHSSVPPLTSSNHSTS 1033
tr_hit_id B6KJ52
Definition tr|B6KJ52|B6KJ52_TOXGO Putative uncharacterized protein OS=Toxoplasma gondii ME49
Align length 102
Score (bit) 36.6
E-value 0.65
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918203|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_G02.
         (488 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6KJ52|B6KJ52_TOXGO Putative uncharacterized protein OS=Toxop...    37   0.65 
tr|A3JLC6|A3JLC6_9ALTE Putative uncharacterized protein OS=Marin...    36   0.85 
tr|Q29M60|Q29M60_DROPS GA17181 OS=Drosophila pseudoobscura pseud...    35   2.5  
tr|B4G9Q4|B4G9Q4_DROPE GL18608 OS=Drosophila persimilis GN=GL186...    35   2.5  
tr|B6X250|B6X250_9ENTR Putative uncharacterized protein OS=Provi...    34   3.2  
tr|Q01615|Q01615_PNECA Major surface glycoprotein OS=Pneumocysti...    34   4.2  
tr|Q54UJ2|Q54UJ2_DICDI RhoGEF domain-containing protein OS=Dicty...    33   5.5  
tr|B6H2F1|B6H2F1_PENCH Pc13g05130 protein OS=Penicillium chrysog...    33   5.5  
tr|Q0KA41|Q0KA41_RALEH Inosine-5'-monophosphate dehydrogenase OS...    33   7.2  
tr|Q2RTP9|Q2RTP9_RHORT Permease OS=Rhodospirillum rubrum (strain...    33   9.3  
tr|Q0C2U3|Q0C2U3_HYPNA Cytochrome c oxidase, cbb3-type, subunit ...    33   9.3  
tr|A9UXC9|A9UXC9_MONBE Predicted protein OS=Monosiga brevicollis...    33   9.3  
tr|Q9C1I3|Q9C1I3_CANAL Regulator of filamentous growth and virul...    33   9.3  
tr|Q5A271|Q5A271_CANAL Regulator of filamentous growth and virul...    33   9.3  
tr|Q5A219|Q5A219_CANAL Regulator of filamentous growth and virul...    33   9.3  

>tr|B6KJ52|B6KJ52_TOXGO Putative uncharacterized protein OS=Toxoplasma
            gondii ME49 GN=TGME49_029310 PE=4 SV=1
          Length = 4303

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
 Frame = +1

Query: 43   AHQTQYPSGTTIGLPS*PNTPVCYWL-CQVTFPRV---QLILPACKLRPIMLPKHHTSPH 210
            A +TQ P+ +++   S   T  C  L C V    +   +L   AC   P  LP  H++PH
Sbjct: 1897 ASKTQAPTASSLRAES---TNACETLTCTVALASLFPPRLASSACSEPPNALPSFHSAPH 1953

Query: 211  YVSLDVAMTTTRVCCTAASSHALSLPPTTTVDTSSTLRSQGS 336
              +L V+ +T  +     + H +SL P ++  +SS+  S  S
Sbjct: 1954 SRTLSVSCSTAPL---VPAPHLVSLTPASSSPSSSSSPSSAS 1992


>tr|A3JLC6|A3JLC6_9ALTE Putative uncharacterized protein
           OS=Marinobacter sp. ELB17 GN=MELB17_13814 PE=4 SV=1
          Length = 137

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = +3

Query: 42  CPPDSVPFWDHHWAAFIAQHPRLLLA-VSSHLSQG---ATHLARLQAEAHNVAKAPY 200
           CPP   P W   W+ F+A+H    +A V+S L +G   +    R +  AHNV +AP+
Sbjct: 58  CPPSDEPHWPRLWSEFLAEHQIPAVACVASALRRGLIDSGEQKRYELSAHNV-RAPF 113


>tr|Q29M60|Q29M60_DROPS GA17181 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA17181 PE=4 SV=1
          Length = 466

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +1

Query: 1   RGRLLSLRLLHINIAHQTQYPSGTTIGLPS*PN----TPVCYWLCQVTFP 138
           RGRL S+ LL +N    T Y   TT+   + P      PVCY++C   FP
Sbjct: 154 RGRLGSMILLSVNTGVLTGYIVSTTVSYFTAPPFIIALPVCYFICNFLFP 203


>tr|B4G9Q4|B4G9Q4_DROPE GL18608 OS=Drosophila persimilis GN=GL18608
           PE=4 SV=1
          Length = 466

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +1

Query: 1   RGRLLSLRLLHINIAHQTQYPSGTTIGLPS*PN----TPVCYWLCQVTFP 138
           RGRL S+ LL +N    T Y   TT+   + P      PVCY++C   FP
Sbjct: 154 RGRLGSMILLSVNTGVLTGYIISTTVSYFTAPPFIIALPVCYFICNFLFP 203


>tr|B6X250|B6X250_9ENTR Putative uncharacterized protein
           OS=Providencia rustigianii DSM 4541 GN=PROVRUST_01282
           PE=4 SV=1
          Length = 299

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +1

Query: 121 CQVTFPRVQLILPACKL-RPIMLPKHHTSPHYVSLDVAMTTTRVCCTAASSHALSLPPTT 297
           C +  P +  +LP+C +  P+ L     + + V+ ++A     + CT   S      P  
Sbjct: 175 CSIHVPEIP-VLPSCDIFMPLTLSHGEVNANNVNGNIAKVNGDITCTGDMSATFQFLPEN 233

Query: 298 TVDTSSTLRSQGSIC 342
            VD S  ++SQ  +C
Sbjct: 234 EVDLSQGVKSQLDVC 248


>tr|Q01615|Q01615_PNECA Major surface glycoprotein OS=Pneumocystis
           carinii PE=2 SV=1
          Length = 202

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +1

Query: 163 CKLRPIMLPKHHTSPHYVSLDVAMTTTRVCCTAASSHALSLPPTTTVDTSSTLRSQGS 336
           CKL P+ +  HHT       +++ TTT    T  ++   +   TTT  T++T   QGS
Sbjct: 55  CKLEPLEIKPHHTE---TQKEISTTTT----TTTTTTTTTTTTTTTTTTTTTTTKQGS 105


>tr|Q54UJ2|Q54UJ2_DICDI RhoGEF domain-containing protein
           OS=Dictyostelium discoideum GN=gxcEE PE=4 SV=1
          Length = 651

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = +1

Query: 94  PNTPVCYWLCQVTFPRVQLILPACKLRPIMLPKHHTSPHYVSLDVAMTTTRVCCTAASSH 273
           P  P  Y L  +T   +QL  P+  L+P + P  H+SP    + +   +     TA ++ 
Sbjct: 447 PLKPTNYPLQTITNTEIQLS-PSSSLKPPLSPLRHSSPFSEKVLIEKLSINSSTTATTAI 505

Query: 274 ALSLPPTTTVDTSS 315
           A +   TTT  T+S
Sbjct: 506 ATTATATTTTTTTS 519


>tr|B6H2F1|B6H2F1_PENCH Pc13g05130 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc13g05130 PE=4 SV=1
          Length = 696

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = +3

Query: 9   SP*SQTPTHQHCPPDSVPFWDHHWAAFIAQH--PRLLLAVSSHLSQGATH 152
           SP  QT TH H   D   FW HH A     H   R L   +  L+ G  H
Sbjct: 2   SPHPQTTTHSHSLGDPETFWSHHAARLHWHHKPSRALTRKTKFLASGTKH 51


>tr|Q0KA41|Q0KA41_RALEH Inosine-5'-monophosphate dehydrogenase
           OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428
           / Stanier 337) GN=guaB PE=4 SV=1
          Length = 487

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 432 LSEKLAVNRAFELHGLVTDKSSQRFLPGPIADR 334
           L   L VN+AFEL GL+T K  Q+ +  P+A +
Sbjct: 178 LERVLVVNQAFELRGLITVKDIQKAVDNPLASK 210


>tr|Q2RTP9|Q2RTP9_RHORT Permease OS=Rhodospirillum rubrum (strain
           ATCC 11170 / NCIB 8255) GN=Rru_A1696 PE=4 SV=1
          Length = 180

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 297 HGRYIIHVAFPGLYLL*AR-AKIFGLICRLLGHGAQKP 407
           HGR +IH A  GL+L+ A  A IFG++   LG   Q P
Sbjct: 122 HGRMMIHAALVGLFLIVAHIAMIFGMLDPTLGGAWQAP 159