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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918204
Clone id YMU001_000110_G03
Library
Length 471
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGACCATTGATAATGTGGTCAATGCTGAGCGTTTTTTTTGATATTTTCTTTAAGCTTGCC
AAAGATATGGATGGGTCTCGTTCACCGTGAAATTTGGGCTGTCATGACAAATTTGCTACT
TCCACAAGAGCCTCTCCCGCTTGAGAGTTTGACAACTTACAGGACCTTATTACCATTCCA
GCTTGTATATGCTACTTCCATATGTGCCTATTCCCCATTCTTTGTAGAAAAACTCTTGAG
AGGCTAGCAACCTAAAGGACCCCATAGCCACTCCAACATCCGTGGTCTCATAACCAATGC
AGTTTATAAAACCCTTGCTTTGTAGCGCTGATTATCAATTGGGTGGTTGAGATGCTACAA
ACACAAGATGATACCACTGTGCAGGGAAAGTCAAAGCGGAACGTTGGTCAAAGTTCCAGG
CCTGATAAAGGCAAAGGGACAAGTAAATGAACCAAGCTCGTCAAAGACCCC
■■Homology search results ■■ -
sp_hit_id Q3YWL3
Definition sp|Q3YWL3|BIOH_SHISS Carboxylesterase bioH OS=Shigella sonnei (strain Ss046)
Align length 53
Score (bit) 30.0
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918204|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_G03.
         (471 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3YWL3|BIOH_SHISS Carboxylesterase bioH OS=Shigella sonnei (s...    30   5.3  
sp|Q83PW0|BIOH_SHIFL Carboxylesterase bioH OS=Shigella flexneri ...    30   5.3  
sp|Q31VM0|BIOH_SHIBS Carboxylesterase bioH OS=Shigella boydii se...    30   5.3  
sp|P13001|BIOH_ECOLI Carboxylesterase bioH OS=Escherichia coli (...    30   5.3  
sp|B1IP53|BIOH_ECOLC Carboxylesterase bioH OS=Escherichia coli (...    30   5.3  
sp|A8A5M0|BIOH_ECOHS Carboxylesterase bioH OS=Escherichia coli O...    30   5.3  
sp|A7ZSU1|BIOH_ECO24 Carboxylesterase bioH OS=Escherichia coli O...    30   5.3  

>sp|Q3YWL3|BIOH_SHISS Carboxylesterase bioH OS=Shigella sonnei
           (strain Ss046) GN=bioH PE=3 SV=1
          Length = 256

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -2

Query: 269 GYGVL*VASLSRVFLQRMGNRHIWK*HIQAGMVIRSCKLSNSQAGEALVEVAN 111
           G+G L +A ++   LQ+  ++ IW      G+V     L++ +  +ALV VA+
Sbjct: 55  GFGALSLADMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQALVTVAS 107


>sp|Q83PW0|BIOH_SHIFL Carboxylesterase bioH OS=Shigella flexneri
           GN=bioH PE=3 SV=4
          Length = 262

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -2

Query: 269 GYGVL*VASLSRVFLQRMGNRHIWK*HIQAGMVIRSCKLSNSQAGEALVEVAN 111
           G+G L +A ++   LQ+  ++ IW      G+V     L++ +  +ALV VA+
Sbjct: 55  GFGALSLADMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQALVTVAS 107


>sp|Q31VM0|BIOH_SHIBS Carboxylesterase bioH OS=Shigella boydii
           serotype 4 (strain Sb227) GN=bioH PE=3 SV=1
          Length = 256

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -2

Query: 269 GYGVL*VASLSRVFLQRMGNRHIWK*HIQAGMVIRSCKLSNSQAGEALVEVAN 111
           G+G L +A ++   LQ+  ++ IW      G+V     L++ +  +ALV VA+
Sbjct: 55  GFGALSLADMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQALVTVAS 107


>sp|P13001|BIOH_ECOLI Carboxylesterase bioH OS=Escherichia coli
           (strain K12) GN=bioH PE=1 SV=1
          Length = 256

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -2

Query: 269 GYGVL*VASLSRVFLQRMGNRHIWK*HIQAGMVIRSCKLSNSQAGEALVEVAN 111
           G+G L +A ++   LQ+  ++ IW      G+V     L++ +  +ALV VA+
Sbjct: 55  GFGALSLADMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQALVTVAS 107


>sp|B1IP53|BIOH_ECOLC Carboxylesterase bioH OS=Escherichia coli
           (strain ATCC 8739 / DSM 1576 / Crooks) GN=bioH PE=3 SV=1
          Length = 256

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -2

Query: 269 GYGVL*VASLSRVFLQRMGNRHIWK*HIQAGMVIRSCKLSNSQAGEALVEVAN 111
           G+G L +A ++   LQ+  ++ IW      G+V     L++ +  +ALV VA+
Sbjct: 55  GFGALSLADMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQALVTVAS 107


>sp|A8A5M0|BIOH_ECOHS Carboxylesterase bioH OS=Escherichia coli
           O9:H4 (strain HS) GN=bioH PE=3 SV=1
          Length = 256

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -2

Query: 269 GYGVL*VASLSRVFLQRMGNRHIWK*HIQAGMVIRSCKLSNSQAGEALVEVAN 111
           G+G L +A ++   LQ+  ++ IW      G+V     L++ +  +ALV VA+
Sbjct: 55  GFGALSLADMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQALVTVAS 107


>sp|A7ZSU1|BIOH_ECO24 Carboxylesterase bioH OS=Escherichia coli
           O139:H28 (strain E24377A / ETEC) GN=bioH PE=3 SV=1
          Length = 256

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -2

Query: 269 GYGVL*VASLSRVFLQRMGNRHIWK*HIQAGMVIRSCKLSNSQAGEALVEVAN 111
           G+G L +A ++   LQ+  ++ IW      G+V     L++ +  +ALV VA+
Sbjct: 55  GFGALSLADMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQALVTVAS 107
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918204|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_G03.
         (471 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******