NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918207
Clone id YMU001_000110_G06
Library
Length 424
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATCGTATCTTTTCAACATGCATCTCCTTTGGCACAACAAGGCACATTGAGGTCTAGGAAA
GGGATAAATGTGCAGGCCAATTCTGAGGGTAGTGAGTTGGGCGGCGGCCGGAGAGGCGTA
AAAGGGATAGAGCTCTTGAAATCTCCTTTCGTCTGATTATCATCTTCAATTAATTCACTG
TCATTAATCCCCATTGCCTCCAAACAGCCTCTGTCACTTGAGTTGATGCAATCCTTAAGC
ATTCTTTTCTTTGGTGTCCGGGGCAGCTTGATTGTTGCATGCGGCAGATATTCCATCGAC
GACGTAGATGAAGATGTTCCATACAAATTACTGAACATATGGTCCTCAGGATTCTGCTGC
TCTTTGATGTCAAGGGGCCCCAATGTTCCTGACATCCATAAATCTCCCATTGCCGGTGAG
CTAT
■■Homology search results ■■ -
sp_hit_id P80456
Definition sp|P80456|ADO_RABIT Aldehyde oxidase OS=Oryctolagus cuniculus
Align length 54
Score (bit) 30.8
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918207|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_G06.
         (424 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P80456|ADO_RABIT Aldehyde oxidase OS=Oryctolagus cuniculus GN...    31   2.3  
sp|P53283|TPO2_YEAST Polyamine transporter 2 OS=Saccharomyces ce...    30   3.0  
sp|P0AC87|PHSG_SHIFL Glycogen phosphorylase OS=Shigella flexneri...    30   3.0  
sp|P0AC86|PHSG_ECOLI Glycogen phosphorylase OS=Escherichia coli ...    30   3.0  
sp|Q44603|TRPC_BUCSC Tryptophan biosynthesis protein trpCF OS=Bu...    30   3.9  
sp|Q5RAL2|S26A7_PONAB Anion exchange transporter OS=Pongo abelii...    30   4.0  
sp|Q8TE54|S26A7_HUMAN Anion exchange transporter OS=Homo sapiens...    30   4.0  
sp|P08251|AT1B1_CHICK Sodium/potassium-transporting ATPase subun...    30   5.0  
sp|Q9W6V6|TEN1_CHICK Teneurin-1 OS=Gallus gallus GN=ODZ1 PE=2 SV=1     29   6.6  
sp|O05974|DPO3A_RICPR DNA polymerase III subunit alpha OS=Ricket...    29   6.6  
sp|Q7JUY7|CED6_DROME PTB domain-containing adapter protein ced-6...    29   6.6  
sp|Q68FD7|FNIP1_MOUSE Folliculin-interacting protein 1 OS=Mus mu...    25   6.9  
sp|Q8K1Q0|NMT1_RAT Glycylpeptide N-tetradecanoyltransferase 1 OS...    29   8.6  
sp|O70310|NMT1_MOUSE Glycylpeptide N-tetradecanoyltransferase 1 ...    29   8.6  
sp|P30419|NMT1_HUMAN Glycylpeptide N-tetradecanoyltransferase 1 ...    29   8.6  
sp|P31717|NMT1_BOVIN Glycylpeptide N-tetradecanoyltransferase 1 ...    29   8.6  
sp|Q8CGM1|BAI2_MOUSE Brain-specific angiogenesis inhibitor 2 OS=...    29   8.8  
sp|O60241|BAI2_HUMAN Brain-specific angiogenesis inhibitor 2 OS=...    29   8.8  

>sp|P80456|ADO_RABIT Aldehyde oxidase OS=Oryctolagus cuniculus
           GN=AOX1 PE=1 SV=2
          Length = 1334

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 233 DCINSSDRG-CLEAMGINDSELIEDDNQTKGDFKSSIPFTPLRPPPNSL-PSEL 78
           DC  + + G C    GIN    +E++NQT+ +  S   + PL P    + P EL
Sbjct: 169 DCCQNKENGFCCLDQGINGLPEVEEENQTRPNLFSEEEYLPLDPTQELIFPPEL 222


>sp|P53283|TPO2_YEAST Polyamine transporter 2 OS=Saccharomyces
           cerevisiae GN=TPO2 PE=1 SV=1
          Length = 614

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 8/141 (5%)
 Frame = -3

Query: 413 AMGDLWMSGTLGPLDIKEQQNPEDHMFSNLY-----GXXXXXXSMEYLPHATIKLPRTPK 249
           ++ DL ++      DI   Q  ++++F   Y            +++ +      L RT  
Sbjct: 50  SLQDLGVTSAAPVPDINAPQTAKNNIFPEEYTMETPSGLVPVATLQSMGRTASALSRTRT 109

Query: 248 KRMLKDCINSSDRGCLEAMGINDSELIED---DNQTKGDFKSSIPFTPLRPPPNSLPSEL 78
           K++ +   NSS  G  E M   ++E  ED   +N+   + +     T     P++ PS +
Sbjct: 110 KQLNRTATNSSSTG-KEEMEEEETEEREDQSGENELDPEIEFVTFVTGDPENPHNWPSWV 168

Query: 77  ACTFIPFLDLNVPCCAKGDAC 15
             ++   L + V C A G AC
Sbjct: 169 RWSYTVLLSILVICVAYGSAC 189


>sp|P0AC87|PHSG_SHIFL Glycogen phosphorylase OS=Shigella flexneri
           GN=glgP PE=3 SV=1
          Length = 815

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 260 RTPKKRMLKDCINSSDRGCLEAMGINDSELIEDDN 156
           RT    ML   I    +G LEAMG+N  ELI+++N
Sbjct: 83  RTLSNAMLSLGIYEDVQGALEAMGLNLEELIDEEN 117


>sp|P0AC86|PHSG_ECOLI Glycogen phosphorylase OS=Escherichia coli
           (strain K12) GN=glgP PE=3 SV=1
          Length = 815

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 260 RTPKKRMLKDCINSSDRGCLEAMGINDSELIEDDN 156
           RT    ML   I    +G LEAMG+N  ELI+++N
Sbjct: 83  RTLSNAMLSLGIYEDVQGALEAMGLNLEELIDEEN 117


>sp|Q44603|TRPC_BUCSC Tryptophan biosynthesis protein trpCF
           OS=Buchnera aphidicola subsp. Schlechtendalia chinensis
           GN=trpC PE=3 SV=1
          Length = 461

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 22/82 (26%), Positives = 37/82 (45%)
 Frame = -3

Query: 353 NPEDHMFSNLYGXXXXXXSMEYLPHATIKLPRTPKKRMLKDCINSSDRGCLEAMGINDSE 174
           N   H+F N++G      +   L +  +K         +K+CI++SD GC    G++ + 
Sbjct: 376 NVNKHVFDNIHGGSGTPFNWYLLKNYNLKNVILAGGLNIKNCISASDLGC---FGLDFNS 432

Query: 173 LIEDDNQTKGDFKSSIPFTPLR 108
            IE     K   K+ + F  LR
Sbjct: 433 GIEISPGLKDKKKTFLIFRSLR 454


>sp|Q5RAL2|S26A7_PONAB Anion exchange transporter OS=Pongo abelii
           GN=SLC26A7 PE=2 SV=1
          Length = 656

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +1

Query: 211 LSLELMQSLSILFFGVRGSLIVACG-----RYSIDDVDEDVPYKLLNIWSSGFCC 360
           LS  + ++  +   G   SL +A G     +YSIDD  E + + L NI SS F C
Sbjct: 305 LSAVITEAFGVALVGYVASLALAQGSAKKFKYSIDDNQEFLAHGLSNIVSSFFFC 359


>sp|Q8TE54|S26A7_HUMAN Anion exchange transporter OS=Homo sapiens
           GN=SLC26A7 PE=2 SV=2
          Length = 656

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +1

Query: 211 LSLELMQSLSILFFGVRGSLIVACG-----RYSIDDVDEDVPYKLLNIWSSGFCC 360
           LS  + ++  +   G   SL +A G     +YSIDD  E + + L NI SS F C
Sbjct: 305 LSAVITEAFGVALVGYVASLALAQGSAKKFKYSIDDNQEFLAHGLSNIVSSFFFC 359


>sp|P08251|AT1B1_CHICK Sodium/potassium-transporting ATPase subunit
           beta-1 OS=Gallus gallus GN=ATP1B1 PE=2 SV=1
          Length = 305

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = -3

Query: 128 IPFTPLRPPPNSLPSELACTFIPFLDLNVPCCAKGD 21
           I F P  P   SLPS+LA  + P+L + V C AK D
Sbjct: 185 IGFKPKAPENESLPSDLAGKYNPYL-IPVHCVAKRD 219


>sp|Q9W6V6|TEN1_CHICK Teneurin-1 OS=Gallus gallus GN=ODZ1 PE=2 SV=1
          Length = 2705

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
 Frame = -3

Query: 245 RMLKDCINSSDRGCLEAMGINDSELIEDDNQTKGDFKSSIP--------FTPLRPPPNSL 90
           RM    + S    CL +   +   L + D++ K D ++ +P        F PL PPP   
Sbjct: 122 RMWMRGMKSEHSSCLSSRANSALSLTDTDHERKSDGENDMPGSPHNQFTFRPLPPPP--- 178

Query: 89  PSELACT 69
           P   ACT
Sbjct: 179 PPPHACT 185


>sp|O05974|DPO3A_RICPR DNA polymerase III subunit alpha
           OS=Rickettsia prowazekii GN=dnaE PE=3 SV=2
          Length = 1182

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 209 GCLEAMGINDSELIEDDNQTKGDFKSSIPFTPLRPPPNSLPSEL 78
           G ++ +  N  +L+ D+ + +G FKS   F   R PP S+ S+L
Sbjct: 871 GAIKGVTANFGKLVTDERKARGAFKSITDFIE-RLPPKSINSKL 913
tr_hit_id B1FMZ0
Definition tr|B1FMZ0|B1FMZ0_9BURK Major facilitator superfamily MFS_1 OS=Burkholderia ambifaria IOP40-10
Align length 40
Score (bit) 33.5
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918207|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_G06.
         (424 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1FMZ0|B1FMZ0_9BURK Major facilitator superfamily MFS_1 OS=Bu...    33   5.3  
tr|Q4KEU0|Q4KEU0_PSEF5 Major facilitator family protein OS=Pseud...    33   9.1  
tr|B2UH35|B2UH35_RALPJ RNA polymerase, sigma 54 subunit, RpoN OS...    33   9.2  
tr|A7C912|A7C912_BURPI RNA polymerase, sigma 54 subunit, RpoN OS...    33   9.2  
tr|A6E745|A6E745_9SPHI Glycerophosphodiester phosphodiesterase O...    33   9.2  

>tr|B1FMZ0|B1FMZ0_9BURK Major facilitator superfamily MFS_1
           OS=Burkholderia ambifaria IOP40-10
           GN=BamIOP4010DRAFT_5401 PE=4 SV=1
          Length = 401

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 259 RGSLIVACGRYSIDDVDEDVPYKLLNIWSSGFCCSLMSRG 378
           R SLI ACG +++ D   DV Y LL IW + F  +    G
Sbjct: 21  RRSLIAACGAHAVHDGLTDVIYVLLPIWQAQFAINYAQIG 60


>tr|Q4KEU0|Q4KEU0_PSEF5 Major facilitator family protein
           OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
           GN=PFL_2136 PE=4 SV=1
          Length = 392

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 259 RGSLIVACGRYSIDDVDEDVPYKLLNIWSSGFCCSLMSRG 378
           R SL+  CG +++ D   DV Y LL IW + F  S    G
Sbjct: 3   RRSLVAGCGAHAVHDGLTDVIYVLLPIWQAQFAMSYAQIG 42


>tr|B2UH35|B2UH35_RALPJ RNA polymerase, sigma 54 subunit, RpoN
           OS=Ralstonia pickettii (strain 12J) GN=Rpic_3770 PE=4
           SV=1
          Length = 500

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -3

Query: 218 SDRGCLEAMGINDSELIEDDNQTKGDFKSSIPFTPLRPPPNSLPSELACTFIPFLD 51
           S R CL  +G    E ++DD   +      IP  P+ PPP     ++A   +  LD
Sbjct: 154 SQRDCL--LGQTVIEALDDDGYLRQLLSELIPLAPVEPPPTEKEMQIALALVQSLD 207


>tr|A7C912|A7C912_BURPI RNA polymerase, sigma 54 subunit, RpoN
           OS=Ralstonia pickettii 12D GN=Rpic12DDRAFT_4874 PE=4
           SV=1
          Length = 500

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -3

Query: 218 SDRGCLEAMGINDSELIEDDNQTKGDFKSSIPFTPLRPPPNSLPSELACTFIPFLD 51
           S R CL  +G    E ++DD   +      IP  P+ PPP     ++A   +  LD
Sbjct: 154 SQRDCL--LGQTVIEALDDDGYLRQLLSELIPLAPVEPPPTEKEMQIALALVQSLD 207


>tr|A6E745|A6E745_9SPHI Glycerophosphodiester phosphodiesterase
           OS=Pedobacter sp. BAL39 GN=PBAL39_21700 PE=4 SV=1
          Length = 305

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -3

Query: 410 MGDLWMSGTLGPLDIKEQQNPEDHMFSNLYGXXXXXXSMEYLPHATIKLPR 258
           +G + + GT+G LD +   NP+ +++ NL+       S + +P A I+L R
Sbjct: 240 LGIICILGTMGNLDKRAAANPDKNIYYNLFAGGADVLSTDRIPEAGIELDR 290