BP918209
Clone id YMU001_000110_G08
Library
Length 518
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ACAAGGCTTCTTGACATTTTTAAAAGATGAAATACTTGCCAAAGGAAAGCTATCAATCAT
ACAAATTTTTGGCAATCAAGGCCGACTTTTGTCACCAGGTTGATTGAATACTACACCATC
TCATACACAATCTGAGAACCAAATGCTGCGTGCTAAGTACATTTCTTTTACAAGCTAGGG
GCATGCTCTAGCTGTTCTTTGAATATCTCCTTGTGGGGCAAAGGAAAAAAACAATAGTCA
AAATTGCAGCTTACTGTGAAGCTCTACTGCCACCAACTGGCGATCCTCAATTACATGTGA
CATCCTGGATATGTAAGAAATTTTAAACCTTGATACATCTTTCATCTAGGCGGGTTTGTT
CACCTGCGCTGAAAGCCACTAGGCTTGGACCATCACACAATTGTGCGTGTAACTCCCAAG
AAACTGAAGTACAGTGCCAAAGACAGGCTGAGCAATATGTGCTGAAACCTGTAGACACGT
AAAGTTCTTTGAAGAACTTGCATCTGAAGACTGTGATC
■■Homology search results ■■ -
sp_hit_id Q9UM47
Definition sp|Q9UM47|NOTC3_HUMAN Neurogenic locus notch homolog protein 3 OS=Homo sapiens
Align length 79
Score (bit) 29.6
E-value 8.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918209|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_G08.
(518 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9UM47|NOTC3_HUMAN Neurogenic locus notch homolog protein 3 O... 30 8.8
sp|Q9R0B6|LAMC3_MOUSE Laminin subunit gamma-3 OS=Mus musculus GN... 30 8.8

>sp|Q9UM47|NOTC3_HUMAN Neurogenic locus notch homolog protein 3
OS=Homo sapiens GN=NOTCH3 PE=1 SV=1
Length = 2321

Score = 29.6 bits (65), Expect = 8.8
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +3

Query: 237 VKIAAYCEALLPPTGDPQL-HVTSWICKKF*TLIHLSSRRVCSPALKATRLGPSHNCACN 413
V+ AYC L PP +L + S C++ I + ++C + SH C C
Sbjct: 1016 VQTGAYC--LCPPGWSGRLCDIRSLPCREAAAQIGVRLEQLCQAGGQCVDEDSSHYCVCP 1073

Query: 414 SQETEVQCQRQAEQYVLKP 470
T C+++ + + +P
Sbjct: 1074 EGRTGSHCEQEVDPCLAQP 1092


>sp|Q9R0B6|LAMC3_MOUSE Laminin subunit gamma-3 OS=Mus musculus
GN=Lamc3 PE=2 SV=1
Length = 1581

Score = 29.6 bits (65), Expect = 8.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2

Query: 502 CKFFKELYVSTGFSTYCSACLWHCTSVSWELHAQLCD 392
C F +ELY STG +C C H T H + C+
Sbjct: 345 CTFDRELYRSTGHGGHCQRCRDHTTGP----HCERCE 377


tr_hit_id O13149
Definition tr|O13149|O13149_FUGRU Notch 2 (Fragment) OS=Fugu rubripes
Align length 72
Score (bit) 33.1
E-value 8.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918209|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_G08.
(518 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|O13149|O13149_FUGRU Notch 2 (Fragment) OS=Fugu rubripes PE=4 ... 33 8.5

>tr|O13149|O13149_FUGRU Notch 2 (Fragment) OS=Fugu rubripes PE=4 SV=1
Length = 2447

Score = 33.1 bits (74), Expect = 8.5
Identities = 19/72 (26%), Positives = 26/72 (36%)
Frame = +3

Query: 255 CEALLPPTGDPQLHVTSWICKKF*TLIHLSSRRVCSPALKATRLGPSHNCACNSQETEVQ 434
C + TG P V C+ F L VC A + +G SH C C T
Sbjct: 1042 CHCTMGWTG-PYCDVPDMSCRDFAARKGLEEENVCKNAGRCVNVGNSHKCECQPGYTGSY 1100

Query: 435 CQRQAEQYVLKP 470
C+ ++ P
Sbjct: 1101 CEEMVDECKSNP 1112