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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918213
Clone id YMU001_000110_G12
Library
Length 250
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TAGAACCTTCAGGCATGATCACCCTCTGCTTCTTCTCGAGAGTCAACTGCTTTTGGAGTT
CTTGCATTTGCGCTTCATACATTTGACTCTCCCGAAATAATTTGAGTTGAGCTTGTAGCT
CTAACTCGCGCAGGCGATGCTCTCAGCCTCTGAATGGTTTGATCTTTGACTTTTAATTGG
TCCTTGAGCTCAATGACTTCATCTATGCTTGCTTCTTGTTCTATTTCCGCCTTCTCCTTA
GCATTCTTCA
■■Homology search results ■■ -
sp_hit_id Q9ZU70
Definition sp|Q9ZU70|ATB21_ARATH Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana
Align length 65
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918213|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_G12.
         (250 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ZU70|ATB21_ARATH Homeobox-leucine zipper protein ATHB-21 OS...    33   0.34 
sp|Q80U62|K0226_MOUSE Uncharacterized protein KIAA0226 OS=Mus mu...    32   1.3  
sp|P54257|HAP1_HUMAN Huntingtin-associated protein 1 OS=Homo sap...    30   2.8  
sp|O97961|KTN1_VULVU Kinectin OS=Vulpes vulpes GN=KTN1 PE=2 SV=1       30   2.9  
sp|Q92622|K0226_HUMAN Uncharacterized protein KIAA0226 OS=Homo s...    30   2.9  
sp|O23208|ATB40_ARATH Homeobox-leucine zipper protein ATHB-40 OS...    30   2.9  
sp|Q11072|YT44_CAEEL Uncharacterized RING finger protein B0416.4...    30   3.7  
sp|A6PWD2|FHAD1_MOUSE Forkhead-associated domain-containing prot...    29   8.3  

>sp|Q9ZU70|ATB21_ARATH Homeobox-leucine zipper protein ATHB-21
           OS=Arabidopsis thaliana GN=ATHB-21 PE=2 SV=1
          Length = 220

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 26/65 (40%), Positives = 32/65 (49%)
 Frame = -3

Query: 248 KNAKEKAEIEQEASIDEVIELKDQLKVKDQTIQRLRASPARVRATSSTQIISGESNV*SA 69
           KNA E   +E+     EVI LK+QL   ++ IQRL     RV  T S   IS    +  A
Sbjct: 126 KNAYETTVVEKCRLDSEVIHLKEQLYEAEREIQRL---AKRVEGTLSNSPISSSVTI-EA 181

Query: 68  NARTP 54
           N  TP
Sbjct: 182 NHTTP 186


>sp|Q80U62|K0226_MOUSE Uncharacterized protein KIAA0226 OS=Mus
           musculus GN=Kiaa0226 PE=2 SV=2
          Length = 956

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -3

Query: 236 EKAEIEQEASIDEVIELKDQLKVKDQTIQRLRASPA-RVRATSSTQIISGESNV*SANAR 60
           E+ E+E+E S  E+ ELK +++++ Q I+     PA R     S ++ S  S   S ++ 
Sbjct: 504 EEEEVEEEDSDREIQELKQKIRLRRQQIRTKNLLPAYRETENGSFRVTSSSSQFSSRDST 563

Query: 59  TPKAVDSREEAE 24
                 S E+A+
Sbjct: 564 QLSESGSAEDAD 575


>sp|P54257|HAP1_HUMAN Huntingtin-associated protein 1 OS=Homo
           sapiens GN=HAP1 PE=1 SV=2
          Length = 671

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
 Frame = -1

Query: 115 QAQ-LKLFRESQMYEAQMQELQKQLTLEKKQRVIMPEGS 2
           QAQ LKL +  +MY A+ ++LQKQL  EK+ ++ + E S
Sbjct: 388 QAQVLKLQQRCRMYGAETEKLQKQLASEKEIQMQLQEES 426


>sp|O97961|KTN1_VULVU Kinectin OS=Vulpes vulpes GN=KTN1 PE=2 SV=1
          Length = 1330

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 12/81 (14%)
 Frame = -3

Query: 236  EKAEIEQEASIDEVIELKDQL-----KVKDQTIQRLRASPARVRATSSTQII-------S 93
            EKAEIE+   + EV ELK QL     K++ +  +R + +    +A  S  +I       +
Sbjct: 1215 EKAEIERSTYVTEVRELKTQLNETLTKLRTEQSERQKVAGDLHKAQQSLDLIQSKIVKAA 1274

Query: 92   GESNV*SANARTPKAVDSREE 30
            G++ V   +  +P+A  S +E
Sbjct: 1275 GDTTVIENSDVSPEAESSEKE 1295


>sp|Q92622|K0226_HUMAN Uncharacterized protein KIAA0226 OS=Homo
           sapiens GN=KIAA0226 PE=1 SV=3
          Length = 972

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
 Frame = -3

Query: 236 EKAEIEQEASIDEVIELKDQLKVKDQTIQRLRASP-------ARVRATSSTQIISGESNV 78
           E+ E+E+E S  E+ ELK +++++ Q I+     P          R TSS+   S   + 
Sbjct: 519 EEEEVEEEDSDREIQELKQKIRLRRQQIRTKNLLPMYQEAEHGSFRVTSSSSQFSSRDSA 578

Query: 77  *SANARTPKAVDSREEAEGD 18
             +++ +   VD  E  + D
Sbjct: 579 QLSDSGSADEVDEFEIQDAD 598


>sp|O23208|ATB40_ARATH Homeobox-leucine zipper protein ATHB-40
           OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=2
          Length = 217

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 27/77 (35%), Positives = 39/77 (50%)
 Frame = -3

Query: 248 KNAKEKAEIEQEASIDEVIELKDQLKVKDQTIQRLRASPARVRATSSTQIISGESNV*SA 69
           KN+ +   +++     EVI+LK+QL   ++ IQRL     RV   SS   IS   +V  A
Sbjct: 121 KNSHDNVVVDKCRLESEVIQLKEQLYDAEREIQRL---AERVEGGSSNSPISSSVSV-EA 176

Query: 68  NARTPKAVDSREEAEGD 18
           N  TP   D +   +GD
Sbjct: 177 N-ETPFFGDYKVGDDGD 192


>sp|Q11072|YT44_CAEEL Uncharacterized RING finger protein B0416.4
           OS=Caenorhabditis elegans GN=B0416.4 PE=2 SV=1
          Length = 218

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -3

Query: 248 KNAKEKAEIEQEASIDEVIELKDQLKVKDQTIQRLRASPAR 126
           K  +E+ + E+E   D++ +L+D++K+K+Q I   +    R
Sbjct: 25  KRLEEQIKAEEEQFSDKMKQLEDEIKIKEQVITMFKRKTVR 65


>sp|A6PWD2|FHAD1_MOUSE Forkhead-associated domain-containing protein 1
            OS=Mus musculus GN=Fhad1 PE=2 SV=1
          Length = 1420

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 22/76 (28%), Positives = 34/76 (44%)
 Frame = -3

Query: 248  KNAKEKAEIEQEASIDEVIELKDQLKVKDQTIQRLRASPARVRATSSTQIISGESNV*SA 69
            K  +++ E ++    +E+ E K+Q+K   QTI  L     +V  T   Q I GE      
Sbjct: 877  KALQDERESQKHGFEEEISEYKEQIKQHSQTIVSLEERLCQV--TQYYQKIEGEITTLKN 934

Query: 68   NARTPKAVDSREEAEG 21
            N   PK   S++   G
Sbjct: 935  NDTGPKEEASQDLTAG 950
tr_hit_id Q7XBE0
Definition tr|Q7XBE0|Q7XBE0_MAIZE Putative gypsy-type retrotransposon OS=Zea mays
Align length 61
Score (bit) 33.1
E-value 7.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918213|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_G12.
         (250 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7XBE0|Q7XBE0_MAIZE Putative gypsy-type retrotransposon OS=Ze...    33   7.2  

>tr|Q7XBE0|Q7XBE0_MAIZE Putative gypsy-type retrotransposon OS=Zea
            mays GN=Z013I05_7 PE=4 SV=1
          Length = 957

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -3

Query: 215  EASIDEVIELKDQLKVKDQTIQRLRASP---ARVRATSSTQIISGESNV*SANARTPKAV 45
            + S+DEV  LK  +  KD TI+ LRAS    A+   T+     + E    +  A+  KA+
Sbjct: 850  QESVDEVTRLKQLISAKDATIKELRASKKTIAQELETAQLAAKTAEETAATLKAQRDKAM 909

Query: 44   D 42
            D
Sbjct: 910  D 910