BP918214 |
Clone id |
YMU001_000110_H01 |
Library |
YMU01 |
Length |
565 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000110_H01. |
Accession |
BP918214 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL503Contig1 |
Sequence |
CGCAGTGCAAAATTGAGGCAGCCACCCTCTGCTGGATGGTATCCCAGGTCGCAAACATGG GAGCCCCTTCCTACTAGCTTGGTTACTCATAGTCAGCCAAGCAGCTTTACAGGACTTGTC TCAAATCCAGACATTTCACGTCTGGATGCGGACGTCCTGTACAGGCAGAGGCTTGATGCA TTGGACAGGAGAGCTTACGTGCTGGATCCTGTATTGGATGCATCTCTGAGACATGTGGGT GTCCCCAGTGAATATGGGCGCAGAAGGGTTCCTGATGATCTATATGCAGTGGAGCGCAGT CTGCCTCCATCTAAAGGGGCACTGCTCTATGATGATCTTTACAGGGAGATGCCCTACCAA AGGGAAGCTCTTTACAGCAGCCGTGATGATGGCCGTTCGGCGCTTTCTTACAAGCCCTTA ACCTGGGGCTATTAGGAGTAGAGGAGCTCTTGAACTTGGTGCTCATTGTGGGACCGTATT TCTTTGGTTTGTCATATTAGATGCCTTGAAGCAACTATGGCTTTCTTACTGGAGCACTCA ACAGCTGGTCTATCTTGCTGTGACC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A7M7C7 |
Definition |
sp|A7M7C7|CORL2_MOUSE Ladybird homeobox corepressor 1-like protein OS=Mus musculus |
Align length |
124 |
Score (bit) |
32.7 |
E-value |
1.3 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B4FIG2 |
Definition |
tr|B4FIG2|B4FIG2_MAIZE Putative uncharacterized protein OS=Zea mays |
Align length |
121 |
Score (bit) |
40.0 |
E-value |
0.089 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918214|Adiantum capillus-veneris mRNA, clone: YMU001_000110_H01. (565 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B4FIG2|B4FIG2_MAIZE Putative uncharacterized protein OS=Zea m... 40 0.089 tr|A4Y3V5|A4Y3V5_SHEPC Rhomboid family protein OS=Shewanella put... 37 0.75 tr|A1RN32|A1RN32_SHESW Rhomboid family protein OS=Shewanella sp.... 37 0.75 tr|A2UX26|A2UX26_SHEPU Rhomboid-like protein OS=Shewanella putre... 37 0.75 tr|A2BGD9|A2BGD9_DANRE Novel protein similar to human deafness, ... 36 1.7 tr|A4LPC5|A4LPC5_BURPS Putative uncharacterized protein OS=Burkh... 35 2.9 tr|Q3JM63|Q3JM63_BURP1 Peptide synthetase NRPS5-4-3 OS=Burkholde... 34 6.4 tr|A1VX26|A1VX26_POLNA Putative uncharacterized protein OS=Polar... 34 6.4 tr|B6PCB9|B6PCB9_BRAFL Putative uncharacterized protein (Fragmen... 34 6.4 tr|B6LC56|B6LC56_BRAFL Putative uncharacterized protein OS=Branc... 34 6.4 tr|Q63K54|Q63K54_BURPS Putative membrane protein OS=Burkholderia... 33 8.3 tr|Q4V2Q5|Q4V2Q5_BURMA Putative uncharacterized protein OS=Burkh... 33 8.3 tr|Q3JL47|Q3JL47_BURP1 Putative membrane protein OS=Burkholderia... 33 8.3 tr|A3P6W3|A3P6W3_BURP0 Putative uncharacterized protein OS=Burkh... 33 8.3 tr|A3MF35|A3MF35_BURM7 Putative uncharacterized protein OS=Burkh... 33 8.3 tr|A2RXX6|A2RXX6_BURM9 Putative uncharacterized protein OS=Burkh... 33 8.3 tr|A1UW74|A1UW74_BURMS Putative uncharacterized protein OS=Burkh... 33 8.3 tr|B7CYW2|B7CYW2_BURPS Putative uncharacterized protein OS=Burkh... 33 8.3 tr|B2HCI8|B2HCI8_BURPS Putative membrane protein OS=Burkholderia... 33 8.3 tr|B1H8J7|B1H8J7_BURPS Putative uncharacterized protein OS=Burkh... 33 8.3 tr|A9JZ20|A9JZ20_BURMA Putative uncharacterized protein OS=Burkh... 33 8.3 tr|A5TCV8|A5TCV8_BURMA Putative uncharacterized protein OS=Burkh... 33 8.3 tr|A5PM29|A5PM29_BURMA IcmF1 OS=Burkholderia mallei GN=icmF1 PE=... 33 8.3 tr|A5JD68|A5JD68_BURMA Putative uncharacterized protein OS=Burkh... 33 8.3 tr|Q7S322|Q7S322_NEUCR Predicted protein OS=Neurospora crassa GN... 33 8.3
>tr|B4FIG2|B4FIG2_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 293
Score = 40.0 bits (92), Expect = 0.089 Identities = 36/121 (29%), Positives = 46/121 (38%), Gaps = 11/121 (9%) Frame = -1
Query: 472 PTMSTKFKSSSTPNSPRLRACKKAPNGHHHGCCKELPFGRASPCKDHHRAVPL*MEADCA 293 PT++ F+ S P P + + HHHG L +G A DHH P + + Sbjct: 36 PTITFAFQQPSPPPPPTATSSLALAHPHHHGV---LGYGSACLLLDHHH--PTTATSSAS 90
Query: 292 PLHIDHQE----PFCAHIHWGH----PHVSEMHPIQDPARKLSCPMH---QASACTGRPH 146 P H P H GH PHVS + P R P H A+AC P Sbjct: 91 PSHAAPSSVVPAPTLHHHFHGHAAGAPHVS----LSPPTRASPPPHHPWSTAAACEEEPE 146
Query: 145 P 143 P Sbjct: 147 P 147
>tr|A4Y3V5|A4Y3V5_SHEPC Rhomboid family protein OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=Sputcn32_0909 PE=4 SV=1 Length = 523
Score = 37.0 bits (84), Expect = 0.75 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%) Frame = +2
Query: 56 HGSPFLLAWLLIVSQAALQDLSQIQTFHVWMRTSCTGRGLMH--WTGELTCWILYWMHL* 229 H +++ WLL+ + L +++ V + + + L H T EL W+ + Sbjct: 263 HKLAWIIGWLLVGALVWYVMLRRVKLDEVALNSGALAKQLDHRNTTSELQSWLEFIRPKA 322
Query: 230 DMWVSPVNMGAEGFLMIYMQWSAV-CLHLKGH 322 V+PV M F+ I+M WS+ +H + H Sbjct: 323 GFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSH 354
>tr|A1RN32|A1RN32_SHESW Rhomboid family protein OS=Shewanella sp. (strain W3-18-1) GN=Sputw3181_3263 PE=4 SV=1 Length = 523
Score = 37.0 bits (84), Expect = 0.75 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%) Frame = +2
Query: 56 HGSPFLLAWLLIVSQAALQDLSQIQTFHVWMRTSCTGRGLMH--WTGELTCWILYWMHL* 229 H +++ WLL+ + L +++ V + + + L H T EL W+ + Sbjct: 263 HKLAWIIGWLLVGALVWYVMLRRVKLDEVALNSGALAKQLDHRNTTSELQSWLEFIRPKA 322
Query: 230 DMWVSPVNMGAEGFLMIYMQWSAV-CLHLKGH 322 V+PV M F+ I+M WS+ +H + H Sbjct: 323 GFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSH 354
>tr|A2UX26|A2UX26_SHEPU Rhomboid-like protein OS=Shewanella putrefaciens 200 GN=Sput200DRAFT_3220 PE=4 SV=1 Length = 523
Score = 37.0 bits (84), Expect = 0.75 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%) Frame = +2
Query: 56 HGSPFLLAWLLIVSQAALQDLSQIQTFHVWMRTSCTGRGLMH--WTGELTCWILYWMHL* 229 H +++ WLL+ + L +++ V + + + L H T EL W+ + Sbjct: 263 HKLAWIIGWLLVGALVWYVMLRRVKLDEVALNSGALAKQLDHRNTTSELQSWLEFIRPKA 322
Query: 230 DMWVSPVNMGAEGFLMIYMQWSAV-CLHLKGH 322 V+PV M F+ I+M WS+ +H + H Sbjct: 323 GFMVTPVLMSLNAFVFIFMAWSSSHVIHFQSH 354
>tr|A2BGD9|A2BGD9_DANRE Novel protein similar to human deafness, autosomal recessive 31 (DFNB31) (Fragment) OS=Danio rerio GN=RP71-10D23.2-001 PE=4 SV=1 Length = 334
Score = 35.8 bits (81), Expect = 1.7 Identities = 25/84 (29%), Positives = 29/84 (34%) Frame = -1
Query: 391 HHHGCCKELPFGRASPCKDHHRAVPL*MEADCAPLHIDHQEPFCAHIHWGHPHVSEMHPI 212 H H C SPC HH +P I H P C+H H P S H Sbjct: 54 HSHLSCSS----HTSPCTIHHTT---------SPCSISHTPPPCSH-HHSSPRTSSYHSS 99
Query: 211 QDPARKLSCPMHQASACTGRPHPD 140 R L + A T PHP+ Sbjct: 100 PSSGRDLVQFLMNRQAGTLSPHPE 123
>tr|A4LPC5|A4LPC5_BURPS Putative uncharacterized protein OS=Burkholderia pseudomallei 305 GN=BURPS305_2104 PE=4 SV=1 Length = 1352
Score = 35.0 bits (79), Expect = 2.9 Identities = 30/93 (32%), Positives = 41/93 (44%) Frame = +1
Query: 145 DADVLYRQRLDALDRRAYVLDPVLDASLRHVGVPSEYGRRRVPDDLYAVERSLPPSKGAL 324 DAD + LD+LD R L VL A G P +P +L + +L A Sbjct: 274 DADAFVARALDSLDARLGALRVVLAAR----GEPPSPRALMLPHELACLRPALEAFARAA 329
Query: 325 LYDDLYREMPYQREALYSSRDDGRSALSYKPLT 423 ++Y+E PY R L++S GR A LT Sbjct: 330 FGPNVYQETPYLRGLLFAS---GRQAGGAPSLT 359
>tr|Q3JM63|Q3JM63_BURP1 Peptide synthetase NRPS5-4-3 OS=Burkholderia pseudomallei (strain 1710b) GN=blmVI PE=3 SV=1 Length = 1005
Score = 33.9 bits (76), Expect = 6.4 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = -1
Query: 487 PKKYGPTMSTKFKSSSTPNSPRLRA-CKKAPNGHHHGCCKELPFGRASPCKDHHRAVP 317 P + PT +S+ P +PR R+ C +A GCC P R+ P + RA+P Sbjct: 8 PSAHAPTSRNSARSAPRPPTPRRRSRCSRAAACSGGGCCSGTPTARSIPTR---RAMP 62
>tr|A1VX26|A1VX26_POLNA Putative uncharacterized protein OS=Polaromonas naphthalenivorans (strain CJ2) GN=Pnap_4795 PE=4 SV=1 Length = 1809
Score = 33.9 bits (76), Expect = 6.4 Identities = 22/35 (62%), Positives = 26/35 (74%) Frame = +1
Query: 115 LVSNPDISRLDADVLYRQRLDALDRRAYVLDPVLD 219 LVS DI RLDA+V R+R+DA DRRA +L VLD Sbjct: 1410 LVSRRDIYRLDAEV--RRRVDA-DRRAAILAAVLD 1441
>tr|B6PCB9|B6PCB9_BRAFL Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae GN=BRAFLDRAFT_247419 PE=4 SV=1 Length = 108
Score = 33.9 bits (76), Expect = 6.4 Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 12/76 (15%) Frame = -1
Query: 352 ASPCKDHHRAVPL*MEADCAPLHIDHQ------EPFCAHIHWGHPHVSEMHPIQ--DPAR 197 ASPC H P + C P+H H C IH HPH S PI P Sbjct: 11 ASPCNPIHPTHP--HASPCIPIHPTHSCTLHPHASLCIPIHPTHPHASPCIPIHPTHPYA 68
Query: 196 KLSCPMH----QASAC 161 L P+H AS C Sbjct: 69 SLCNPIHPTHPHASPC 84
>tr|B6LC56|B6LC56_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_68766 PE=4 SV=1 Length = 5358
Score = 33.9 bits (76), Expect = 6.4 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = +1
Query: 262 RRVPDDLYAVERSLPPSKGALLYDD-LYREMPYQREALYSSR 384 RR+P DLY VE + P G DD ++R + YQR Y R Sbjct: 3059 RRLPWDLYVVEHTYKPQAGLRQVDDGMFRSVEYQRPYQYLRR 3100
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