BP918218
Clone id YMU001_000110_H06
Library
Length 505
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000110_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ATAGAGCAATTACAAAGGACCTCTTCAGTTGTGCAAAAAACTTCCTGAAGTTCCAACTCT
TAGCATACAGAGTACCCCACAAACCTATTCAATTGCCTCATGTCCTTCGGTGAGAACTTT
TCACCTCATGAATCATAAGAAAATAACAGGGTTGAGGTAGGAATAGCCAGACATTCATAA
ACCCACCTATGCGCTGACCCTGTTATCTAAAGCTGAAGTGCAGGATTCATATCAAAGAGG
AAACTCATTTTCCTGCCTCTGCACACTTTTTGAAAGAAAGCAAAACTCCATTCTGGACAT
ACCATCGGAATCTTACCAAGATGCCCCTATTCTATTGGCACCCAACGCCTATACATTGAC
TCATCATGTGCATAGTGTCAAAACCTTATGTCATCTTGTTTCGAATCTGCCGGTGAACGT
GGACAAGGTACTCCACATACGAAAGACCCAAAGCATTCTTGTCCTCCACAAGAAGTGACC
AGAAAAGAAACTTCAACGGATCTCC
■■Homology search results ■■ -
sp_hit_id Q9M291
Definition sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana
Align length 39
Score (bit) 43.1
E-value 0.0007
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918218|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_H06.
(505 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF O... 43 7e-04
sp|P53992|SC24C_HUMAN Protein transport protein Sec24C OS=Homo s... 37 0.069
sp|Q66HC7|FA48A_RAT Protein FAM48A OS=Rattus norvegicus GN=Fam48... 33 0.58
sp|Q7TT00|FA48A_MOUSE Protein FAM48A OS=Mus musculus GN=Fam48a P... 33 0.58
sp|Q5R724|FA48A_PONAB Protein FAM48A OS=Pongo abelii GN=FAM48A P... 33 0.76
sp|Q8NEM7|FA48A_HUMAN Protein FAM48A OS=Homo sapiens GN=FAM48A P... 33 0.76
sp|O95487|SC24B_HUMAN Protein transport protein Sec24B OS=Homo s... 33 1.00
sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos ta... 33 1.00
sp|O95486|SC24A_HUMAN Protein transport protein Sec24A OS=Homo s... 32 1.3
sp|Q3U2P1|SC24A_MOUSE Protein transport protein Sec24A OS=Mus mu... 32 1.7
sp|Q5ZM71|FA48A_CHICK Protein FAM48A OS=Gallus gallus GN=FAM48A ... 31 3.8
sp|O88269|MRP6_RAT Multidrug resistance-associated protein 6 OS=... 30 4.9
sp|Q12527|ATG11_YEAST Autophagy-related protein 11 OS=Saccharomy... 30 6.5
sp|A6ZWU0|ATG11_YEAS7 Autophagy-related protein 11 OS=Saccharomy... 30 6.5
sp|Q32DE2|DNLJ_SHIDS DNA ligase OS=Shigella dysenteriae serotype... 30 8.4

>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF
OS=Arabidopsis thaliana GN=CEF PE=1 SV=2
Length = 1097

Score = 43.1 bits (100), Expect = 7e-04
Identities = 21/39 (53%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = -1

Query: 505 GDPL-KFLFWSLLVEDKNALGLSYVEYLVHVHRQIRNKM 392
GDP LF S +VED+ + G SYV++LV VHRQI++K+
Sbjct: 1058 GDPAGNMLFQSYMVEDRGSGGASYVDFLVSVHRQIQHKL 1096


>sp|P53992|SC24C_HUMAN Protein transport protein Sec24C OS=Homo
sapiens GN=SEC24C PE=1 SV=2
Length = 1094

Score = 36.6 bits (83), Expect = 0.069
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Frame = -1

Query: 502 DPLKFLFWSLLVEDKNALG-LSYVEYLVHVHRQIRNKMT 389
D ++ LF LVEDK+ G SYV++L H+H++IR ++
Sbjct: 1056 DKMEMLFKHFLVEDKSLSGGASYVDFLCHMHKEIRQLLS 1094


>sp|Q66HC7|FA48A_RAT Protein FAM48A OS=Rattus norvegicus GN=Fam48a
PE=2 SV=1
Length = 530

Score = 33.5 bits (75), Expect = 0.58
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2

Query: 182 PTYALTLLSKAEVQDSYQRGNSFSCLCTLFE-RKQNSILDIPSESYQDAPILLAPNAYTL 358
P + LL K++V N F C C + E R ++ S YQ ILL P TL
Sbjct: 121 PPILVDLLEKSQV-------NIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTL 173

Query: 359 THHVHSVKTLCH 394
VHS+ + H
Sbjct: 174 VCDVHSITSDNH 185


>sp|Q7TT00|FA48A_MOUSE Protein FAM48A OS=Mus musculus GN=Fam48a PE=1
SV=1
Length = 530

Score = 33.5 bits (75), Expect = 0.58
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2

Query: 182 PTYALTLLSKAEVQDSYQRGNSFSCLCTLFE-RKQNSILDIPSESYQDAPILLAPNAYTL 358
P + LL K++V N F C C + E R ++ S YQ ILL P TL
Sbjct: 121 PPILVDLLEKSQV-------NIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTL 173

Query: 359 THHVHSVKTLCH 394
VHS+ + H
Sbjct: 174 VCDVHSITSDNH 185


>sp|Q5R724|FA48A_PONAB Protein FAM48A OS=Pongo abelii GN=FAM48A PE=2
SV=1
Length = 522

Score = 33.1 bits (74), Expect = 0.76
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2

Query: 182 PTYALTLLSKAEVQDSYQRGNSFSCLCTLFE-RKQNSILDIPSESYQDAPILLAPNAYTL 358
P + LL K++V N F C C + E R ++ S YQ ILL P TL
Sbjct: 109 PPILVDLLEKSQV-------NIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTL 161

Query: 359 THHVHSVKTLCH 394
VHS+ + H
Sbjct: 162 ICDVHSITSDNH 173


>sp|Q8NEM7|FA48A_HUMAN Protein FAM48A OS=Homo sapiens GN=FAM48A PE=1
SV=1
Length = 779

Score = 33.1 bits (74), Expect = 0.76
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2

Query: 182 PTYALTLLSKAEVQDSYQRGNSFSCLCTLFE-RKQNSILDIPSESYQDAPILLAPNAYTL 358
P + LL K++V N F C C + E R ++ S YQ ILL P TL
Sbjct: 121 PPILVDLLEKSQV-------NIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTL 173

Query: 359 THHVHSVKTLCH 394
VHS+ + H
Sbjct: 174 ICDVHSITSDNH 185


>sp|O95487|SC24B_HUMAN Protein transport protein Sec24B OS=Homo
sapiens GN=SEC24B PE=1 SV=2
Length = 1268

Score = 32.7 bits (73), Expect = 1.00
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1

Query: 499 PLKFLFWSLLVEDKNALGLSYVEYLVHVHRQI 404
P K F+ L+ED+ SY E+L+HV +QI
Sbjct: 1235 PAKAEFFQHLIEDRTEAAFSYYEFLLHVQQQI 1266


>sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos taurus
GN=SEC24A PE=2 SV=1
Length = 1099

Score = 32.7 bits (73), Expect = 1.00
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1

Query: 499 PLKFLFWSLLVEDKNALGLSYVEYLVHVHRQI 404
P+K F +VED+ LSY E+L+H+ +Q+
Sbjct: 1066 PMKANFLQNMVEDRTESALSYYEFLLHIQQQV 1097


>sp|O95486|SC24A_HUMAN Protein transport protein Sec24A OS=Homo
sapiens GN=SEC24A PE=1 SV=2
Length = 1093

Score = 32.3 bits (72), Expect = 1.3
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -1

Query: 499 PLKFLFWSLLVEDKNALGLSYVEYLVHVHRQI 404
P+K F ++ED+ LSY E+L+H+ +Q+
Sbjct: 1060 PMKANFLQNMIEDRTESALSYYEFLLHIQQQV 1091


>sp|Q3U2P1|SC24A_MOUSE Protein transport protein Sec24A OS=Mus
musculus GN=Sec24a PE=1 SV=1
Length = 1090

Score = 32.0 bits (71), Expect = 1.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -1

Query: 496 LKFLFWSLLVEDKNALGLSYVEYLVHVHRQI 404
+K F LVED+ LSY E+L+H+ +Q+
Sbjct: 1058 MKAAFLQSLVEDRTESALSYYEFLLHIQQQV 1088


tr_hit_id A9S9N4
Definition tr|A9S9N4|A9S9N4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 39
Score (bit) 62.0
E-value 2.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918218|Adiantum capillus-veneris mRNA, clone:
YMU001_000110_H06.
(505 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9S9N4|A9S9N4_PHYPA Predicted protein OS=Physcomitrella paten... 62 2e-08
tr|A7P0Y5|A7P0Y5_VITVI Chromosome chr19 scaffold_4, whole genome... 56 1e-06
tr|Q2QSF9|Q2QSF9_ORYSJ Retrotransposon protein, putative, unclas... 55 1e-06
tr|Q0INL9|Q0INL9_ORYSJ Os12g0430000 protein OS=Oryza sativa subs... 55 1e-06
tr|B8BPD2|B8BPD2_ORYSI Putative uncharacterized protein OS=Oryza... 55 1e-06
tr|A3CGV8|A3CGV8_ORYSJ Putative uncharacterized protein OS=Oryza... 55 1e-06
tr|A9S9P0|A9S9P0_PHYPA Predicted protein OS=Physcomitrella paten... 54 6e-06
tr|B8BKI0|B8BKI0_ORYSI Putative uncharacterized protein OS=Oryza... 52 2e-05
tr|Q2R4A0|Q2R4A0_ORYSJ Protein transport protein Sec24-like CEF,... 51 4e-05
tr|Q0ISQ1|Q0ISQ1_ORYSJ Os11g0482100 protein (Fragment) OS=Oryza ... 51 4e-05
tr|B8BKH9|B8BKH9_ORYSI Putative uncharacterized protein OS=Oryza... 51 4e-05
tr|A3CBA1|A3CBA1_ORYSJ Putative uncharacterized protein OS=Oryza... 51 4e-05
tr|A4S4Y9|A4S4Y9_OSTLU Predicted protein OS=Ostreococcus lucimar... 45 0.002
tr|Q00YP1|Q00YP1_OSTTA S24C_ARATH Protein transport protein Sec2... 45 0.003
tr|Q27GK4|Q27GK4_ARATH Uncharacterized protein At3g44340.1 OS=Ar... 43 0.008
tr|Q641I5|Q641I5_XENLA MGC80413 protein OS=Xenopus laevis GN=sec... 40 0.049
tr|Q5B8Q0|Q5B8Q0_EMENI Putative uncharacterized protein OS=Emeri... 40 0.083
tr|Q2UQE8|Q2UQE8_ASPOR Vesicle coat complex COPII OS=Aspergillus... 39 0.11
tr|Q0CPA0|Q0CPA0_ASPTN Putative uncharacterized protein OS=Asper... 39 0.11
tr|B8MZM3|B8MZM3_ASPFL Sec23/Sec24 family protein OS=Aspergillus... 39 0.11
tr|B8M772|B8M772_9EURO Sec23/Sec24 family protein OS=Talaromyces... 39 0.11
tr|A8Q267|A8Q267_MALGO Putative uncharacterized protein OS=Malas... 39 0.14
tr|A7F0N1|A7F0N1_SCLS1 Putative uncharacterized protein OS=Scler... 39 0.19
tr|A6SPR1|A6SPR1_BOTFB SEC24 related gene family OS=Botryotinia ... 39 0.19
tr|Q4WXJ2|Q4WXJ2_ASPFU Sec23/Sec24 family protein OS=Aspergillus... 38 0.24
tr|B6GYD7|B6GYD7_PENCH Pc12g15830 protein OS=Penicillium chrysog... 38 0.24
tr|B0XY32|B0XY32_ASPFC Sec23/Sec24 family protein OS=Aspergillus... 38 0.24
tr|A1D799|A1D799_NEOFI Sec23/Sec24 family protein OS=Neosartorya... 38 0.24
tr|A1CK66|A1CK66_ASPCL Sec23/Sec24 family protein OS=Aspergillus... 38 0.24
tr|Q4PBY5|Q4PBY5_USTMA Putative uncharacterized protein OS=Ustil... 38 0.32

>tr|A9S9N4|A9S9N4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_76562 PE=4 SV=1
Length = 1007

Score = 62.0 bits (149), Expect = 2e-08
Identities = 28/39 (71%), Positives = 34/39 (87%)
Frame = -1

Query: 505 GDPLKFLFWSLLVEDKNALGLSYVEYLVHVHRQIRNKMT 389
GDP + LF++ LVEDK+ALGLSYVEYLV HRQI+N+MT
Sbjct: 969 GDPRELLFYNYLVEDKSALGLSYVEYLVQTHRQIQNRMT 1007


>tr|A7P0Y5|A7P0Y5_VITVI Chromosome chr19 scaffold_4, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00027411001
PE=4 SV=1
Length = 77

Score = 55.8 bits (133), Expect = 1e-06
Identities = 25/39 (64%), Positives = 32/39 (82%)
Frame = -1

Query: 505 GDPLKFLFWSLLVEDKNALGLSYVEYLVHVHRQIRNKMT 389
GD LF+S +VEDK A+GLSYVE+LVH+HRQI+ KM+
Sbjct: 39 GDASGMLFFSFMVEDKTAIGLSYVEFLVHIHRQIQIKMS 77


>tr|Q2QSF9|Q2QSF9_ORYSJ Retrotransposon protein, putative,
unclassified, expressed OS=Oryza sativa subsp. japonica
GN=LOC_Os12g24250 PE=4 SV=1
Length = 1083

Score = 55.5 bits (132), Expect = 1e-06
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = -1

Query: 505 GDPLKFLFWSLLVEDKNALGLSYVEYLVHVHRQIRNKMT 389
GDP F SLLVEDK GLSYVE+LVHVHRQI++KMT
Sbjct: 1045 GDPSGDFFRSLLVEDKAPGGLSYVEFLVHVHRQIQSKMT 1083


>tr|Q0INL9|Q0INL9_ORYSJ Os12g0430000 protein OS=Oryza sativa subsp.
japonica GN=Os12g0430000 PE=4 SV=1
Length = 867

Score = 55.5 bits (132), Expect = 1e-06
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = -1

Query: 505 GDPLKFLFWSLLVEDKNALGLSYVEYLVHVHRQIRNKMT 389
GDP F SLLVEDK GLSYVE+LVHVHRQI++KMT
Sbjct: 829 GDPSGDFFRSLLVEDKAPGGLSYVEFLVHVHRQIQSKMT 867


>tr|B8BPD2|B8BPD2_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_38153 PE=4 SV=1
Length = 1094

Score = 55.5 bits (132), Expect = 1e-06
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = -1

Query: 505 GDPLKFLFWSLLVEDKNALGLSYVEYLVHVHRQIRNKMT 389
GDP F SLLVEDK GLSYVE+LVHVHRQI++KMT
Sbjct: 1056 GDPSGDFFRSLLVEDKAPGGLSYVEFLVHVHRQIQSKMT 1094


>tr|A3CGV8|A3CGV8_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_034530 PE=4 SV=1
Length = 1056

Score = 55.5 bits (132), Expect = 1e-06
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = -1

Query: 505 GDPLKFLFWSLLVEDKNALGLSYVEYLVHVHRQIRNKMT 389
GDP F SLLVEDK GLSYVE+LVHVHRQI++KMT
Sbjct: 1018 GDPSGDFFRSLLVEDKAPGGLSYVEFLVHVHRQIQSKMT 1056


>tr|A9S9P0|A9S9P0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_126303 PE=4 SV=1
Length = 1044

Score = 53.5 bits (127), Expect = 6e-06
Identities = 28/42 (66%), Positives = 31/42 (73%), Gaps = 3/42 (7%)
Frame = -1

Query: 505 GDPLK---FLFWSLLVEDKNALGLSYVEYLVHVHRQIRNKMT 389
GDP LF + LVEDK ALGLSYVEYLV HRQI+N+MT
Sbjct: 1003 GDPRGTTFLLFQNYLVEDKTALGLSYVEYLVQTHRQIQNRMT 1044


>tr|B8BKI0|B8BKI0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_36108 PE=4 SV=1
Length = 784

Score = 52.0 bits (123), Expect = 2e-05
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = -1

Query: 505 GDPLKFLFWSLLVEDKNALGLSYVEYLVHVHRQIRNKMT 389
G+P F S L+EDK GLSYVE+LVHVHRQI++KMT
Sbjct: 746 GEPSGDFFRSFLIEDKAPGGLSYVEFLVHVHRQIQSKMT 784


>tr|Q2R4A0|Q2R4A0_ORYSJ Protein transport protein Sec24-like CEF,
putative, expressed OS=Oryza sativa subsp. japonica
GN=LOC_Os11g29200 PE=4 SV=1
Length = 810

Score = 50.8 bits (120), Expect = 4e-05
Identities = 25/39 (64%), Positives = 29/39 (74%)
Frame = -1

Query: 505 GDPLKFLFWSLLVEDKNALGLSYVEYLVHVHRQIRNKMT 389
G+P F S L EDK GLSYVE+LVHVHRQI++KMT
Sbjct: 772 GEPSGDFFRSFLTEDKAPGGLSYVEFLVHVHRQIQSKMT 810


>tr|Q0ISQ1|Q0ISQ1_ORYSJ Os11g0482100 protein (Fragment) OS=Oryza
sativa subsp. japonica GN=Os11g0482100 PE=4 SV=1
Length = 577

Score = 50.8 bits (120), Expect = 4e-05
Identities = 25/39 (64%), Positives = 29/39 (74%)
Frame = -1

Query: 505 GDPLKFLFWSLLVEDKNALGLSYVEYLVHVHRQIRNKMT 389
G+P F S L EDK GLSYVE+LVHVHRQI++KMT
Sbjct: 539 GEPSGDFFRSFLTEDKAPGGLSYVEFLVHVHRQIQSKMT 577