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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918239
Clone id YMU001_000111_B06
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000111_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGTTCGCGGCCGAGATTTGTCTTACAATAGCGGACCCACAGAGCTTCAAGATCCACACA
TAACTTACACATCATAGATCCCATTGCACCTTCTCTATGATTCATAAGGGTAAACCTCCG
ACACTGCAACAAAACTAGAGCTAAAACGATAGTTCCTATTCACGCAAAAACCAAACTAGA
GCTAAAACGATAGTTCCTATTTAGCGCAAACAATGATAGTCAATGGCATAAACAGTACGA
CCTTGAGATCTACGACTTTGGACTTGTTTCAGTCAAAGCTTTTGGGAAGGGGCAGAATGC
TTAAGCTCAATCCCTAGAATTAATTTAGCAGAAACTGAAACACCACAAAATCCAAATGAA
AACACGTTCTTACTCCAGAGCCCTGGAGGGACACAGCAAACAAGCAGAACAAAATGCCAA
ATGAAAAGATATACATGGCAACGATCAGATTATTTGGGAGCTAATAGCGAAAGTATACAA
CCATCAATCCAAAAAACTGCAGCTCATGGGCTAGAACTTAACAGTGAGGAGATA
■■Homology search results ■■ -
sp_hit_id Q6RHR6
Definition sp|Q6RHR6|DMI1_MEDTR Putative ion channel DMI-1 OS=Medicago truncatula
Align length 56
Score (bit) 35.4
E-value 0.16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918239|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_B06.
         (519 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6RHR6|DMI1_MEDTR Putative ion channel DMI-1 OS=Medicago trun...    35   0.16 
sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3 OS=Arabidops...    33   0.61 
sp|P73930|FTSY_SYNY3 Cell division protein ftsY homolog OS=Synec...    30   5.3  
sp|Q54Y20|SYA_DICDI Alanyl-tRNA synthetase OS=Dictyostelium disc...    30   6.9  

>sp|Q6RHR6|DMI1_MEDTR Putative ion channel DMI-1 OS=Medicago
           truncatula GN=DMI1 PE=2 SV=1
          Length = 882

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +1

Query: 292 SIPRINLAETETPQNPNENTFLLQSPGGTQQTSRTKCQMKRYTWQRSDYLGANSES 459
           ++P +NL  + TP NPN+N        G   TS TK       W    +LG  S S
Sbjct: 24  TLPSLNLRVSVTPPNPNDN-------NGIGGTSTTKTDFSEQQWNYPSFLGIGSTS 72


>sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3 OS=Arabidopsis
           thaliana GN=SDN3 PE=1 SV=1
          Length = 782

 Score = 33.5 bits (75), Expect = 0.61
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
 Frame = +2

Query: 314 QKLKHHKIQMKTRSYSRALEGHSKQAEQ-----NAK*KDIHGNDQIIWELIAKVYNHQSK 478
           ++++  K ++K   ++ + EGHSK+ E+     NAK   I   D+II  L  K+   QSK
Sbjct: 720 KEMEELKEKLKAMEFAISCEGHSKEIEELKQKLNAKEHQIQAQDKIIANLKMKLEKKQSK 779


>sp|P73930|FTSY_SYNY3 Cell division protein ftsY homolog
           OS=Synechocystis sp. (strain PCC 6803) GN=ftsY PE=3 SV=1
          Length = 504

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
 Frame = +1

Query: 271 EGAECLSSI-PRINLAETETPQNPNENTFLLQSPGGTQQTSRTKCQMKRYTWQRSDY--- 438
           EGAE    + P +  AETE+P   +  T  L +P   + +S T        W ++ Y   
Sbjct: 22  EGAEVSPELAPEVIQAETESPSEEDSQTTELAAPPPEEPSSDTANPDDYLQWAKAAYQNI 81

Query: 439 LGANSESIQP---SIQKTAAHGLELNSEEI 519
               +E++ P   +   T   G+E  +EEI
Sbjct: 82  QARKAETVSPPESAAAITVEAGIEETAEEI 111


>sp|Q54Y20|SYA_DICDI Alanyl-tRNA synthetase OS=Dictyostelium
           discoideum GN=alaS PE=2 SV=1
          Length = 946

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 22/64 (34%), Positives = 29/64 (45%)
 Frame = +1

Query: 322 ETPQNPNENTFLLQSPGGTQQTSRTKCQMKRYTWQRSDYLGANSESIQPSIQKTAAHGLE 501
           E P NP    + ++  GGT   S TK Q + +T    + LGA    I       AA  +E
Sbjct: 695 ENPTNPEWANYSIEFCGGTH-LSNTK-QAELFTITSEETLGAGVRRIVAVTGSEAASAIE 752

Query: 502 LNSE 513
           LN E
Sbjct: 753 LNKE 756
tr_hit_id Q1SKV5
Definition tr|Q1SKV5|Q1SKV5_MEDTR Ion channel DMI-1 , putative OS=Medicago truncatula
Align length 56
Score (bit) 35.4
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918239|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_B06.
         (519 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1SKV5|Q1SKV5_MEDTR Ion channel DMI-1 , putative OS=Medicago ...    35   1.7  
tr|A9DNQ6|A9DNQ6_9FABA DMI1 protein (Fragment) OS=Medicago torna...    35   1.7  
tr|A9DN52|A9DN52_MEDTR DMI1 protein (Fragment) OS=Medicago trunc...    35   1.7  
tr|A9DN39|A9DN39_MEDTR DMI1 protein (Fragment) OS=Medicago trunc...    35   1.7  
tr|A9DMX9|A9DMX9_MEDTR DMI1 protein (Fragment) OS=Medicago trunc...    35   1.7  
tr|A3U8D6|A3U8D6_9FLAO Putative DNA mismatch repair protein OS=C...    34   5.0  

>tr|Q1SKV5|Q1SKV5_MEDTR Ion channel DMI-1 , putative OS=Medicago
           truncatula GN=MtrDRAFT_AC140550g28v2 PE=4 SV=1
          Length = 882

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +1

Query: 292 SIPRINLAETETPQNPNENTFLLQSPGGTQQTSRTKCQMKRYTWQRSDYLGANSES 459
           ++P +NL  + TP NPN+N        G   TS TK       W    +LG  S S
Sbjct: 24  TLPSLNLRVSVTPPNPNDN-------NGIGGTSTTKTDFSEQQWNYPSFLGIGSTS 72


>tr|A9DNQ6|A9DNQ6_9FABA DMI1 protein (Fragment) OS=Medicago tornata
           GN=DMI1 PE=4 SV=1
          Length = 227

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +1

Query: 292 SIPRINLAETETPQNPNENTFLLQSPGGTQQTSRTKCQMKRYTWQRSDYLGANSES 459
           ++P +NL  + TP NPN+N        G   TS TK       W    +LG  S S
Sbjct: 24  TLPSLNLRVSVTPPNPNDN-------NGIGGTSTTKTDFSEQQWNYPSFLGIGSTS 72


>tr|A9DN52|A9DN52_MEDTR DMI1 protein (Fragment) OS=Medicago
           truncatula var. truncatula GN=DMI1 PE=4 SV=1
          Length = 222

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +1

Query: 292 SIPRINLAETETPQNPNENTFLLQSPGGTQQTSRTKCQMKRYTWQRSDYLGANSES 459
           ++P +NL  + TP NPN+N        G   TS TK       W    +LG  S S
Sbjct: 19  TLPSLNLRVSVTPPNPNDN-------NGIGGTSTTKTDFSEQQWNYPSFLGIGSTS 67


>tr|A9DN39|A9DN39_MEDTR DMI1 protein (Fragment) OS=Medicago
           truncatula var. truncatula GN=DMI1 PE=4 SV=1
          Length = 227

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +1

Query: 292 SIPRINLAETETPQNPNENTFLLQSPGGTQQTSRTKCQMKRYTWQRSDYLGANSES 459
           ++P +NL  + TP NPN+N        G   TS TK       W    +LG  S S
Sbjct: 24  TLPSLNLRVSVTPPNPNDN-------NGIGGTSTTKTDFSEQQWNYPSFLGIGSTS 72


>tr|A9DMX9|A9DMX9_MEDTR DMI1 protein (Fragment) OS=Medicago
           truncatula var. truncatula GN=DMI1 PE=4 SV=1
          Length = 227

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +1

Query: 292 SIPRINLAETETPQNPNENTFLLQSPGGTQQTSRTKCQMKRYTWQRSDYLGANSES 459
           ++P +NL  + TP NPN+N        G   TS TK       W    +LG  S S
Sbjct: 24  TLPSLNLRVSVTPPNPNDN-------NGIGGTSTTKTDFSEQQWNYPSFLGIGSTS 72


>tr|A3U8D6|A3U8D6_9FLAO Putative DNA mismatch repair protein
           OS=Croceibacter atlanticus HTCC2559 GN=CA2559_07070 PE=4
           SV=1
          Length = 617

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 24/76 (31%), Positives = 40/76 (52%)
 Frame = +1

Query: 292 SIPRINLAETETPQNPNENTFLLQSPGGTQQTSRTKCQMKRYTWQRSDYLGANSESIQPS 471
           SIP+I++       + N N F    P    + SR   Q    +W+ S Y+GAN+E+I+ +
Sbjct: 355 SIPKIDV-------DRNFNPFQDSQPATASKQSRNFQQKPTQSWE-SLYVGANTEAIEDN 406

Query: 472 IQKTAAHGLELNSEEI 519
            Q +A   +E  S+E+
Sbjct: 407 FQTSA---IEFESDEV 419