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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918246
Clone id YMU001_000111_C02
Library
Length 543
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000111_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATGTTATTATCGAAACAATCATAAGGATGTCTAGCAAAGGTCCATACTGGTTTTGCCTAC
CATCAAGGTTGTCTTGTCCAGTGTTGACATCCTGGAGCGTCTTCTCTTGTTCTTTTGCTA
TTCGAGACTCTTGTGTCTCCAATGTAGAGGGCTCCATTGCACGTGAATTTTCTTCTAATG
TACTATGATCTGTTTGTGTGTCAGGCATAAGCTCAACAGGTGGAGGTGTGGTAGAGGTAT
ACTCTACTTAAGGGTTAGAGAGCTCTTTCTCAGCCCCTCCCGTCTGCATAAACTTCATCC
TTTGGAAACCCTCCAAGCACAGAGGGAGTTTCTACATTTATTTCTTCGTCAGCCCCTCGA
TCTTTGTGATCTTGCTCCTATGTGGGCTTCCCCTCACTTTTCTCCTTGTCAAACTCTCCT
TCTGTAGCATTTCTATTCTTAGAAGTCCCTCCCTCCTCTTGCTCCTGTCCTTTCTCAGCT
GCCCTTATGGAATTTGTTTGCTGCAGTCCATCAGCAGTCATCACTCTACAATGTGATCAT
CCA
■■Homology search results ■■ -
sp_hit_id P0C656
Definition sp|P0C656|MED12_CAEBR Mediator of RNA polymerase II transcription subunit 12 OS=Caenorhabditis briggsae
Align length 71
Score (bit) 33.9
E-value 0.53
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918246|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_C02.
         (543 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C656|MED12_CAEBR Mediator of RNA polymerase II transcriptio...    34   0.53 
sp|Q55GG4|Y9847_DICDI Probable serine/threonine-protein kinase D...    32   2.0  
sp|A1JIV3|RL21_YERE8 50S ribosomal protein L21 OS=Yersinia enter...    32   2.0  
sp|A6NMS7|L37A1_HUMAN Leucine-rich repeat-containing protein 37A...    32   2.0  
sp|P38753|HSE1_YEAST Class E vacuolar protein-sorting machinery ...    32   2.0  
sp|A6NM11|L37A2_HUMAN Leucine-rich repeat-containing protein 37A...    32   2.6  
sp|Q6NXA9|UBXN1_DANRE UBX domain-containing protein 1 OS=Danio r...    31   3.4  
sp|Q54GW3|CC124_DICDI Coiled-coil domain-containing protein 124 ...    30   5.8  
sp|Q55CW2|SAMKC_DICDI Probable serine/threonine-protein kinase s...    30   7.6  
sp|Q2UDY8|PAN1_ASPOR Actin cytoskeleton-regulatory complex prote...    30   7.6  
sp|P10667|MUA1_XENLA Integumentary mucin A.1 OS=Xenopus laevis P...    30   7.6  
sp|Q13105|ZBT17_HUMAN Zinc finger and BTB domain-containing prot...    30   9.9  
sp|P26043|RADI_MOUSE Radixin OS=Mus musculus GN=Rdx PE=1 SV=2          30   9.9  

>sp|P0C656|MED12_CAEBR Mediator of RNA polymerase II transcription
           subunit 12 OS=Caenorhabditis briggsae GN=dpy-22 PE=3
           SV=1
          Length = 3941

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
 Frame = -3

Query: 277 GAEKELSNP*VEYTSTTPPPVEL--------MPDT---QTDHSTLEENSRAMEPSTLETQ 131
           G E + SNP        PPPVE          PDT     D  + E   +A E ST +  
Sbjct: 740 GDEMDFSNPTPPEAPPPPPPVEFETSPSASPAPDTDKEDEDGKSKEGGDKAAEKSTDKPA 799

Query: 130 ESRIAKEQEKT 98
           E + A E+EKT
Sbjct: 800 EEKEASEKEKT 810


>sp|Q55GG4|Y9847_DICDI Probable serine/threonine-protein kinase
            DDB_G0267686 OS=Dictyostelium discoideum GN=DDB_G0267686
            PE=3 SV=1
          Length = 2230

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -3

Query: 211  LMPDTQTDHSTLEENSRAMEPSTLETQESRIAKEQEKTLQDVNTGQDNLDGRQNQ 47
            L+P+T  + S +   S A+ PSTL  Q+ +I ++Q++  Q     Q     +Q Q
Sbjct: 1449 LLPNTLLNLSNVTMASGALSPSTLNQQQHQILQQQQQQQQQQQQQQQQQQQQQQQ 1503


>sp|A1JIV3|RL21_YERE8 50S ribosomal protein L21 OS=Yersinia
           enterocolitica serotype O:8 / biotype 1B (strain 8081)
           GN=rplU PE=3 SV=1
          Length = 103

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = -2

Query: 347 EEINVETPSVLGGFPKDEVYADGRG 273
           EEIN+  P V+GG  K EV A GRG
Sbjct: 45  EEINIGAPLVVGGVVKAEVVAHGRG 69


>sp|A6NMS7|L37A1_HUMAN Leucine-rich repeat-containing protein 37A
           OS=Homo sapiens GN=LRRC37A PE=2 SV=2
          Length = 1700

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -3

Query: 256 NP*VEYTSTTPPPVELM----PDTQTDHSTLEENSRAMEPSTLET 134
           +P  E TST PP + L     P T+T HST  E + A  P  ++T
Sbjct: 738 SPTTEETSTQPPDLGLAIIPEPTTETGHSTALEKTTAPRPDRVQT 782


>sp|P38753|HSE1_YEAST Class E vacuolar protein-sorting machinery
           protein HSE1 OS=Saccharomyces cerevisiae GN=HSE1 PE=1
           SV=1
          Length = 452

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -3

Query: 199 TQTDHSTLEENSRAMEPSTLETQESRIAKEQEKTLQDVNTGQDNLDGRQNQ 47
           TQ D+S  EE  +A++ S  E ++ +  +EQEK   +V   Q     +QNQ
Sbjct: 157 TQADNSDDEELQKALKMSLFEYEKQKKLQEQEKESAEVLPQQQQQHQQQNQ 207


>sp|A6NM11|L37A2_HUMAN Leucine-rich repeat-containing protein 37A2
           OS=Homo sapiens GN=LRRC37A2 PE=2 SV=2
          Length = 1700

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -3

Query: 256 NP*VEYTSTTPPPVELM----PDTQTDHSTLEENSRAMEPSTLET 134
           +P  E TST PP + L     P T+T HST  E + A  P  ++T
Sbjct: 738 SPTTEETSTQPPDLGLAIIPEPTTETRHSTALEKTTAPRPDRVQT 782


>sp|Q6NXA9|UBXN1_DANRE UBX domain-containing protein 1 OS=Danio
           rerio GN=ubxn1 PE=2 SV=1
          Length = 294

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 24/115 (20%), Positives = 50/115 (43%)
 Frame = -3

Query: 478 LRKDRSKRREGLLRIEMLQKESLTRRKVRGSPHRSKITKIEGLTKK*M*KLPLCLEGFQR 299
           + +++ +R++G   +++ QK      K      R +  K+E    K   K  +  +  +R
Sbjct: 121 IEREKQRRKQGQELLQVRQKLQEDEMKKLADQRRKE--KMEDRLAKQRVKDKIARDREER 178

Query: 298 MKFMQTGGAEKELSNP*VEYTSTTPPPVELMPDTQTDHSTLEENSRAMEPSTLET 134
            +    G +   LS+P  E  + +PP  +  P  + D+       R ++ +TL T
Sbjct: 179 AQKFGGGSSSTGLSSPPAEAPALSPPENQGAPPAKKDYDDCRIQVRLLDGTTLST 233


>sp|Q54GW3|CC124_DICDI Coiled-coil domain-containing protein 124
           homolog OS=Dictyostelium discoideum GN=DDB_G0289893 PE=3
           SV=1
          Length = 247

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 4/144 (2%)
 Frame = -3

Query: 475 RKDRSKRREGLLRIEMLQKESLTRRKVRGSPHRSKITKIEGLTKK*M*KLPLCLEGFQRM 296
           R+D  K++E     E+LQ+E    ++  G P  +K+T+ E                 Q+ 
Sbjct: 61  REDAKKKQEAK---ELLQQEDKEIKERYGKPSDTKVTRFE----------------IQQK 101

Query: 295 KFMQTGGAEKEL----SNP*VEYTSTTPPPVELMPDTQTDHSTLEENSRAMEPSTLETQE 128
           +  +    EKEL    S+P V    TT         T T     EE     E   LE   
Sbjct: 102 RDKEQKQREKELASRPSDPRVVVVPTTTTTTTTTTTTTTGSDDHEE-----EDFNLEENM 156

Query: 127 SRIAKEQEKTLQDVNTGQDNLDGR 56
           + I +EQ      +  G+D +D R
Sbjct: 157 NHILREQR-----LKDGKDVIDAR 175


>sp|Q55CW2|SAMKC_DICDI Probable serine/threonine-protein kinase
           samkC OS=Dictyostelium discoideum GN=samkC PE=3 SV=2
          Length = 875

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 235 STTPPPVELMPDTQTDHSTLEENS--RAMEPSTLETQESRIAKEQ 107
           S+ PPP+E  P  QT  S  + +S   + EP  LE Q ++ +K Q
Sbjct: 553 SSEPPPLEPQPKPQTSQSKPKPSSSLSSSEPPPLEPQPTQSSKPQ 597


>sp|Q2UDY8|PAN1_ASPOR Actin cytoskeleton-regulatory complex protein
            pan1 OS=Aspergillus oryzae GN=pan1 PE=3 SV=1
          Length = 1473

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = -3

Query: 304  QRMKFMQTGGAEKELSNP*VEYTSTTPPPVELMPDTQTDHSTLEENSRAMEPSTLETQES 125
            QR    + GG+  + + P     S  PPP       +TD +   E  RA E S +  Q +
Sbjct: 1000 QRRLAEEQGGSMAQPAKP----ASKKPPPAPPSRRGRTDSAGQAEAKRAAEESAIVEQAA 1055

Query: 124  R--IAKEQEKTLQDVNTGQDNLDGRQNQY 44
            R    +E+E+  Q+    +D+   R+ ++
Sbjct: 1056 REQTIREEEEAQQERKRLEDDARKREEEF 1084
tr_hit_id A9A3G2
Definition tr|A9A3G2|A9A3G2_NITMS Putative uncharacterized protein OS=Nitrosopumilus maritimus (strain SCM1)
Align length 74
Score (bit) 39.3
E-value 0.14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918246|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_C02.
         (543 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9A3G2|A9A3G2_NITMS Putative uncharacterized protein OS=Nitro...    39   0.14 
tr|Q4RJL0|Q4RJL0_TETNG Chromosome 3 SCAF15037, whole genome shot...    36   1.1  
tr|Q2M143|Q2M143_DROPS GA21178 OS=Drosophila pseudoobscura pseud...    32   2.0  
tr|Q55EQ3|Q55EQ3_DICDI Alpha/beta hydrolase fold-1 domain-contai...    34   4.4  
tr|A5KBE6|A5KBE6_PLAVI Putative uncharacterized protein OS=Plasm...    34   4.4  
tr|A7RFQ1|A7RFQ1_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   5.7  
tr|A4R7H1|A4R7H1_MAGGR Putative uncharacterized protein OS=Magna...    34   5.7  
tr|A2DX47|A2DX47_TRIVA Putative uncharacterized protein OS=Trich...    33   7.4  
tr|Q0UXT9|Q0UXT9_PHANO Putative uncharacterized protein OS=Phaeo...    33   7.4  
tr|Q177T5|Q177T5_AEDAE Huntingtin interacting protein OS=Aedes a...    33   9.7  
tr|A2EEF0|A2EEF0_TRIVA Putative uncharacterized protein OS=Trich...    33   9.7  
tr|A0BRS1|A0BRS1_PARTE Chromosome undetermined scaffold_123, who...    33   9.7  
tr|A7F268|A7F268_SCLS1 Putative uncharacterized protein OS=Scler...    33   9.7  

>tr|A9A3G2|A9A3G2_NITMS Putative uncharacterized protein
           OS=Nitrosopumilus maritimus (strain SCM1) GN=Nmar_0998
           PE=4 SV=1
          Length = 513

 Score = 39.3 bits (90), Expect = 0.14
 Identities = 26/74 (35%), Positives = 34/74 (45%)
 Frame = -3

Query: 265 ELSNP*VEYTSTTPPPVELMPDTQTDHSTLEENSRAMEPSTLETQESRIAKEQEKTLQDV 86
           E S P  E ++ T P     P T T+ ST  E S   EPST     + + K Q+K L  +
Sbjct: 303 EPSTP-TEPSTPTEPSTPTEPSTPTEPSTPTEPSTPTEPSTPTEPSTPLTKAQKKALNQL 361

Query: 85  NTGQDNLDGRQNQY 44
           N    N   R+ QY
Sbjct: 362 NNAIKNEQKREVQY 375


>tr|Q4RJL0|Q4RJL0_TETNG Chromosome 3 SCAF15037, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00033388001 PE=3 SV=1
          Length = 1604

 Score = 36.2 bits (82), Expect = 1.1
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -3

Query: 205 PDTQTDHSTLEENSRAMEPSTLETQESRIAKEQEKTLQDVNTGQDNLDGRQ 53
           P+ QTD + L +    MEP +L T+  R  +E  +  Q V  G  +LD  Q
Sbjct: 450 PEKQTDRTHLGQKQVTMEPQSLSTRRERYEREFPEYKQPVEVGSFSLDSEQ 500


>tr|Q2M143|Q2M143_DROPS GA21178 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA21178 PE=4 SV=2
          Length = 495

 Score = 32.0 bits (71), Expect(2) = 2.0
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -3

Query: 289 MQTGGAEKELSNP*VEYTSTTPPPVELMPDTQTDHSTLEENSRAMEPSTLETQES-RIAK 113
           ++T  AEKE  NP      + P  VE   D + +    EE  +   P T+ET+E+ +  +
Sbjct: 382 VETEEAEKETENPEETPKESAPETVET-EDAKKETENPEETPKESAPETVETEEAEKETE 440

Query: 112 EQEKT 98
            QE+T
Sbjct: 441 NQEET 445



 Score = 22.3 bits (46), Expect(2) = 2.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 422 EGEFDKEKSEGKPT*EQDHKDRGADEE 342
           + E +KE+ E KP  E++      DEE
Sbjct: 318 QDEAEKEEKEAKPKIEKEEGKTDDDEE 344


>tr|Q55EQ3|Q55EQ3_DICDI Alpha/beta hydrolase fold-1
           domain-containing protein OS=Dictyostelium discoideum
           GN=DDB_0252556 PE=4 SV=2
          Length = 937

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
 Frame = -3

Query: 265 ELSNP*VEYTSTTPPPVELMPDTQTDHSTLEENSRAMEPSTLETQES-RIAKE-QEKTLQ 92
           E S P VE +   P   +     + +    EE +  +E   LE +E+ R+AKE +EK ++
Sbjct: 330 EESKPVVEESKPEPVVDDSKEKEEKERLEKEEAAAKLEKERLEKEEAERVAKEAEEKRIK 389

Query: 91  DVNTGQDNLDGRQNQ 47
           D    Q+NL+ +Q +
Sbjct: 390 DEKEAQENLEKQQQE 404


>tr|A5KBE6|A5KBE6_PLAVI Putative uncharacterized protein
           OS=Plasmodium vivax GN=PVX_119775 PE=4 SV=1
          Length = 648

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -3

Query: 280 GGAEKELSNP*VEYTSTTPPPVELMPDTQTDHSTLEENS-RAMEPSTLETQESRIAKEQE 104
           GG E E   P         P      D Q + ST+++N+   + P   +T+ES  A   E
Sbjct: 570 GGNEAEEGTPQGNQAEEGTPQ-----DNQAEESTMKDNTIEQITPQNDQTEESTSADSVE 624

Query: 103 KTLQDVNTGQDNLDGRQNQ 47
           K       GQDN+ G  N+
Sbjct: 625 KVAAAPPGGQDNIAGASNE 643


>tr|A7RFQ1|A7RFQ1_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g35477 PE=4 SV=1
          Length = 304

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +2

Query: 266 FLSPSRLHKLHPLETLQAQREFLHLFLRQPLDLCDLAPMWASPHFSPCQTLLL*H-FYS* 442
           +L+PS +H L+PL  +      L +    P  L  + P++      P   LL  H  YS 
Sbjct: 158 YLTPSTIHPLYPLLVIHPLYPLLVIHPLYP--LLAIHPLYPLLVIHPLYPLLAIHPLYSL 215

Query: 443 KSLPPLAPVLSQLPLWNLFA 502
            ++ PL P+L+  PL++L A
Sbjct: 216 LAIHPLYPLLAIHPLYSLLA 235


>tr|A4R7H1|A4R7H1_MAGGR Putative uncharacterized protein
            OS=Magnaporthe grisea GN=MGG_03252 PE=4 SV=1
          Length = 4031

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
 Frame = -3

Query: 277  GAEKELSNP*VEY----TSTTPPPVELMPDTQTDHSTLEENSRAMEPSTLETQESRIAKE 110
            GAE+E   P        T T PPP E+    QT  +     S+  + ST+   +  +   
Sbjct: 3322 GAEEEAKKPSQTEGSTSTDTAPPPTEVASGAQTSGTA---PSQTNDNSTVADTQDDLKLN 3378

Query: 109  QEKTLQDVNTGQDNLDGRQNQYGPLLDILMIVSI 8
            +E + QD  T        Q    P+ ++ ++V+I
Sbjct: 3379 EESSTQDAKTADKKSKSFQPPVVPVYNLTLVVNI 3412


>tr|A2DX47|A2DX47_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_019750 PE=4 SV=1
          Length = 340

 Score = 33.5 bits (75), Expect = 7.4
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -3

Query: 175 EENSRAMEPST-LETQESRIAKEQEKTLQDVNTGQDNLDGRQNQYGPL 35
           +ENSR +E +  LET+ + +  E ++   ++N+G  N   +Q++ GPL
Sbjct: 244 QENSRLLEANRRLETERNFLMNENQELRAEINSGCCNSSSKQSKQGPL 291


>tr|Q0UXT9|Q0UXT9_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_03425 PE=4 SV=1
          Length = 184

 Score = 33.5 bits (75), Expect = 7.4
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -3

Query: 232 TTPPPVELMPDTQTDHSTLEENSRAMEPSTLETQESRIAKEQEKTLQDVNTGQDN 68
           TTP  ++  P   T+H+  + +     P+  E Q   I ++  K + DV+ G D+
Sbjct: 95  TTPLSIKAKPQKATEHTVSDTSDGTQPPAMCEQQTGIIREQDVKPVPDVDQGNDS 149


>tr|Q177T5|Q177T5_AEDAE Huntingtin interacting protein OS=Aedes
           aegypti GN=AAEL006013 PE=4 SV=1
          Length = 2367

 Score = 33.1 bits (74), Expect = 9.7
 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 12/146 (8%)
 Frame = -3

Query: 472 KDRSKRREGLLRIEMLQKESLTRRKVRGSPHRSKITKIEGLTKK*M*KLPLCLEGFQRMK 293
           ++  K  +  L  E  +K +  RRK   SP R K+  +E  TK    +   C E  + +K
Sbjct: 566 QEAEKTSKKTLTKESRRKSTSERRKSTHSPRRLKVEPVEQATK----EPETCREVIEPVK 621

Query: 292 FMQ-----TGGAEKELSNP*VEYTS-------TTPPPVELMPDTQTDHSTLEENSRAMEP 149
             Q     T   E  L  P  E T           PP+E+    + D S++    +  + 
Sbjct: 622 VEQVEPIVTEQKEATLCEPEKEQTKEEVRVKIKEEPPLEIQTVLKADASSI--TPKEQKK 679

Query: 148 STLETQESRIAKEQEKTLQDVNTGQD 71
           S+ E +ESR    + K  +  ++ +D
Sbjct: 680 SSKEGRESRKDSRKSKNREREHSSKD 705