BP918256 |
Clone id |
YMU001_000111_D03 |
Library |
YMU01 |
Length |
516 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000111_D03. |
Accession |
BP918256 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL4120Contig1 |
Sequence |
GGCTGCAGCTATGGCGATGGCTGCGTCTGCAATGGCGTGTGCATCTTCGGCCCCACCTCC ATCTTCTTCTTCGTCCTCCTCCCCTTCGTTTTCGTCTTCATCAACACCAGCGCCCATCCC AAGGCAGGTCCACTTTCCGAGCTCCATCCCTAACACGTCTCTTTCGACGACGCCCTCGAC CTCCCCTCACGACCCATCTCTTCAATTCGCAAACATGATGTGGTTCAAAGGTCCCTACAA TACGCAAATATTTGTGGGCGAGAATGAGCCTGCAGATTCTGTAGTGAGGCGCTTTCGACG TGCCGTCATGCAGGCAGGTATAATCGCAGAGTGCCGCCGCCGCCGTTTCTTTGAAACCCC ACAGGATATTGCAAAGCGGAAGCTCCAAGCAGCCCAGCGTAGACGATCCAAGTCGCGGTT CCTTCCAAGAGGAATGACTGATCCGAGGAAAACCAGCCAGACTACGCCTGCTGCTGATGA TGACGACAATGACAACTGGGAGTATGATGAAGTGGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P48949 |
Definition |
sp|P48949|RS21_SYNY3 30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803) |
Align length |
42 |
Score (bit) |
53.9 |
E-value |
4.0e-07 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TZ20 |
Definition |
tr|A9TZ20|A9TZ20_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
57 |
Score (bit) |
95.5 |
E-value |
1.0e-18 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918256|Adiantum capillus-veneris mRNA, clone: YMU001_000111_D03. (516 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TZ20|A9TZ20_PHYPA Predicted protein OS=Physcomitrella paten... 96 1e-18 tr|A9TIY3|A9TIY3_PHYPA Predicted protein OS=Physcomitrella paten... 96 1e-18 tr|A9NVI2|A9NVI2_PICSI Putative uncharacterized protein OS=Picea... 95 2e-18 tr|A9RWC0|A9RWC0_PHYPA Predicted protein OS=Physcomitrella paten... 94 4e-18 tr|A9RNE5|A9RNE5_PHYPA Predicted protein OS=Physcomitrella paten... 93 9e-18 tr|Q8VWX5|Q8VWX5_CUCSA Ribosome-like protein (Fragment) OS=Cucum... 75 2e-12 tr|A9P0L4|A9P0L4_PICSI Putative uncharacterized protein OS=Picea... 73 7e-12 tr|A7P9T2|A7P9T2_VITVI Chromosome chr14 scaffold_9, whole genome... 72 2e-11 tr|A5AI30|A5AI30_VITVI Putative uncharacterized protein OS=Vitis... 72 2e-11 tr|Q9LI88|Q9LI88_ARATH Arabidopsis thaliana genomic DNA, chromos... 67 5e-10 tr|Q94BT7|Q94BT7_ARATH AT3g27160/MYF5_3 OS=Arabidopsis thaliana ... 67 5e-10 tr|A9PGV4|A9PGV4_POPTR Putative uncharacterized protein OS=Popul... 67 5e-10 tr|A4S641|A4S641_OSTLU Plastid ribosomal protein S21 small ribos... 66 9e-10 tr|B7FMZ2|B7FMZ2_MEDTR Putative uncharacterized protein OS=Medic... 62 2e-08 tr|B1X100|B1X100_CYAA5 30S ribosomal protein S21 OS=Cyanothece (... 54 5e-06 tr|Q4BY05|Q4BY05_CROWT 30S ribosomal protein S21 OS=Crocosphaera... 54 5e-06 tr|B7JYC0|B7JYC0_SYNP8 Ribosomal protein S21 OS=Synechococcus sp... 54 5e-06 tr|B4BWF2|B4BWF2_9CHRO Ribosomal protein S21 OS=Cyanothece sp. P... 54 5e-06 tr|A3IGQ3|A3IGQ3_9CHRO 30S ribosomal protein S21 OS=Cyanothece s... 54 5e-06 tr|Q6YUV4|Q6YUV4_ORYSJ Os02g0189000 protein OS=Oryza sativa subs... 54 6e-06 tr|A2X1T8|A2X1T8_ORYSI Putative uncharacterized protein OS=Oryza... 54 6e-06 tr|B6TT66|B6TT66_MAIZE Ribosome-like protein OS=Zea mays PE=2 SV=1 53 8e-06 tr|B6TRC5|B6TRC5_MAIZE Ribosome-like protein OS=Zea mays PE=2 SV=1 53 8e-06 tr|B5W0V8|B5W0V8_SPIMA Ribosomal protein S21 OS=Arthrospira maxi... 53 1e-05 tr|B4AUQ5|B4AUQ5_9CHRO Ribosomal protein S21 OS=Cyanothece sp. P... 53 1e-05 tr|A8YDR2|A8YDR2_MICAE 30S ribosomal protein S21 OS=Microcystis ... 53 1e-05 tr|A0YNR8|A0YNR8_9CYAN 30S ribosomal protein S21 OS=Lyngbya sp. ... 53 1e-05 tr|B1XPL6|B1XPL6_SYNP2 Ribosomal protein S21 OS=Synechococcus sp... 52 2e-05 tr|B6U581|B6U581_MAIZE Ribosome-like protein OS=Zea mays PE=2 SV=1 52 2e-05 tr|B7KLD0|B7KLD0_9CHRO Ribosomal protein S21 OS=Cyanothece sp. P... 51 3e-05
>tr|A9TZ20|A9TZ20_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_61453 PE=4 SV=1 Length = 182
Score = 95.5 bits (236), Expect = 1e-18 Identities = 44/57 (77%), Positives = 50/57 (87%) Frame = +2
Query: 200 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQDI 370 L+F N+M+FKG YN Q+FVGE+EPADSVVRRFRRAVM AG+I ECRRRRF ET QDI Sbjct: 75 LEFVNVMYFKGSYNAQVFVGEDEPADSVVRRFRRAVMAAGVIPECRRRRFHETSQDI 131
>tr|A9TIY3|A9TIY3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_108240 PE=4 SV=1 Length = 177
Score = 95.5 bits (236), Expect = 1e-18 Identities = 43/57 (75%), Positives = 51/57 (89%) Frame = +2
Query: 200 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQDI 370 L+ N+M+FKG YNTQ+FVGE+EPADSVVRRFR+AVM AG+I ECRRRR+ ETPQDI Sbjct: 67 LEHVNVMYFKGTYNTQVFVGEDEPADSVVRRFRKAVMAAGVIPECRRRRYHETPQDI 123
>tr|A9NVI2|A9NVI2_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 161
Score = 94.7 bits (234), Expect = 2e-18 Identities = 41/57 (71%), Positives = 53/57 (92%), Gaps = 1/57 (1%) Frame = +2
Query: 203 QFANMMWFKGP-YNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQDI 370 ++AN+MWFKG YN Q+FVGE+EPAD+VVRRFR+AVM AG+I+EC+RRRFFE+PQD+ Sbjct: 51 EYANVMWFKGKHYNAQVFVGEDEPADAVVRRFRKAVMDAGVISECKRRRFFESPQDV 107
>tr|A9RWC0|A9RWC0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_161395 PE=4 SV=1 Length = 179
Score = 94.0 bits (232), Expect = 4e-18 Identities = 42/57 (73%), Positives = 50/57 (87%) Frame = +2
Query: 200 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQDI 370 L+ N+M+FKG YNTQ+FVGE+EPADSVVRRFR+AVM G+I ECRRRR+ ETPQDI Sbjct: 68 LEHVNVMYFKGTYNTQVFVGEDEPADSVVRRFRKAVMATGVIPECRRRRYHETPQDI 124
>tr|A9RNE5|A9RNE5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_160111 PE=4 SV=1 Length = 179
Score = 92.8 bits (229), Expect = 9e-18 Identities = 43/57 (75%), Positives = 49/57 (85%) Frame = +2
Query: 200 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQDI 370 ++F N+M+FKG YN QIFVGE+E ADSVVRRFRRAV AG+I ECRRRRF ETPQDI Sbjct: 72 MEFVNVMYFKGSYNAQIFVGEDESADSVVRRFRRAVSAAGVIPECRRRRFHETPQDI 128
>tr|Q8VWX5|Q8VWX5_CUCSA Ribosome-like protein (Fragment) OS=Cucumis sativus GN=rpo1 PE=2 SV=1 Length = 190
Score = 74.7 bits (182), Expect = 2e-12 Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 4/91 (4%) Frame = +2
Query: 200 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQDIXXX 379 L +AN M+F+ YN Q+ V +NEP + ++ RFRR VM+AG+I EC+RRRFFE QD+ Sbjct: 83 LAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKR 142
Query: 380 XXXXXXXXXSK----SRFLPRGMTDPRKTSQ 460 + +RF P+ D T Q Sbjct: 143 KTREAAKRNRRRRPQARFTPQNKQDVPATKQ 173
>tr|A9P0L4|A9P0L4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 143
Score = 73.2 bits (178), Expect = 7e-12 Identities = 34/48 (70%), Positives = 38/48 (79%) Frame = +2
Query: 227 KGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQDI 370 +G YN QIFVGENE DSVVRRFRR V +A + ECRRRRFFE+ QDI Sbjct: 50 RGGYNAQIFVGENESEDSVVRRFRREVFKANVFEECRRRRFFESKQDI 97
>tr|A7P9T2|A7P9T2_VITVI Chromosome chr14 scaffold_9, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037840001 PE=4 SV=1 Length = 173
Score = 72.0 bits (175), Expect = 2e-11 Identities = 30/56 (53%), Positives = 42/56 (75%) Frame = +2
Query: 200 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQD 367 L ++N ++FK YN Q+ V +NEP + ++ RFRR VM+AG+I EC+RRRFFE QD Sbjct: 80 LAYSNTLFFKSAYNVQVIVEDNEPEEKLLNRFRREVMRAGVIQECKRRRFFENKQD 135
>tr|A5AI30|A5AI30_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031115 PE=4 SV=1 Length = 188
Score = 72.0 bits (175), Expect = 2e-11 Identities = 30/56 (53%), Positives = 42/56 (75%) Frame = +2
Query: 200 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQD 367 L ++N ++FK YN Q+ V +NEP + ++ RFRR VM+AG+I EC+RRRFFE QD Sbjct: 80 LAYSNTLFFKSAYNVQVIVEDNEPEEKLLNRFRREVMRAGVIQECKRRRFFENKQD 135
>tr|Q9LI88|Q9LI88_ARATH Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MYF5 OS=Arabidopsis thaliana GN=At3g27160 PE=4 SV=1 Length = 183
Score = 67.0 bits (162), Expect = 5e-10 Identities = 28/56 (50%), Positives = 40/56 (71%) Frame = +2
Query: 200 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQD 367 L ++N ++F YN Q+FV +NE + +V RFRR VM+ G+I EC+RRR+FE QD Sbjct: 73 LAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECKRRRYFENKQD 128
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