BP918256
Clone id YMU001_000111_D03
Library
Length 516
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000111_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GGCTGCAGCTATGGCGATGGCTGCGTCTGCAATGGCGTGTGCATCTTCGGCCCCACCTCC
ATCTTCTTCTTCGTCCTCCTCCCCTTCGTTTTCGTCTTCATCAACACCAGCGCCCATCCC
AAGGCAGGTCCACTTTCCGAGCTCCATCCCTAACACGTCTCTTTCGACGACGCCCTCGAC
CTCCCCTCACGACCCATCTCTTCAATTCGCAAACATGATGTGGTTCAAAGGTCCCTACAA
TACGCAAATATTTGTGGGCGAGAATGAGCCTGCAGATTCTGTAGTGAGGCGCTTTCGACG
TGCCGTCATGCAGGCAGGTATAATCGCAGAGTGCCGCCGCCGCCGTTTCTTTGAAACCCC
ACAGGATATTGCAAAGCGGAAGCTCCAAGCAGCCCAGCGTAGACGATCCAAGTCGCGGTT
CCTTCCAAGAGGAATGACTGATCCGAGGAAAACCAGCCAGACTACGCCTGCTGCTGATGA
TGACGACAATGACAACTGGGAGTATGATGAAGTGGC
■■Homology search results ■■ -
sp_hit_id P48949
Definition sp|P48949|RS21_SYNY3 30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803)
Align length 42
Score (bit) 53.9
E-value 4.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918256|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_D03.
(516 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P48949|RS21_SYNY3 30S ribosomal protein S21 OS=Synechocystis ... 54 4e-07
sp|B0JIQ1|RS21_MICAN 30S ribosomal protein S21 OS=Microcystis ae... 53 1e-06
sp|P0A4B8|RS21A_ANAVA 30S ribosomal protein S21 A OS=Anabaena va... 50 8e-06
sp|P0A4B7|RS21A_ANASP 30S ribosomal protein S21 A OS=Anabaena sp... 50 8e-06
sp|Q3M446|RS213_ANAVT 30S ribosomal protein S21 3 OS=Anabaena va... 50 8e-06
sp|Q3M4P1|RS212_ANAVT 30S ribosomal protein S21 2 OS=Anabaena va... 50 8e-06
sp|Q10VZ7|RS21_TRIEI 30S ribosomal protein S21 OS=Trichodesmium ... 49 1e-05
sp|B0CE36|RS21_ACAM1 30S ribosomal protein S21 OS=Acaryochloris ... 49 1e-05
sp|Q7NHK6|RS211_GLOVI 30S ribosomal protein S21 1 OS=Gloeobacter... 49 2e-05
sp|Q8YYK5|RS21B_ANASP 30S ribosomal protein S21 B OS=Anabaena sp... 48 3e-05
sp|Q0I7A8|RS21_SYNS3 30S ribosomal protein S21 OS=Synechococcus ... 47 4e-05
sp|A5GQU6|RS21_SYNR3 30S ribosomal protein S21 OS=Synechococcus ... 47 4e-05
sp|A5GNP9|RS21_SYNPW 30S ribosomal protein S21 OS=Synechococcus ... 47 4e-05
sp|Q46IX8|RS21_PROMT 30S ribosomal protein S21 OS=Prochlorococcu... 47 5e-05
sp|A2C4T1|RS21_PROM1 30S ribosomal protein S21 OS=Prochlorococcu... 47 5e-05
sp|Q8KA57|RS21_BUCAP 30S ribosomal protein S21 OS=Buchnera aphid... 47 5e-05
sp|P57165|RS21_BUCAI 30S ribosomal protein S21 OS=Buchnera aphid... 47 5e-05
sp|Q665U4|RS21_YERPS 30S ribosomal protein S21 OS=Yersinia pseud... 47 7e-05
sp|A4THT0|RS21_YERPP 30S ribosomal protein S21 OS=Yersinia pesti... 47 7e-05
sp|Q1CME3|RS21_YERPN 30S ribosomal protein S21 OS=Yersinia pesti... 47 7e-05
sp|P68686|RS21_YERPE 30S ribosomal protein S21 OS=Yersinia pesti... 47 7e-05
sp|Q1C365|RS21_YERPA 30S ribosomal protein S21 OS=Yersinia pesti... 47 7e-05
sp|A7FE70|RS21_YERP3 30S ribosomal protein S21 OS=Yersinia pseud... 47 7e-05
sp|A1JQX1|RS21_YERE8 30S ribosomal protein S21 OS=Yersinia enter... 47 7e-05
sp|Q2NWE7|RS21_SODGM 30S ribosomal protein S21 OS=Sodalis glossi... 47 7e-05
sp|Q3YXH8|RS21_SHISS 30S ribosomal protein S21 OS=Shigella sonne... 47 7e-05
sp|P68685|RS21_SHIFL 30S ribosomal protein S21 OS=Shigella flexn... 47 7e-05
sp|Q0T0J8|RS21_SHIF8 30S ribosomal protein S21 OS=Shigella flexn... 47 7e-05
sp|Q32BQ2|RS21_SHIDS 30S ribosomal protein S21 OS=Shigella dysen... 47 7e-05
sp|Q31WW9|RS21_SHIBS 30S ribosomal protein S21 OS=Shigella boydi... 47 7e-05

>sp|P48949|RS21_SYNY3 30S ribosomal protein S21 OS=Synechocystis sp.
(strain PCC 6803) GN=rpsU PE=3 SV=1
Length = 60

Score = 53.9 bits (128), Expect = 4e-07
Identities = 22/42 (52%), Positives = 33/42 (78%)
Frame = +2

Query: 242 TQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQD 367
TQ+ VG+NEP +S +RRF+R V +AGI + ++ +FFETPQ+
Sbjct: 2 TQVVVGQNEPIESALRRFKRQVAKAGIYTDFKKHQFFETPQE 43


>sp|B0JIQ1|RS21_MICAN 30S ribosomal protein S21 OS=Microcystis
aeruginosa (strain NIES-843) GN=rpsU PE=3 SV=1
Length = 60

Score = 52.8 bits (125), Expect = 1e-06
Identities = 22/42 (52%), Positives = 33/42 (78%)
Frame = +2

Query: 242 TQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQD 367
TQ+ VG+NE +S +RRF+R V +AGI A+ ++ +FFETPQ+
Sbjct: 2 TQVVVGQNEAIESALRRFKRQVAKAGIYADIKKHQFFETPQE 43


>sp|P0A4B8|RS21A_ANAVA 30S ribosomal protein S21 A OS=Anabaena
variabilis GN=rpsU1 PE=1 SV=3
Length = 62

Score = 49.7 bits (117), Expect = 8e-06
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +2

Query: 242 TQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETP 361
TQI VGENE +S +RRF+R V +AGI + R+ R FETP
Sbjct: 2 TQIVVGENEHIESALRRFKREVSKAGIFQDMRKHRHFETP 41


>sp|P0A4B7|RS21A_ANASP 30S ribosomal protein S21 A OS=Anabaena sp.
(strain PCC 7120) GN=rpsU1 PE=3 SV=1
Length = 62

Score = 49.7 bits (117), Expect = 8e-06
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +2

Query: 242 TQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETP 361
TQI VGENE +S +RRF+R V +AGI + R+ R FETP
Sbjct: 2 TQIVVGENEHIESALRRFKREVSKAGIFQDMRKHRHFETP 41


>sp|Q3M446|RS213_ANAVT 30S ribosomal protein S21 3 OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=rpsU3 PE=3
SV=1
Length = 62

Score = 49.7 bits (117), Expect = 8e-06
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +2

Query: 242 TQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETP 361
TQI VGENE +S +RRF+R V +AGI + R+ R FETP
Sbjct: 2 TQIVVGENEHIESALRRFKREVSKAGIFQDMRKHRHFETP 41


>sp|Q3M4P1|RS212_ANAVT 30S ribosomal protein S21 2 OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=rpsU2 PE=3
SV=1
Length = 58

Score = 49.7 bits (117), Expect = 8e-06
Identities = 22/40 (55%), Positives = 30/40 (75%)
Frame = +2

Query: 242 TQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETP 361
TQ+ +GENE DS +RRF+R V +AGI+A+ + R FETP
Sbjct: 2 TQVVLGENEGIDSALRRFKRQVSKAGILADVKYHRHFETP 41


>sp|Q10VZ7|RS21_TRIEI 30S ribosomal protein S21 OS=Trichodesmium
erythraeum (strain IMS101) GN=rpsU PE=3 SV=1
Length = 62

Score = 48.9 bits (115), Expect = 1e-05
Identities = 21/40 (52%), Positives = 29/40 (72%)
Frame = +2

Query: 242 TQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETP 361
TQ+ +GENE +S +RRF+R V QAGI + ++ R FETP
Sbjct: 2 TQVILGENEGIESALRRFKRQVSQAGIFPDMKKHRHFETP 41


>sp|B0CE36|RS21_ACAM1 30S ribosomal protein S21 OS=Acaryochloris
marina (strain MBIC 11017) GN=rpsU PE=3 SV=1
Length = 59

Score = 48.9 bits (115), Expect = 1e-05
Identities = 21/39 (53%), Positives = 31/39 (79%)
Frame = +2

Query: 245 QIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETP 361
Q+ +GE+E +S +RRF+R V +AGI+A+ +RRR FETP
Sbjct: 3 QVVLGEDEGIESALRRFKRQVSKAGILADVKRRRHFETP 41


>sp|Q7NHK6|RS211_GLOVI 30S ribosomal protein S21 1 OS=Gloeobacter
violaceus GN=rpsU1 PE=3 SV=1
Length = 59

Score = 48.5 bits (114), Expect = 2e-05
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +2

Query: 245 QIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETP 361
Q+ VG++E +S +RRF+R V +AGI+AE +R R FETP
Sbjct: 3 QVRVGQDESIESALRRFKRTVAKAGILAEAKRHRHFETP 41


>sp|Q8YYK5|RS21B_ANASP 30S ribosomal protein S21 B OS=Anabaena sp.
(strain PCC 7120) GN=rpsU2 PE=3 SV=1
Length = 58

Score = 47.8 bits (112), Expect = 3e-05
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = +2

Query: 242 TQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETP 361
TQ+ +GE+E DS +RRF+R V +AGI+A+ + R FETP
Sbjct: 2 TQVVLGEHEGIDSALRRFKRQVSKAGILADVKYHRHFETP 41


tr_hit_id A9TZ20
Definition tr|A9TZ20|A9TZ20_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 57
Score (bit) 95.5
E-value 1.0e-18
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918256|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_D03.
(516 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TZ20|A9TZ20_PHYPA Predicted protein OS=Physcomitrella paten... 96 1e-18
tr|A9TIY3|A9TIY3_PHYPA Predicted protein OS=Physcomitrella paten... 96 1e-18
tr|A9NVI2|A9NVI2_PICSI Putative uncharacterized protein OS=Picea... 95 2e-18
tr|A9RWC0|A9RWC0_PHYPA Predicted protein OS=Physcomitrella paten... 94 4e-18
tr|A9RNE5|A9RNE5_PHYPA Predicted protein OS=Physcomitrella paten... 93 9e-18
tr|Q8VWX5|Q8VWX5_CUCSA Ribosome-like protein (Fragment) OS=Cucum... 75 2e-12
tr|A9P0L4|A9P0L4_PICSI Putative uncharacterized protein OS=Picea... 73 7e-12
tr|A7P9T2|A7P9T2_VITVI Chromosome chr14 scaffold_9, whole genome... 72 2e-11
tr|A5AI30|A5AI30_VITVI Putative uncharacterized protein OS=Vitis... 72 2e-11
tr|Q9LI88|Q9LI88_ARATH Arabidopsis thaliana genomic DNA, chromos... 67 5e-10
tr|Q94BT7|Q94BT7_ARATH AT3g27160/MYF5_3 OS=Arabidopsis thaliana ... 67 5e-10
tr|A9PGV4|A9PGV4_POPTR Putative uncharacterized protein OS=Popul... 67 5e-10
tr|A4S641|A4S641_OSTLU Plastid ribosomal protein S21 small ribos... 66 9e-10
tr|B7FMZ2|B7FMZ2_MEDTR Putative uncharacterized protein OS=Medic... 62 2e-08
tr|B1X100|B1X100_CYAA5 30S ribosomal protein S21 OS=Cyanothece (... 54 5e-06
tr|Q4BY05|Q4BY05_CROWT 30S ribosomal protein S21 OS=Crocosphaera... 54 5e-06
tr|B7JYC0|B7JYC0_SYNP8 Ribosomal protein S21 OS=Synechococcus sp... 54 5e-06
tr|B4BWF2|B4BWF2_9CHRO Ribosomal protein S21 OS=Cyanothece sp. P... 54 5e-06
tr|A3IGQ3|A3IGQ3_9CHRO 30S ribosomal protein S21 OS=Cyanothece s... 54 5e-06
tr|Q6YUV4|Q6YUV4_ORYSJ Os02g0189000 protein OS=Oryza sativa subs... 54 6e-06
tr|A2X1T8|A2X1T8_ORYSI Putative uncharacterized protein OS=Oryza... 54 6e-06
tr|B6TT66|B6TT66_MAIZE Ribosome-like protein OS=Zea mays PE=2 SV=1 53 8e-06
tr|B6TRC5|B6TRC5_MAIZE Ribosome-like protein OS=Zea mays PE=2 SV=1 53 8e-06
tr|B5W0V8|B5W0V8_SPIMA Ribosomal protein S21 OS=Arthrospira maxi... 53 1e-05
tr|B4AUQ5|B4AUQ5_9CHRO Ribosomal protein S21 OS=Cyanothece sp. P... 53 1e-05
tr|A8YDR2|A8YDR2_MICAE 30S ribosomal protein S21 OS=Microcystis ... 53 1e-05
tr|A0YNR8|A0YNR8_9CYAN 30S ribosomal protein S21 OS=Lyngbya sp. ... 53 1e-05
tr|B1XPL6|B1XPL6_SYNP2 Ribosomal protein S21 OS=Synechococcus sp... 52 2e-05
tr|B6U581|B6U581_MAIZE Ribosome-like protein OS=Zea mays PE=2 SV=1 52 2e-05
tr|B7KLD0|B7KLD0_9CHRO Ribosomal protein S21 OS=Cyanothece sp. P... 51 3e-05

>tr|A9TZ20|A9TZ20_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_61453 PE=4 SV=1
Length = 182

Score = 95.5 bits (236), Expect = 1e-18
Identities = 44/57 (77%), Positives = 50/57 (87%)
Frame = +2

Query: 200 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQDI 370
L+F N+M+FKG YN Q+FVGE+EPADSVVRRFRRAVM AG+I ECRRRRF ET QDI
Sbjct: 75 LEFVNVMYFKGSYNAQVFVGEDEPADSVVRRFRRAVMAAGVIPECRRRRFHETSQDI 131


>tr|A9TIY3|A9TIY3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_108240 PE=4 SV=1
Length = 177

Score = 95.5 bits (236), Expect = 1e-18
Identities = 43/57 (75%), Positives = 51/57 (89%)
Frame = +2

Query: 200 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQDI 370
L+ N+M+FKG YNTQ+FVGE+EPADSVVRRFR+AVM AG+I ECRRRR+ ETPQDI
Sbjct: 67 LEHVNVMYFKGTYNTQVFVGEDEPADSVVRRFRKAVMAAGVIPECRRRRYHETPQDI 123


>tr|A9NVI2|A9NVI2_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 161

Score = 94.7 bits (234), Expect = 2e-18
Identities = 41/57 (71%), Positives = 53/57 (92%), Gaps = 1/57 (1%)
Frame = +2

Query: 203 QFANMMWFKGP-YNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQDI 370
++AN+MWFKG YN Q+FVGE+EPAD+VVRRFR+AVM AG+I+EC+RRRFFE+PQD+
Sbjct: 51 EYANVMWFKGKHYNAQVFVGEDEPADAVVRRFRKAVMDAGVISECKRRRFFESPQDV 107


>tr|A9RWC0|A9RWC0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_161395 PE=4 SV=1
Length = 179

Score = 94.0 bits (232), Expect = 4e-18
Identities = 42/57 (73%), Positives = 50/57 (87%)
Frame = +2

Query: 200 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQDI 370
L+ N+M+FKG YNTQ+FVGE+EPADSVVRRFR+AVM G+I ECRRRR+ ETPQDI
Sbjct: 68 LEHVNVMYFKGTYNTQVFVGEDEPADSVVRRFRKAVMATGVIPECRRRRYHETPQDI 124


>tr|A9RNE5|A9RNE5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_160111 PE=4 SV=1
Length = 179

Score = 92.8 bits (229), Expect = 9e-18
Identities = 43/57 (75%), Positives = 49/57 (85%)
Frame = +2

Query: 200 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQDI 370
++F N+M+FKG YN QIFVGE+E ADSVVRRFRRAV AG+I ECRRRRF ETPQDI
Sbjct: 72 MEFVNVMYFKGSYNAQIFVGEDESADSVVRRFRRAVSAAGVIPECRRRRFHETPQDI 128


>tr|Q8VWX5|Q8VWX5_CUCSA Ribosome-like protein (Fragment) OS=Cucumis
sativus GN=rpo1 PE=2 SV=1
Length = 190

Score = 74.7 bits (182), Expect = 2e-12
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Frame = +2

Query: 200 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQDIXXX 379
L +AN M+F+ YN Q+ V +NEP + ++ RFRR VM+AG+I EC+RRRFFE QD+
Sbjct: 83 LAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKR 142

Query: 380 XXXXXXXXXSK----SRFLPRGMTDPRKTSQ 460
+ +RF P+ D T Q
Sbjct: 143 KTREAAKRNRRRRPQARFTPQNKQDVPATKQ 173


>tr|A9P0L4|A9P0L4_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 143

Score = 73.2 bits (178), Expect = 7e-12
Identities = 34/48 (70%), Positives = 38/48 (79%)
Frame = +2

Query: 227 KGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQDI 370
+G YN QIFVGENE DSVVRRFRR V +A + ECRRRRFFE+ QDI
Sbjct: 50 RGGYNAQIFVGENESEDSVVRRFRREVFKANVFEECRRRRFFESKQDI 97


>tr|A7P9T2|A7P9T2_VITVI Chromosome chr14 scaffold_9, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00037840001
PE=4 SV=1
Length = 173

Score = 72.0 bits (175), Expect = 2e-11
Identities = 30/56 (53%), Positives = 42/56 (75%)
Frame = +2

Query: 200 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQD 367
L ++N ++FK YN Q+ V +NEP + ++ RFRR VM+AG+I EC+RRRFFE QD
Sbjct: 80 LAYSNTLFFKSAYNVQVIVEDNEPEEKLLNRFRREVMRAGVIQECKRRRFFENKQD 135


>tr|A5AI30|A5AI30_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_031115 PE=4 SV=1
Length = 188

Score = 72.0 bits (175), Expect = 2e-11
Identities = 30/56 (53%), Positives = 42/56 (75%)
Frame = +2

Query: 200 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQD 367
L ++N ++FK YN Q+ V +NEP + ++ RFRR VM+AG+I EC+RRRFFE QD
Sbjct: 80 LAYSNTLFFKSAYNVQVIVEDNEPEEKLLNRFRREVMRAGVIQECKRRRFFENKQD 135


>tr|Q9LI88|Q9LI88_ARATH Arabidopsis thaliana genomic DNA, chromosome
3, P1 clone:MYF5 OS=Arabidopsis thaliana GN=At3g27160
PE=4 SV=1
Length = 183

Score = 67.0 bits (162), Expect = 5e-10
Identities = 28/56 (50%), Positives = 40/56 (71%)
Frame = +2

Query: 200 LQFANMMWFKGPYNTQIFVGENEPADSVVRRFRRAVMQAGIIAECRRRRFFETPQD 367
L ++N ++F YN Q+FV +NE + +V RFRR VM+ G+I EC+RRR+FE QD
Sbjct: 73 LAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECKRRRYFENKQD 128