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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918262
Clone id YMU001_000111_D09
Library
Length 248
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000111_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGAAGAAGAAGAGGCTGAAAGAAAGCAAGCCCATCTCAGCAAACCTGCCACACAGGAAAA
ATCTGCCTTTTGGACTGCTTGTCCACACTGCAAAATACAGCTCGAGTATGAGAAGACTTA
CATGAACAAGAACATGTGTTGTCCCATGTGTTACAGGCCTTTTGTCTCGAAGGAAATCGA
GCCTATACAGGGAGCTGTTCTCTGGCAACGCCCTATGCGGCAGTCTTCAGAAAAAGGATG
CTGGCAAC
■■Homology search results ■■ -
sp_hit_id Q3UGF1
Definition sp|Q3UGF1|WDR19_MOUSE WD repeat-containing protein 19 OS=Mus musculus
Align length 41
Score (bit) 35.0
E-value 0.12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918262|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_D09.
         (248 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3UGF1|WDR19_MOUSE WD repeat-containing protein 19 OS=Mus mus...    35   0.12 
sp|Q8NEZ3|WDR19_HUMAN WD repeat-containing protein 19 OS=Homo sa...    35   0.15 
sp|O70521|RGS19_RAT Regulator of G-protein signaling 19 OS=Rattu...    34   0.26 
sp|Q9CX84|RGS19_MOUSE Regulator of G-protein signaling 19 OS=Mus...    34   0.26 
sp|P49795|RGS19_HUMAN Regulator of G-protein signaling 19 OS=Hom...    32   0.75 
sp|Q4FUU7|FPG_PSYA2 Formamidopyrimidine-DNA glycosylase OS=Psych...    30   2.9  
sp|A6H0N9|DNLJ_FLAPJ DNA ligase OS=Flavobacterium psychrophilum ...    30   3.7  
sp|A8ABJ9|TFE_IGNH4 Transcription factor E OS=Ignicoccus hospita...    30   4.9  
sp|Q9UL36|ZN236_HUMAN Zinc finger protein 236 OS=Homo sapiens GN...    29   6.4  
sp|Q6MEK6|ACCD_PARUW Acetyl-coenzyme A carboxylase carboxyl tran...    29   6.4  
sp|P15619|SRYC_DROME Serendipity locus protein H-1 OS=Drosophila...    29   8.3  
sp|Q08DC7|RGS19_BOVIN Regulator of G-protein signaling 19 OS=Bos...    29   8.3  

>sp|Q3UGF1|WDR19_MOUSE WD repeat-containing protein 19 OS=Mus musculus
            GN=Wdr19 PE=2 SV=1
          Length = 1341

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +2

Query: 71   WTACPHCKIQLEYE--KTYMNKNMCCPMCYRPFVSKEIEPI 187
            WT CPHC     Y   K  +N    CPMC     S +++ I
Sbjct: 1289 WTMCPHCGFPALYSEFKILLNSESTCPMCSERLNSSQLKKI 1329


>sp|Q8NEZ3|WDR19_HUMAN WD repeat-containing protein 19 OS=Homo sapiens
            GN=WDR19 PE=2 SV=2
          Length = 1342

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +2

Query: 71   WTACPHCKIQLEYE--KTYMNKNMCCPMCYRPFVSKEIEPIQGAVLWQR 211
            WT CPHC     Y   K  +N    CPMC     + +++ I     + R
Sbjct: 1289 WTVCPHCDFPALYSELKIMLNTESTCPMCSERLNAAQLKKISDCTQYLR 1337


>sp|O70521|RGS19_RAT Regulator of G-protein signaling 19 OS=Rattus
           norvegicus GN=Rgs19 PE=1 SV=1
          Length = 216

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -1

Query: 173 PSRQKACNTWDNTCSCSCKSSHTRAVFCSVDKQSKRQIFPVWQVC 39
           PSR   C  W   C CSC  +  R     V ++SK Q  P  +VC
Sbjct: 34  PSRNPCCLCW--CCCCSCSWNQERQRAWQVSRESKLQPLPSCEVC 76


>sp|Q9CX84|RGS19_MOUSE Regulator of G-protein signaling 19 OS=Mus
           musculus GN=Rgs19 PE=2 SV=1
          Length = 216

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -1

Query: 173 PSRQKACNTWDNTCSCSCKSSHTRAVFCSVDKQSKRQIFPVWQVC 39
           PSR   C  W   C CSC  +  R     V ++SK Q  P  +VC
Sbjct: 34  PSRNPCCLCW--CCCCSCSWNQERQRAWQVSRESKLQPLPSCEVC 76


>sp|P49795|RGS19_HUMAN Regulator of G-protein signaling 19 OS=Homo
           sapiens GN=RGS19 PE=1 SV=1
          Length = 217

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -1

Query: 173 PSRQKACNTWDNTCSCSCKSSHTRAVFCSVDKQSKRQIFPVWQVC 39
           PSR   C  W   CSCS      RA      ++SK Q  P  +VC
Sbjct: 34  PSRNPCCLCWCCCCSCSWNQERRRA--WQASRESKLQPLPSCEVC 76


>sp|Q4FUU7|FPG_PSYA2 Formamidopyrimidine-DNA glycosylase
           OS=Psychrobacter arcticus (strain DSM 17307 / 273-4)
           GN=mutM PE=3 SV=3
          Length = 309

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 77  ACPHCKIQLEYEKTYMNKNMCCPMCYRPFVS 169
           ACPHC+  LE  K     ++ CP+C +P +S
Sbjct: 279 ACPHCESTLENIKLNGRASVYCPLC-QPIIS 308


>sp|A6H0N9|DNLJ_FLAPJ DNA ligase OS=Flavobacterium psychrophilum
           (strain JIP02/86 / ATCC 49511) GN=ligA PE=3 SV=1
          Length = 666

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 41  KPATQEKSAFWTACPHCKIQLEYEKTYMNKNMCCPMCY--RPFVSKEIE 181
           +P+  +K+A+ T CP C+ +LE ++     N  CP  Y  RP +   I+
Sbjct: 390 RPSNSQKTAYITHCPECQTKLERKEG--EANHYCPNFYGCRPQIIGRIQ 436


>sp|A8ABJ9|TFE_IGNH4 Transcription factor E OS=Ignicoccus hospitalis
           (strain KIN4/I / DSM 18386 / JCM 14125) GN=tfe PE=3 SV=1
          Length = 173

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 80  CPHCKIQLEYEKTYMNKNMCCPMCYRPFVSKEIEP 184
           CP C +Q  YE+  M  +  CP C  P    E  P
Sbjct: 117 CPACGLQFSYEEA-MGYDFTCPRCGEPLELAESNP 150


>sp|Q9UL36|ZN236_HUMAN Zinc finger protein 236 OS=Homo sapiens
           GN=ZNF236 PE=2 SV=1
          Length = 1845

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
 Frame = +2

Query: 2   EEEEAERKQAHLSKPATQEKSAFWTACPHCKIQLEYEKTYMN--------KNMCCPMCYR 157
           E++  ++K   L     +E    W  CP+C  +       +         K   CP C+R
Sbjct: 458 EKKMIKKKSPFLPGSIREENGVRWHVCPYCAKEFRKPSDLVRHIRIHTHEKPFKCPQCFR 517

Query: 158 PFVSK 172
            F  K
Sbjct: 518 AFAVK 522


>sp|Q6MEK6|ACCD_PARUW Acetyl-coenzyme A carboxylase carboxyl
           transferase subunit beta OS=Protochlamydia amoebophila
           (strain UWE25) GN=accD PE=3 SV=1
          Length = 305

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +2

Query: 41  KPATQEKSAF--WTACPHCKIQLEYEKTYMNKNMCCPMC 151
           K  T +K  F  W  C HC   +   +   N N CCP C
Sbjct: 12  KIQTTKKDGFSGWLKCTHCNELIHANELEQNSN-CCPKC 49
tr_hit_id Q9FGM2
Definition tr|Q9FGM2|Q9FGM2_ARATH DnaJ protein-like OS=Arabidopsis thaliana
Align length 45
Score (bit) 55.8
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918262|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_D09.
         (248 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FGM2|Q9FGM2_ARATH DnaJ protein-like OS=Arabidopsis thaliana...    56   1e-06
tr|Q6NMG4|Q6NMG4_ARATH At5g53150 OS=Arabidopsis thaliana PE=2 SV=1     56   1e-06
tr|A7QP45|A7QP45_VITVI Chromosome chr1 scaffold_136, whole genom...    56   1e-06
tr|B8AQZ1|B8AQZ1_ORYSI Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|Q9SLA7|Q9SLA7_ARATH At2g25560/F13B15.22 (Putative DnaJ protei...    55   2e-06
tr|A9TAD3|A9TAD3_PHYPA Predicted protein (Fragment) OS=Physcomit...    55   2e-06
tr|A7PHJ3|A7PHJ3_VITVI Chromosome chr17 scaffold_16, whole genom...    55   2e-06
tr|A5AWU3|A5AWU3_VITVI Putative uncharacterized protein OS=Vitis...    55   2e-06
tr|Q94H83|Q94H83_ORYSJ Os03g0401200 protein OS=Oryza sativa subs...    54   5e-06
tr|A7PC09|A7PC09_VITVI Chromosome chr2 scaffold_11, whole genome...    51   3e-05
tr|A7QP44|A7QP44_VITVI Chromosome chr1 scaffold_136, whole genom...    50   4e-05
tr|Q9S7L6|Q9S7L6_ARATH Expressed protein (Putative uncharacteriz...    49   1e-04
tr|A7QTV7|A7QTV7_VITVI Chromosome undetermined scaffold_171, who...    49   1e-04
tr|A2X592|A2X592_ORYSI Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|Q6K2F0|Q6K2F0_ORYSJ Os02g0510000 protein OS=Oryza sativa subs...    49   2e-04
tr|Q7XKR2|Q7XKR2_ORYSJ OSJNBa0053B21.9 protein OS=Oryza sativa s...    48   3e-04
tr|Q0JDP0|Q0JDP0_ORYSJ Os04g0388800 protein (Fragment) OS=Oryza ...    48   3e-04
tr|Q01LE1|Q01LE1_ORYSA OSIGBa0096P03.4 protein OS=Oryza sativa G...    48   3e-04
tr|A3AT90|A3AT90_ORYSJ Putative uncharacterized protein OS=Oryza...    48   3e-04
tr|A2XSS7|A2XSS7_ORYSI Putative uncharacterized protein OS=Oryza...    48   3e-04
tr|Q3E7E4|Q3E7E4_ARATH Uncharacterized protein At5g35753.1 OS=Ar...    47   4e-04
tr|A5BIN8|A5BIN8_VITVI Putative uncharacterized protein OS=Vitis...    47   4e-04
tr|Q5VRZ9|Q5VRZ9_ORYSJ DnaJ protein-like (Putative uncharacteriz...    46   0.001
tr|Q0DF71|Q0DF71_ORYSJ Os06g0111700 protein (Fragment) OS=Oryza ...    46   0.001
tr|A2YU41|A2YU41_ORYSI Putative uncharacterized protein OS=Oryza...    46   0.001
tr|Q9FHS7|Q9FHS7_ARATH Similarity to DnaJ protein (At5g37380/MNJ...    45   0.002
tr|Q8RYF9|Q8RYF9_ORYSJ Heat shock protein-like (Putative unchara...    45   0.002
tr|A7Q327|A7Q327_VITVI Chromosome chr12 scaffold_47, whole genom...    45   0.002
tr|A5B022|A5B022_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|Q2R254|Q2R254_ORYSJ DnaJ domain containing protein, expressed...    45   0.002

>tr|Q9FGM2|Q9FGM2_ARATH DnaJ protein-like OS=Arabidopsis thaliana
           GN=At5g53150 PE=4 SV=1
          Length = 755

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = +2

Query: 50  TQEKSAFWTACPHCKIQLEYEKTYMNKNMCCPMCYRPFVSKEIEP 184
           TQE S FWT C  C  Q EY++ Y+N+ + CP C+  FV++E  P
Sbjct: 198 TQESSTFWTMCNKCDTQYEYQRVYLNQTLLCPHCHHGFVAEEKTP 242


>tr|Q6NMG4|Q6NMG4_ARATH At5g53150 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 726

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = +2

Query: 50  TQEKSAFWTACPHCKIQLEYEKTYMNKNMCCPMCYRPFVSKEIEP 184
           TQE S FWT C  C  Q EY++ Y+N+ + CP C+  FV++E  P
Sbjct: 198 TQESSTFWTMCNKCDTQYEYQRVYLNQTLLCPHCHHGFVAEEKTP 242


>tr|A7QP45|A7QP45_VITVI Chromosome chr1 scaffold_136, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002795001
           PE=4 SV=1
          Length = 817

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 24/52 (46%), Positives = 30/52 (57%)
 Frame = +2

Query: 29  AHLSKPATQEKSAFWTACPHCKIQLEYEKTYMNKNMCCPMCYRPFVSKEIEP 184
           AH  KP T     FWT C  CK+Q EY + Y+N N+ CP C+ PF + E  P
Sbjct: 184 AHKPKPNT-----FWTVCHRCKMQYEYLRIYLNHNLLCPNCHEPFFAVETPP 230


>tr|B8AQZ1|B8AQZ1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_11948 PE=4 SV=1
          Length = 748

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 20/45 (44%), Positives = 28/45 (62%)
 Frame = +2

Query: 44  PATQEKSAFWTACPHCKIQLEYEKTYMNKNMCCPMCYRPFVSKEI 178
           P   +   FWT+C  CK+  EY K Y+N N+ CP C  PF++KE+
Sbjct: 199 PPPAKPPTFWTSCNKCKMNYEYLKVYLNHNLLCPTCREPFLAKEV 243


>tr|Q9SLA7|Q9SLA7_ARATH At2g25560/F13B15.22 (Putative DnaJ protein)
           OS=Arabidopsis thaliana GN=At2g25560 PE=2 SV=1
          Length = 656

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 20/49 (40%), Positives = 28/49 (57%)
 Frame = +2

Query: 38  SKPATQEKSAFWTACPHCKIQLEYEKTYMNKNMCCPMCYRPFVSKEIEP 184
           S   T     FWT C  C+ Q EY   Y+N+N+ CP C +PF++ E +P
Sbjct: 185 SAQKTTADGTFWTVCRTCRTQYEYHSVYLNQNLLCPNCRKPFIAVETDP 233


>tr|A9TAD3|A9TAD3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_17769 PE=4 SV=1
          Length = 184

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 19/45 (42%), Positives = 30/45 (66%)
 Frame = +2

Query: 44  PATQEKSAFWTACPHCKIQLEYEKTYMNKNMCCPMCYRPFVSKEI 178
           PA      FWT+CP C++Q +Y +TY+N  + C  C+ PF++K+I
Sbjct: 140 PAPHPSLTFWTSCPECRMQYQYLRTYLNYQLLCQKCHIPFLAKDI 184


>tr|A7PHJ3|A7PHJ3_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017963001
           PE=4 SV=1
          Length = 679

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 19/47 (40%), Positives = 31/47 (65%)
 Frame = +2

Query: 44  PATQEKSAFWTACPHCKIQLEYEKTYMNKNMCCPMCYRPFVSKEIEP 184
           P++ + + FWT C  C++Q EY +TY+N  + CP C+ PF++ E  P
Sbjct: 153 PSSSKPNTFWTLCSLCRMQYEYLRTYLNHTLLCPNCHEPFLAFETPP 199


>tr|A5AWU3|A5AWU3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001272 PE=4 SV=1
          Length = 951

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 19/47 (40%), Positives = 31/47 (65%)
 Frame = +2

Query: 44  PATQEKSAFWTACPHCKIQLEYEKTYMNKNMCCPMCYRPFVSKEIEP 184
           P++ + + FWT C  C++Q EY +TY+N  + CP C+ PF++ E  P
Sbjct: 285 PSSSKPNTFWTLCSLCRMQYEYLRTYLNHTLLCPNCHEPFLAFETPP 331


>tr|Q94H83|Q94H83_ORYSJ Os03g0401200 protein OS=Oryza sativa subsp.
           japonica GN=Os03g28310 PE=4 SV=1
          Length = 748

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +2

Query: 44  PATQEKSAFWTACPHCKIQLEYEKTYMNKNMCCPMCYRPFVSKEI 178
           P   +   FWT+C  CK+  EY K Y+N N+ CP C  PF+++E+
Sbjct: 199 PPPAKPPTFWTSCNKCKMNYEYLKVYLNHNLLCPTCREPFLAQEV 243


>tr|A7PC09|A7PC09_VITVI Chromosome chr2 scaffold_11, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015663001
           PE=4 SV=1
          Length = 473

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 19/53 (35%), Positives = 32/53 (60%)
 Frame = +2

Query: 44  PATQEKSAFWTACPHCKIQLEYEKTYMNKNMCCPMCYRPFVSKEIEPIQGAVL 202
           P   E + FWTAC  C++  ++E+ Y+ +N+ CP C + F++ E+E     VL
Sbjct: 117 PLPPEMATFWTACSTCRLLHQFERKYIGQNLMCPSCKKSFLALEVENQNNEVL 169