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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918264
Clone id YMU001_000111_D11
Library
Length 356
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000111_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAAGTCTCTCATGTTTATGACATGGATCTTCCCAAGGACGATTCAAATCCTTTGGGATGT
AATCATGATGGTCCTTTGTTGCTGCTCTCTCAACTCTCTCCTCTATTTGGCTAAAGCAGA
TTGTGTCATTGCATCACTTTGAAAGCCCACAAGTTACACAAAGCAACCATAATCCATGAC
ACGTGAAACCCTACCACAATAAACATAGCTCGAGTTCTTACAATTGATGCCCTTTTAAAG
AGCTAGGGTCTTTATCACCCCAATCCCTCCACCTTTGGTCTCCGTTTATCATCGTCGTCA
TGCCAGCATATCCATTCTATCTATCCCTGTGATCATGATGCTCTCTACGAGTCTTT
■■Homology search results ■■ -
sp_hit_id Q38953
Definition sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana
Align length 14
Score (bit) 34.3
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918264|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_D11.
         (356 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-depen...    34   0.20 
sp|A5D2S6|PNP_PELTS Polyribonucleotide nucleotidyltransferase OS...    30   2.9  
sp|Q9XIK4|U202A_ARATH UPF0202 protein At1g10490 OS=Arabidopsis t...    30   3.8  
sp|Q7VL91|PNP_HAEDU Polyribonucleotide nucleotidyltransferase OS...    30   5.0  
sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyost...    30   5.0  
sp|Q6LUI8|PNP_PHOPR Polyribonucleotide nucleotidyltransferase OS...    29   8.5  
sp|Q65VB0|PNP_MANSM Polyribonucleotide nucleotidyltransferase OS...    29   8.5  
sp|B0UTJ5|PNP_HAES2 Polyribonucleotide nucleotidyltransferase OS...    29   8.5  
sp|Q0I2T0|PNP_HAES1 Polyribonucleotide nucleotidyltransferase OS...    29   8.5  
sp|Q9LMI3|ADSL5_ARATH Delta-9 desaturase-like 5 protein OS=Arabi...    29   8.5  

>sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor
           ATP-dependent RNA helicase OS=Arabidopsis thaliana
           GN=At3g26560 PE=2 SV=2
          Length = 1168

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -2

Query: 64  DYIPKDLNRPWEDP 23
           D IPKDLNRPWEDP
Sbjct: 450 DSIPKDLNRPWEDP 463



 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -3

Query: 231 GINCKNSSYVYCGRVSRVMDYGCFV 157
           G N      VY GRV+RVMD GCFV
Sbjct: 207 GANEPELYQVYKGRVTRVMDAGCFV 231


>sp|A5D2S6|PNP_PELTS Polyribonucleotide nucleotidyltransferase
           OS=Pelotomaculum thermopropionicum (strain DSM 13744 /
           JCM 10971 / SI) GN=pnp PE=3 SV=1
          Length = 734

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -3

Query: 204 VYCGRVSRVMDYGCFV*LV 148
           +Y GRV+R+ D+GCFV ++
Sbjct: 635 IYTGRVTRITDFGCFVEII 653


>sp|Q9XIK4|U202A_ARATH UPF0202 protein At1g10490 OS=Arabidopsis
           thaliana GN=At1g10490 PE=2 SV=1
          Length = 1058

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = +3

Query: 117 QIVSLHHFESPQVTQSNHNP*HVKPYHNKHXXXXYN------*CPFKELGSLSPQSLHLW 278
           QIV+LHH  S  V +S  NP  +  Y N+     +N          KE G L P+ L  +
Sbjct: 35  QIVNLHHILSKSVVKS--NPSVLWCYKNRLDISSHNKKRAKQLKKMKERGQLDPEKLDAF 92

Query: 279 SPFIIVVMPAYPFY 320
           S F+ VV   +  Y
Sbjct: 93  SLFLDVVDVTHCLY 106


>sp|Q7VL91|PNP_HAEDU Polyribonucleotide nucleotidyltransferase
           OS=Haemophilus ducreyi GN=pnp PE=3 SV=1
          Length = 712

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = -3

Query: 204 VYCGRVSRVMDYGCFV*LVG 145
           +Y G+VSRV+D+G FV ++G
Sbjct: 623 IYTGKVSRVVDFGAFVTILG 642


>sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8
           OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1
          Length = 1160

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 204 VYCGRVSRVMDYGCFV*LVG 145
           +Y G+VS + DYGCFV L G
Sbjct: 204 IYDGKVSSINDYGCFVTLEG 223


>sp|Q6LUI8|PNP_PHOPR Polyribonucleotide nucleotidyltransferase
           OS=Photobacterium profundum GN=pnp PE=3 SV=1
          Length = 707

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -3

Query: 204 VYCGRVSRVMDYGCFV*LVGFQSDAMTQSALAK 106
           +Y G+V R++D+G FV ++G +   +  S +A+
Sbjct: 623 IYTGKVMRIVDFGAFVSVIGAKEGLVHISQIAQ 655


>sp|Q65VB0|PNP_MANSM Polyribonucleotide nucleotidyltransferase
           OS=Mannheimia succiniciproducens (strain MBEL55E) GN=pnp
           PE=3 SV=1
          Length = 704

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 204 VYCGRVSRVMDYGCFV*LVGFQSDAMTQSALAK 106
           VY G+V+R+ D+G FV +VG +   +  S +A+
Sbjct: 623 VYTGKVTRLADFGAFVAIVGNKEGLVHISQIAE 655


>sp|B0UTJ5|PNP_HAES2 Polyribonucleotide nucleotidyltransferase
           OS=Haemophilus somnus (strain 2336) GN=pnp PE=3 SV=1
          Length = 713

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 204 VYCGRVSRVMDYGCFV*LVGFQSDAMTQSALAK 106
           VY G+V+R+ D+G FV LVG +   +  S +A+
Sbjct: 623 VYKGKVTRLADFGAFVALVGNKEGLVHISQIAE 655


>sp|Q0I2T0|PNP_HAES1 Polyribonucleotide nucleotidyltransferase
           OS=Haemophilus somnus (strain 129Pt) GN=pnp PE=3 SV=1
          Length = 713

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 204 VYCGRVSRVMDYGCFV*LVGFQSDAMTQSALAK 106
           VY G+V+R+ D+G FV LVG +   +  S +A+
Sbjct: 623 VYKGKVTRLADFGAFVALVGNKEGLVHISQIAE 655


>sp|Q9LMI3|ADSL5_ARATH Delta-9 desaturase-like 5 protein
           OS=Arabidopsis thaliana GN=At1g06360 PE=2 SV=1
          Length = 299

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = -1

Query: 197 VVGFHVSWIMVALCNLW 147
           V+G+HV+W++ + C++W
Sbjct: 203 VIGYHVTWLVNSACHIW 219
tr_hit_id Q6K4U8
Definition tr|Q6K4U8|Q6K4U8_ORYSJ Putative RNA helicase OS=Oryza sativa subsp. japonica
Align length 29
Score (bit) 35.4
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918264|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_D11.
         (356 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6K4U8|Q6K4U8_ORYSJ Putative RNA helicase OS=Oryza sativa sub...    35   1.5  
tr|A3A5W2|A3A5W2_ORYSJ Putative uncharacterized protein OS=Oryza...    35   1.5  
tr|A2X3S5|A2X3S5_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.5  
tr|Q179V7|Q179V7_AEDAE Adamts-7 OS=Aedes aegypti GN=AAEL005485 P...    35   2.5  
tr|Q5Z9X4|Q5Z9X4_ORYSJ Os06g0343100 protein OS=Oryza sativa subs...    34   3.2  
tr|Q0WLB6|Q0WLB6_ARATH Putative ATP-dependent RNA helicase OS=Ar...    34   3.2  
tr|B8BR58|B8BR58_THAPS ATP dependent RNA helicase OS=Thalassiosi...    34   3.2  
tr|B8B1N7|B8B1N7_ORYSI Putative uncharacterized protein OS=Oryza...    34   3.2  
tr|A5AQH3|A5AQH3_VITVI Putative uncharacterized protein OS=Vitis...    34   3.2  
tr|A3BBG7|A3BBG7_ORYSJ Putative uncharacterized protein OS=Oryza...    34   3.2  
tr|B3L263|B3L263_PLAKH RNA helicase, putative OS=Plasmodium know...    33   5.5  
tr|Q8IJA4|Q8IJA4_PLAF7 RNA helicase, putative OS=Plasmodium falc...    33   7.2  
tr|A5KDZ6|A5KDZ6_PLAVI RNA helicase, putative OS=Plasmodium viva...    33   7.2  

>tr|Q6K4U8|Q6K4U8_ORYSJ Putative RNA helicase OS=Oryza sativa subsp.
           japonica GN=OSJNBa0010K08.27 PE=4 SV=1
          Length = 1240

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = -2

Query: 109 QIEERVERAATKDHHDYIPKDLNRPWEDP 23
           ++ E+ +RA      D IPKDLNRPWEDP
Sbjct: 511 EVREQEQRAML----DSIPKDLNRPWEDP 535


>tr|A3A5W2|A3A5W2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_006184 PE=4 SV=1
          Length = 1203

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = -2

Query: 109 QIEERVERAATKDHHDYIPKDLNRPWEDP 23
           ++ E+ +RA      D IPKDLNRPWEDP
Sbjct: 511 EVREQEQRAML----DSIPKDLNRPWEDP 535


>tr|A2X3S5|A2X3S5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06862 PE=4 SV=1
          Length = 1240

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = -2

Query: 109 QIEERVERAATKDHHDYIPKDLNRPWEDP 23
           ++ E+ +RA      D IPKDLNRPWEDP
Sbjct: 511 EVREQEQRAML----DSIPKDLNRPWEDP 535


>tr|Q179V7|Q179V7_AEDAE Adamts-7 OS=Aedes aegypti GN=AAEL005485 PE=4
            SV=1
          Length = 1037

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = -2

Query: 169  WLLC-VTCGLSK*CNDTICFSQIEERV-----ERAATKDHHDYIPKDLNRPWEDPC 20
            W LC VTCG  K   D+IC+ + E  V     E+ A    H+ + +D N   EDPC
Sbjct: 898  WSLCSVTCGGGKQHRDSICYHRGEGMVDDSFCEQNAHNKRHERVSRDCN---EDPC 950


>tr|Q5Z9X4|Q5Z9X4_ORYSJ Os06g0343100 protein OS=Oryza sativa subsp.
           japonica GN=P0459H02.22 PE=4 SV=1
          Length = 1084

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -2

Query: 64  DYIPKDLNRPWEDP 23
           D IPKDLNRPWEDP
Sbjct: 366 DSIPKDLNRPWEDP 379


>tr|Q0WLB6|Q0WLB6_ARATH Putative ATP-dependent RNA helicase
           OS=Arabidopsis thaliana GN=At3g26560 PE=2 SV=1
          Length = 767

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -2

Query: 64  DYIPKDLNRPWEDP 23
           D IPKDLNRPWEDP
Sbjct: 106 DSIPKDLNRPWEDP 119


>tr|B8BR58|B8BR58_THAPS ATP dependent RNA helicase OS=Thalassiosira
           pseudonana CCMP1335 GN=ATH1 PE=4 SV=1
          Length = 1191

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -2

Query: 64  DYIPKDLNRPWEDP 23
           D IPKDLNRPWEDP
Sbjct: 472 DSIPKDLNRPWEDP 485


>tr|B8B1N7|B8B1N7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22861 PE=4 SV=1
          Length = 921

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -2

Query: 64  DYIPKDLNRPWEDP 23
           D IPKDLNRPWEDP
Sbjct: 203 DSIPKDLNRPWEDP 216


>tr|A5AQH3|A5AQH3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_005515 PE=4 SV=1
          Length = 1162

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -2

Query: 64  DYIPKDLNRPWEDP 23
           D IPKDLNRPWEDP
Sbjct: 466 DSIPKDLNRPWEDP 479


>tr|A3BBG7|A3BBG7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_020389 PE=4 SV=1
          Length = 1052

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -2

Query: 64  DYIPKDLNRPWEDP 23
           D IPKDLNRPWEDP
Sbjct: 334 DSIPKDLNRPWEDP 347