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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918269
Clone id YMU001_000111_E04
Library
Length 533
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000111_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGCTCACACAGGTGGTACTCTAGAGGGTCTGCCCTCTGGAAGGCGGAAGGAGAATCAGGA
CTATGCTGCAGCAACCACGGGTCGTTGGCAGGGCGACTTCTCCTCTGGACAAGGGAAGCA
AGGCGGTTACTCGGGATATGGAGGTGGCCAGCGACAAGGCTATGGCGGAGGAAGGTCAGG
ACAAGGCAGAGGCGGTGGAACAGGAGGTGGTTTTAGAGACATGCGGTCTAATCAAGGAAA
CCCTCGAGGCGGTGCTTCGTACAATTCTGTTTTTCAAAGCACAAGATATCAAGATGCTTA
CAGTAGTGTTGGTAGAACTCCTTATCAAACGGGCCCTACTTCAGGGAGGGGGTCCCAGAC
AGATGGTACTGGTCGGATGGTAAGCCTGACGAGGTCAGGACGGTTTTGAAGGATATTGGT
TTTGTCATTTGTAGGCCGTCCATTTTGAAAGAGCTGTAAGTTAGTCTTGTTGAGGTGAGG
GTGAGTTGTTCAATGAGGCTAGGCTGTGAAGAGAGCTGGCATTCATTTCTAGT
■■Homology search results ■■ -
sp_hit_id Q8ETY7
Definition sp|Q8ETY7|RPOC_OCEIH DNA-directed RNA polymerase subunit beta' OS=Oceanobacillus iheyensis
Align length 108
Score (bit) 32.3
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918269|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_E04.
         (533 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8ETY7|RPOC_OCEIH DNA-directed RNA polymerase subunit beta' O...    32   1.5  
sp|Q68XM7|RPOC_RICTY DNA-directed RNA polymerase subunit beta' O...    31   3.3  
sp|Q9RH40|RPOC_RICCN DNA-directed RNA polymerase subunit beta' O...    31   3.3  
sp|B0SUP8|RPOC_CAUSK DNA-directed RNA polymerase subunit beta' O...    30   9.5  
sp|Q5ANP2|NACA_CANAL Nascent polypeptide-associated complex subu...    30   9.5  

>sp|Q8ETY7|RPOC_OCEIH DNA-directed RNA polymerase subunit beta'
            OS=Oceanobacillus iheyensis GN=rpoC PE=3 SV=1
          Length = 1203

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 31/108 (28%), Positives = 51/108 (47%)
 Frame = +3

Query: 54   IRTMLQQPRVVGRATSPLDKGSKAVTRDMEVASDKAMAEEGQDKAEAVEQEVVLETCGLI 233
            +R ML++ RVV    + +  GS       + A+ K + EEG+    A  + V+L   G+ 
Sbjct: 1070 VRQMLRKIRVVSSGDTEVLPGSLLELHQFKEANHKVLMEEGE---PATGRPVLL---GIT 1123

Query: 234  KETLEAVLRTILFFKAQDIKMLTVVLVELLIKRALLQGGGPRQMVLVG 377
            K +LE    T  F  A   +  T VL +  IK    +  G ++ V++G
Sbjct: 1124 KASLE----TDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1167


>sp|Q68XM7|RPOC_RICTY DNA-directed RNA polymerase subunit beta'
            OS=Rickettsia typhi GN=rpoC PE=3 SV=1
          Length = 1372

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 33/108 (30%), Positives = 52/108 (48%)
 Frame = +3

Query: 54   IRTMLQQPRVVGRATSPLDKGSKAVTRDMEVASDKAMAEEGQDKAEAVEQEVVLETCGLI 233
            IR MLQ+  V     + L  G K    + +  ++KAM + G   AEA   +++L+  G+ 
Sbjct: 1249 IRQMLQKVEVTDSGGTTLLVGEKIDRHEFDEINEKAM-KNGLKPAEA---QLILQ--GIT 1302

Query: 234  KETLEAVLRTILFFKAQDIKMLTVVLVELLIKRALLQGGGPRQMVLVG 377
            K    A L+T  F  A   +  T VL E  I   + +  G ++ V+VG
Sbjct: 1303 K----ASLQTRSFISAASFQETTRVLTEAAIAGKVDKLRGLKENVIVG 1346


>sp|Q9RH40|RPOC_RICCN DNA-directed RNA polymerase subunit beta'
            OS=Rickettsia conorii GN=rpoC PE=3 SV=2
          Length = 1372

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 33/108 (30%), Positives = 52/108 (48%)
 Frame = +3

Query: 54   IRTMLQQPRVVGRATSPLDKGSKAVTRDMEVASDKAMAEEGQDKAEAVEQEVVLETCGLI 233
            IR MLQ+  V     + L  G K    + +  ++KAM + G   AEA   +++L+  G+ 
Sbjct: 1249 IRQMLQKVEVTDSGGTTLLVGEKIDRHEFDEINEKAM-KNGLKPAEA---QLILQ--GIT 1302

Query: 234  KETLEAVLRTILFFKAQDIKMLTVVLVELLIKRALLQGGGPRQMVLVG 377
            K    A L+T  F  A   +  T VL E  I   + +  G ++ V+VG
Sbjct: 1303 K----ASLQTRSFISAASFQETTRVLTEAAIAGKVDKLRGLKENVIVG 1346


>sp|B0SUP8|RPOC_CAUSK DNA-directed RNA polymerase subunit beta'
            OS=Caulobacter sp. (strain K31) GN=rpoC PE=3 SV=1
          Length = 1394

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 31/108 (28%), Positives = 48/108 (44%)
 Frame = +3

Query: 54   IRTMLQQPRVVGRATSPLDKGSKAVTRDMEVASDKAMAEEGQDKAEAVEQEVVLETCGLI 233
            +R MLQ+  ++    + L KG      +  V  D+A+A  G+    A  Q V+L   G+ 
Sbjct: 1253 VRQMLQKVEILEPGDTGLIKGDHLDKPEFYVEQDRAVARGGR---PATTQPVLL---GIT 1306

Query: 234  KETLEAVLRTILFFKAQDIKMLTVVLVELLIKRALLQGGGPRQMVLVG 377
            K    A L+T  F  A   +  T VL E  +        G ++ V+VG
Sbjct: 1307 K----ASLQTKSFISAASFQETTRVLTEASVHGKTDTLEGLKENVIVG 1350


>sp|Q5ANP2|NACA_CANAL Nascent polypeptide-associated complex subunit
           alpha OS=Candida albicans GN=EGD2 PE=3 SV=1
          Length = 178

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +3

Query: 108 DKGSKAVTRDMEVAS--DKAMAEEGQDKAEAVEQEVVLETCGLIKETLEAVLRTILFFKA 281
           DK  +A+T D+E AS  DK   +E +D+ E       ++  GL  + +E V+      +A
Sbjct: 105 DKSPEAITADLEKASLGDKKAEDEEEDEGE-------IDETGLDPKDIEIVVEQTQVSRA 157

Query: 282 QDIKML 299
           + +K L
Sbjct: 158 KAVKAL 163
tr_hit_id A9SZ44
Definition tr|A9SZ44|A9SZ44_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 135
Score (bit) 79.3
E-value 1.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918269|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_E04.
         (533 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SZ44|A9SZ44_PHYPA Predicted protein OS=Physcomitrella paten...    79   1e-13
tr|A7PW28|A7PW28_VITVI Chromosome chr8 scaffold_34, whole genome...    57   8e-07
tr|A5C628|A5C628_VITVI Putative uncharacterized protein OS=Vitis...    49   1e-04
tr|Q6YNS0|Q6YNS0_PRUAV Putative translation-initiation factor 3 ...    48   4e-04
tr|A9SAG5|A9SAG5_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.007
tr|B4FNU8|B4FNU8_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.015
tr|A9RFE0|A9RFE0_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.026
tr|B8AGX9|B8AGX9_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.17 
tr|A6U5J2|A6U5J2_SINMW Transporter, hydrophobe/amphiphile efflux...    35   1.8  
tr|A7F9H2|A7F9H2_SCLS1 Predicted protein OS=Sclerotinia scleroti...    35   2.4  
tr|Q92SH0|Q92SH0_RHIME Probable multidrug-efflux system transmem...    35   3.2  
tr|A0YJJ8|A0YJJ8_9CYAN Putative uncharacterized protein OS=Lyngb...    34   4.1  
tr|A6BF60|A6BF60_9FIRM Putative uncharacterized protein OS=Dorea...    34   5.4  
tr|A4EUV8|A4EUV8_9RHOB Acetyl-CoA acyltransferase/thiolase famil...    34   5.4  
tr|Q6Z720|Q6Z720_ORYSJ Putative Eukaryotic translation initiatio...    33   7.0  
tr|Q0E4E1|Q0E4E1_ORYSJ Os02g0123300 protein OS=Oryza sativa subs...    33   7.0  
tr|A5EVA7|A5EVA7_DICNV Tetrapyrrole methylase family protein OS=...    33   9.2  
tr|Q4Q2U2|Q4Q2U2_LEIMA Putative uncharacterized protein OS=Leish...    33   9.2  
tr|A4IA29|A4IA29_LEIIN Putative uncharacterized protein (Fragmen...    33   9.2  
tr|A2DBL6|A2DBL6_TRIVA Glycosyl hydrolase, family 2, putative OS...    33   9.2  

>tr|A9SZ44|A9SZ44_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_190037 PE=4 SV=1
          Length = 955

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 58/135 (42%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
 Frame = +2

Query: 11   GGTLEGLPSGRR-KENQDYAAATTGRWQGDFSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 187
            GG LEG+  GRR ++ QDYA A  GR  GDF                             
Sbjct: 825  GGGLEGM--GRRNRDTQDYADAAGGRRGGDFGGGRGGNKGGRGGRGGRDNFGGGRGGRDN 882

Query: 188  XXXXXXXXFRDMRSNQGNPRGGASYNSVFQSTRYQDAYSSVGRTPYQTGPTS---GRGSQ 358
                     R      G   GG  Y+S +QSTRYQDAYSSVGRTPYQTGPT+    RG Q
Sbjct: 883  NQGGYNNYNRG-----GQGGGGRGYSSGYQSTRYQDAYSSVGRTPYQTGPTAAGINRGQQ 937

Query: 359  -TDGTGRMVSLTRSG 400
              D  GRMVSL+R G
Sbjct: 938  AADAGGRMVSLSRMG 952


>tr|A7PW28|A7PW28_VITVI Chromosome chr8 scaffold_34, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025451001
           PE=4 SV=1
          Length = 605

 Score = 56.6 bits (135), Expect = 8e-07
 Identities = 48/133 (36%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
 Frame = +2

Query: 11  GGTLEGLPSGRRKENQDYAAATT--GRWQGDFSXXXXXXXXXXXXXXXXXXXXXXXXXXX 184
           GG L+ LP  RR++ QDYA A +  G+WQ +FS                           
Sbjct: 487 GGGLD-LPL-RRRDGQDYAGAASVGGKWQDNFSFSQGRQGGVRTGYGVGGRPLGPGSSAG 544

Query: 185 XXXXXXXXXFRDMRSNQGNPRGGASYNSVFQSTRYQDAYSSVGRTPYQTGPTSGRGSQTD 364
                        R   G  RG   Y+  +QSTRYQDA  + GRT YQT  ++ RGSQ D
Sbjct: 545 TFS----------RDRGGQSRGTGGYSGGYQSTRYQDA--AYGRTAYQTS-SAVRGSQMD 591

Query: 365 GTGRMVSLTRSGR 403
            + RMVSL R  R
Sbjct: 592 TSTRMVSLNRGVR 604


>tr|A5C628|A5C628_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_038366 PE=4 SV=1
          Length = 1047

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 43/125 (34%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
 Frame = +2

Query: 11   GGTLEGLPSGRRKENQDYAAATT--GRWQGDFSXXXXXXXXXXXXXXXXXXXXXXXXXXX 184
            GG L+ LP  RR++ QDYA A +  G+WQ +FS                           
Sbjct: 827  GGGLD-LPL-RRRDGQDYAGAASVGGKWQDNFSFSQGRQGGVRTGYGVGGRPLGPGSSAG 884

Query: 185  XXXXXXXXXFRDMRSNQGNPRGGASYNSVFQSTRYQDAYSSVGRTPYQTGPTSGRGSQTD 364
                         R   G  RG   Y+  +QSTRYQDA  + GRT YQT  ++ RGSQ D
Sbjct: 885  TFS----------RDRGGQSRGTGGYSGGYQSTRYQDA--AYGRTAYQTS-SAVRGSQMD 931

Query: 365  GTGRM 379
             + RM
Sbjct: 932  TSTRM 936


>tr|Q6YNS0|Q6YNS0_PRUAV Putative translation-initiation factor 3
            subunit OS=Prunus avium PE=2 SV=1
          Length = 934

 Score = 47.8 bits (112), Expect = 4e-04
 Identities = 51/144 (35%), Positives = 59/144 (40%), Gaps = 10/144 (6%)
 Frame = +2

Query: 2    AHTGGTLEGLPSGRRKENQDYAAATT---GRWQGDFSXXXXXXXXXXXXXXXXXXXXXXX 172
            A  GG    LP  RR++NQDYA  T    GRWQ +                         
Sbjct: 813  ARIGGGGLDLPQ-RRRDNQDYATGTAAGGGRWQDNNLSFNQGRQGGGSGRAGYNTGG--- 868

Query: 173  XXXXXXXXXXXXXFRDMRSNQGNPRGGAS------YNSVFQSTRYQDA-YSSVGRTPYQT 331
                             RS   N  GG S      Y    Q++RYQDA Y+  GRT YQT
Sbjct: 869  -----------------RSFNQNAGGGYSRDRAGQYRGSGQNSRYQDAAYAGSGRTGYQT 911

Query: 332  GPTSGRGSQTDGTGRMVSLTRSGR 403
            GP + RGSQ D + RMVSL R  R
Sbjct: 912  GP-AARGSQ-DTSTRMVSLHRGLR 933


>tr|A9SAG5|A9SAG5_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_210266 PE=4 SV=1
          Length = 914

 Score = 43.5 bits (101), Expect = 0.007
 Identities = 44/132 (33%), Positives = 49/132 (37%), Gaps = 2/132 (1%)
 Frame = +2

Query: 11   GGTLEGLPSGRR-KENQDYAAATTGRWQGDFSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 187
            GG LEGL  GRR KE QDYA A  GR  GDF                             
Sbjct: 810  GGGLEGL--GRRNKEGQDYADAAGGRRGGDFGGNRSGFRNNRGG---------------- 851

Query: 188  XXXXXXXXFRDMRSNQGNPRGGASYNSVFQSTRYQDAYSSVGRTPYQTGPTSGRG-SQTD 364
                     R  R NQ   RG       F +        + GR+ Y T   + RG  Q D
Sbjct: 852  ---------RGGRDNQAGGRGARDNQGGFNNYN----RGNQGRSGYNTSGINNRGVQQAD 898

Query: 365  GTGRMVSLTRSG 400
              GRMVSL+R G
Sbjct: 899  AGGRMVSLSRVG 910


>tr|B4FNU8|B4FNU8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 159

 Score = 42.4 bits (98), Expect = 0.015
 Identities = 47/134 (35%), Positives = 53/134 (39%)
 Frame = +2

Query: 2   AHTGGTLEGLPSGRRKENQDYAAATTGRWQGDFSXXXXXXXXXXXXXXXXXXXXXXXXXX 181
           A TGGTLEG+P  RR E QD      G+WQ +F                           
Sbjct: 52  ARTGGTLEGVPPRRRGEGQD----NMGKWQDNFVSSQGRQGGGNRFGYSGRGAISGQSGG 107

Query: 182 XXXXXXXXXXFRDMRSNQGNPRGGASYNSVFQSTRYQDAYSSVGRTPYQTGPTSGRGSQT 361
                      RD R NQG  RGG  Y  V   +R+QDA       P      SGRG   
Sbjct: 108 GHQ--------RD-RGNQGY-RGG--YGGV---SRFQDARGRNQSIP------SGRGG-- 144

Query: 362 DGTGRMVSLTRSGR 403
           DG  RMV+L R GR
Sbjct: 145 DGGARMVNLNRMGR 158


>tr|A9RFE0|A9RFE0_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_65385 PE=4 SV=1
          Length = 898

 Score = 41.6 bits (96), Expect = 0.026
 Identities = 46/135 (34%), Positives = 50/135 (37%), Gaps = 5/135 (3%)
 Frame = +2

Query: 11   GGTLEGLPSGRR-KENQDYAAATTGRWQGDFSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 187
            GG LE +  GRR K+ QDYA A  GR  GDF                             
Sbjct: 803  GGGLESM--GRRNKDGQDYADAVGGRRGGDFGGGRGSFRSSRGGR--------------- 845

Query: 188  XXXXXXXXFRDMRSNQGNPRGGASYNSVFQSTRYQDAYSSVGRTPYQTGPTSG---RG-S 355
                        R NQG  RGG            Q  YS+     Y  GPTSG   RG  
Sbjct: 846  ------------RDNQGGGRGGRDN---------QGGYSN-----YNRGPTSGGINRGVQ 879

Query: 356  QTDGTGRMVSLTRSG 400
            Q D  GRMVSL+R G
Sbjct: 880  QADAAGRMVSLSRVG 894


>tr|B8AGX9|B8AGX9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05653 PE=4 SV=1
          Length = 744

 Score = 38.9 bits (89), Expect = 0.17
 Identities = 39/138 (28%), Positives = 49/138 (35%), Gaps = 4/138 (2%)
 Frame = +2

Query: 2   AHTGGTLEGLPSGRRKENQDYAAATTGRWQGDFSXXXXXXXXXXXXXXXXXXXXXXXXXX 181
           A TGGT EG P  RR + QD  ++  G+WQ +F                           
Sbjct: 636 AKTGGTFEGAPPRRRGDAQD--SSNLGKWQENFVSSQGRQGGGRSGYSG----------- 682

Query: 182 XXXXXXXXXXFRDMRSNQGNPRGGASYNSVFQSTRYQDAYSSVGRTPYQTGPTSGRGSQT 361
                             G+ RGG  Y     S   +  Y   G + +Q G  S  GS  
Sbjct: 683 ---------------RGGGSGRGGGGYQRDRGSQGSRGGYG--GGSRFQDGGRSRTGSMA 725

Query: 362 ----DGTGRMVSLTRSGR 403
               DG  RMVSL R+GR
Sbjct: 726 KGGGDGGARMVSLNRAGR 743


>tr|A6U5J2|A6U5J2_SINMW Transporter, hydrophobe/amphiphile efflux-1
           (HAE1) family OS=Sinorhizobium medicae (strain WSM419)
           GN=Smed_0062 PE=4 SV=1
          Length = 1061

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 25/90 (27%), Positives = 45/90 (50%)
 Frame = +3

Query: 54  IRTMLQQPRVVGRATSPLDKGSKAVTRDMEVASDKAMAEEGQDKAEAVEQEVVLETCGLI 233
           +R++L     VG        GS A+     V   K MAE  Q   E V+ E+V +T   +
Sbjct: 280 LRSLLDNKAAVGMGVFQAP-GSNAIEISENV--HKVMAELKQTMPEGVDYEIVYDTTQFV 336

Query: 234 KETLEAVLRTILFFKAQDIKMLTVVLVELL 323
           + ++E+V+ T+L    + I ++ +V++  L
Sbjct: 337 RASIESVIHTLL----EAIALVVIVVIVFL 362


>tr|A7F9H2|A7F9H2_SCLS1 Predicted protein OS=Sclerotinia
           sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
           GN=SS1G_14253 PE=4 SV=1
          Length = 189

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
 Frame = +3

Query: 48  RRIRTMLQQPRVVGRATSPLDKGSKAVTRDMEVASDKAMAE--EGQDKAEAVEQEVVLET 221
           + IR ML+  +     T+    G K +T+D+E+AS +      EG+D  E + + VVL+ 
Sbjct: 46  QHIRNMLRYTQSAKEKTTD---GKKKITKDLELASTRLRVGGGEGRDGKERMRKVVVLKK 102

Query: 222 CGLIKETLEAVLRTI---LFFKAQDIKMLTVVLVELLIKRALLQGGGP 356
             L+ E+ E  L T    L  K ++++         ++KR   + G P
Sbjct: 103 SILVHESYEKDLDTCAVPLRIKEEELRS--------ILKRQAWENGNP 142