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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918274
Clone id YMU001_000111_E10
Library
Length 515
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000111_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAATTGAATTGTACTCGAAAAGTTACCCTGATTATTCTCACCAAGAATAATTCTTTTTAA
AGCTAACAAGTTTGTACAATATTTAGGCACCGCCTACACCGAGGTCAAGCAAGATTTACG
GATATAATAGGACAAGCAAAAAAGGCTGCAGATAAACATCAACAGCAAATTGACATCAAG
CTTGGCGATTGGGTTTTACCTCCGTTTGAGAAACCTAGAGTAAGAAAAATGATAGGCAAG
GAACGACCATGTCGAGAGCTGTGGAGACGATTCTATGATCCCTTTAAAGTTATGATCGGA
TAAATGTTTAAACTCCACCTCCCACACCATTGGTGGTTTCATAATGCCTTCCATGTTAGT
TTGCTTAGACCATTCAAGGGTGACTCTTCCTCAGAGCCTTTGGACGATCCACGGTAGATT
AGATTGAAGAGACCTTTGTTCTAGAGCAAATCCTTTCAAATAAGGATAGAACAAGCAATT
ATGAGAAGTATTCGAGGCAAACGACTCATCGAATT
■■Homology search results ■■ -
sp_hit_id P16871
Definition sp|P16871|IL7RA_HUMAN Interleukin-7 receptor subunit alpha OS=Homo sapiens
Align length 93
Score (bit) 32.3
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918274|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_E10.
         (515 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P16871|IL7RA_HUMAN Interleukin-7 receptor subunit alpha OS=Ho...    32   1.3  
sp|O95838|GLP2R_HUMAN Glucagon-like peptide 2 receptor OS=Homo s...    32   1.8  
sp|Q6L438|R1A6_SOLDE Putative late blight resistance protein hom...    31   3.0  
sp|Q60CZ8|R1A10_SOLDE Putative late blight resistance protein ho...    31   3.0  
sp|P96662|YDEE_BACSU Uncharacterized HTH-type transcriptional re...    30   8.7  
sp|Q6L439|R1A4_SOLDE Putative late blight resistance protein hom...    30   8.7  

>sp|P16871|IL7RA_HUMAN Interleukin-7 receptor subunit alpha OS=Homo
           sapiens GN=IL7R PE=1 SV=2
          Length = 459

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 24/93 (25%), Positives = 45/93 (48%)
 Frame = -3

Query: 384 VTLEWSKQTNMEGIMKPPMVWEVEFKHLSDHNFKGIIESSPQLSTWSFLAYHFSYSRFLK 205
           V L  +K T ++  ++P  ++E++ + + DH FKG        S WS  +Y+F       
Sbjct: 181 VNLSSTKLTLLQRKLQPAAMYEIKVRSIPDHYFKGF------WSEWS-PSYYFRTPEIN- 232

Query: 204 RR*NPIAKLDVNLLLMFICSLFCLSYYIRKSCL 106
              N   ++D  LL + I S F ++  +  +C+
Sbjct: 233 ---NSSGEMDPILLTISILSFFSVALLVILACV 262


>sp|O95838|GLP2R_HUMAN Glucagon-like peptide 2 receptor OS=Homo
           sapiens GN=GLP2R PE=2 SV=1
          Length = 553

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 29/108 (26%), Positives = 43/108 (39%)
 Frame = -3

Query: 423 SNLPWIVQRL*GRVTLEWSKQTNMEGIMKPPMVWEVEFKHLSDHNFKGIIESSPQLSTWS 244
           S LPW  +   GR       Q   + I     +W+ + +   +H+FK  ++    LST  
Sbjct: 120 SYLPWWSEESSGRAYRHCLAQGTWQTIENATDIWQDDSECSENHSFKQNVDRYALLSTLQ 179

Query: 243 FLAYHFSYSRFLKRR*NPIAKLDVNLLLMFICSLFCLSYYIRKSCLTS 100
            L Y   YS  L      I+      LL+F+  L C   YI  +   S
Sbjct: 180 -LMYTVGYSFSL------ISLFLALTLLLFLRKLHCTRNYIHMNLFAS 220


>sp|Q6L438|R1A6_SOLDE Putative late blight resistance protein homolog
            R1A-6 OS=Solanum demissum GN=R1A-6 PE=3 SV=2
          Length = 1306

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
 Frame = -3

Query: 465  PYLKGFA--LEQRSLQSNLP--WIVQRL*GRVTLEWSKQTNMEGIMKPPMVWE-VEFKHL 301
            PYL+ F+  ++Q S+ S++   W ++ L     L      +   ++ P  VW+ V+ +HL
Sbjct: 958  PYLRYFSALIDQNSIPSSISNLWNLETL----ILNRRSADSHNRVLLPSTVWDMVKLRHL 1013

Query: 300  SDHNF-----KGIIESSPQLSTWSFLAYHFSYSRFLKRR*NPIAKLDVNLLLMFICSLFC 136
               NF     K ++++SP L     L+Y +    F + +   +       L    C + C
Sbjct: 1014 HIPNFSPENKKALLKNSPNLDDLETLSYPY----FARVKDAELMLRKTPNLRKLTCKVKC 1069

Query: 135  LSY 127
            L Y
Sbjct: 1070 LEY 1072


>sp|Q60CZ8|R1A10_SOLDE Putative late blight resistance protein homolog
            R1A-10 OS=Solanum demissum GN=R1A-10 PE=3 SV=1
          Length = 1306

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
 Frame = -3

Query: 465  PYLKGFA--LEQRSLQSNLP--WIVQRL*GRVTLEWSKQTNMEGIMKPPMVWE-VEFKHL 301
            PYL+ F+  ++Q S+ S++   W ++ L     L      +   ++ P  VW+ V+ +HL
Sbjct: 958  PYLRYFSALIDQNSIPSSISNLWNLETL----ILNRRSADSHNRVLLPSTVWDMVKLRHL 1013

Query: 300  SDHNF-----KGIIESSPQLSTWSFLAYHFSYSRFLKRR*NPIAKLDVNLLLMFICSLFC 136
               NF     K ++++SP L     L+Y +    F + +   +       L    C + C
Sbjct: 1014 HIPNFSPENKKALLKNSPNLDDLETLSYPY----FARVKDAELMLRKTPNLRKLTCKVKC 1069

Query: 135  LSY 127
            L Y
Sbjct: 1070 LEY 1072


>sp|P96662|YDEE_BACSU Uncharacterized HTH-type transcriptional
           regulator ydeE OS=Bacillus subtilis GN=ydeE PE=4 SV=1
          Length = 290

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 414 PWIVQRL*GRVTLEWSKQTNMEGIMKPPMVWEVEFKHLSDHNFKGII 274
           P  +Q + GR+  EW   +N E I  P ++W  E K ++  +FK  I
Sbjct: 238 PDTLQEVWGRIYSEWFPSSNYEQIEGPEILWN-EHKDVTSPSFKSEI 283


>sp|Q6L439|R1A4_SOLDE Putative late blight resistance protein homolog
            R1A-4 OS=Solanum demissum GN=R1A-4 PE=5 SV=2
          Length = 1244

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
 Frame = -3

Query: 426  QSNLPWIVQRL*GRVTLEWSKQTNMEGIMKPPMVWEVE------FKHLSDHNFKGIIESS 265
            Q+++P  +  L    TL  ++++ +  I+ P  VW++         + S  N K ++++S
Sbjct: 968  QNSIPSSISNLWNLETLILNRRSVVHKILLPSTVWDMVKLRFLFIPNFSPENKKALLKNS 1027

Query: 264  PQLSTWSFLAYHFSYSRFLKRR*NPIAKLDVNLLLMFICSLFCLSY 127
            P L     L+Y +    F + +   +       L    C + CL Y
Sbjct: 1028 PNLDDLETLSYPY----FARVKDAELMLRKTPNLRKLTCKVKCLEY 1069
tr_hit_id B2ATK7
Definition tr|B2ATK7|B2ATK7_PODAN Predicted CDS Pa_1_16180 (Gag-pol polyprotein) OS=Podospora anserina
Align length 77
Score (bit) 46.6
E-value 0.0007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918274|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_E10.
         (515 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2ATK7|B2ATK7_PODAN Predicted CDS Pa_1_16180 (Gag-pol polypro...    47   7e-04
tr|Q9ZVK3|Q9ZVK3_ARATH Putative retroelement pol polyprotein OS=...    46   0.001
tr|Q2H2Q7|Q2H2Q7_CHAGB Putative uncharacterized protein OS=Chaet...    44   0.005
tr|Q947Y5|Q947Y5_ORYSA Putative retroelement OS=Oryza sativa GN=...    41   0.031
tr|Q8RUU3|Q8RUU3_ORYSJ Retrotransposon protein, putative, unclas...    41   0.031
tr|Q33A89|Q33A89_ORYSJ Retrotransposon protein, putative, unclas...    41   0.031
tr|Q10RT2|Q10RT2_ORYSJ Retrotransposon protein, putative, unclas...    41   0.031
tr|Q9XIG5|Q9XIG5_ARATH T10P12.3 protein OS=Arabidopsis thaliana ...    41   0.040
tr|Q84ZV5|Q84ZV5_SOYBN Polyprotein OS=Glycine max PE=4 SV=1            41   0.040
tr|Q0JIM4|Q0JIM4_ORYSJ Os01g0790200 protein OS=Oryza sativa subs...    41   0.040
tr|A5C005|A5C005_VITVI Putative uncharacterized protein OS=Vitis...    40   0.068
tr|Q01L72|Q01L72_ORYSA H0321H01.8 protein OS=Oryza sativa GN=H03...    40   0.089
tr|Q0D854|Q0D854_ORYSJ Os07g0184100 protein OS=Oryza sativa subs...    39   0.12 
tr|A5AVY5|A5AVY5_VITVI Putative uncharacterized protein OS=Vitis...    39   0.12 
tr|A5ATZ0|A5ATZ0_VITVI Putative uncharacterized protein OS=Vitis...    39   0.12 
tr|B3VTC3|B3VTC3_SORBI Putative retroelement protein OS=Sorghum ...    39   0.15 
tr|A5CBC2|A5CBC2_VITVI Putative uncharacterized protein OS=Vitis...    39   0.15 
tr|A5B326|A5B326_VITVI Putative uncharacterized protein OS=Vitis...    39   0.15 
tr|A6RCP5|A6RCP5_AJECN Predicted protein OS=Ajellomyces capsulat...    39   0.15 
tr|Q7FAB6|Q7FAB6_ORYSJ OSJNBa0033H08.9 protein OS=Oryza sativa s...    39   0.20 
tr|Q0JKY7|Q0JKY7_ORYSJ Os01g0640000 protein OS=Oryza sativa subs...    39   0.20 
tr|A6RFW8|A6RFW8_AJECN Predicted protein OS=Ajellomyces capsulat...    39   0.20 
tr|A6QU58|A6QU58_AJECN Predicted protein OS=Ajellomyces capsulat...    39   0.20 
tr|Q9XE44|Q9XE44_ARATH Putative retroelement pol polyprotein OS=...    38   0.26 
tr|A8PHN8|A8PHN8_COPC7 Putative uncharacterized protein OS=Copri...    38   0.26 
tr|A8PBY9|A8PBY9_COPC7 Putative uncharacterized protein OS=Copri...    38   0.26 
tr|A8PAJ7|A8PAJ7_COPC7 Putative uncharacterized protein OS=Copri...    38   0.26 
tr|A8NGE7|A8NGE7_COPC7 Putative uncharacterized protein OS=Copri...    38   0.26 
tr|A8NAU8|A8NAU8_COPC7 Putative uncharacterized protein OS=Copri...    38   0.26 
tr|A6R9I3|A6R9I3_AJECN Putative uncharacterized protein OS=Ajell...    38   0.26 

>tr|B2ATK7|B2ATK7_PODAN Predicted CDS Pa_1_16180 (Gag-pol polyprotein)
            OS=Podospora anserina PE=4 SV=1
          Length = 2033

 Score = 46.6 bits (109), Expect = 7e-04
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
 Frame = +1

Query: 199  PPFEKPRV----RKMIGKERPCRELWRRFYDPFK---VMIG*MFKLHLPHHWWFHNAFHV 357
            P FE+ ++     + I   RP ++L ++   PFK   V+     +L LP HW  HN FHV
Sbjct: 1878 PSFEQDQLVMLNARYIKTRRPSKKLDKKMLGPFKIQKVISPTAVRLTLPKHWRIHNTFHV 1937

Query: 358  SLLRPFKGDSSSEPLDD 408
            SL+ P++    + P  D
Sbjct: 1938 SLIEPYRAGGQALPDPD 1954


>tr|Q9ZVK3|Q9ZVK3_ARATH Putative retroelement pol polyprotein
            OS=Arabidopsis thaliana GN=At2g14640 PE=2 SV=1
          Length = 945

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = +1

Query: 169  IDIKLGDWVLPPFEKPRVRKMIGKERPCRELWRRFYDPFKVMIG*---MFKLHLPHHWWF 339
            +  ++GDWVL   +  R + +    R  ++L  RFY PF+V        ++L LP     
Sbjct: 796  VSFQVGDWVLLRIQPYRQKTLF--RRSSQKLSHRFYGPFQVASKHGEVAYRLTLPEGTRI 853

Query: 340  HNAFHVSLLRPFKGDSSSE 396
            H  FHVSLL+P+ GD   +
Sbjct: 854  HPVFHVSLLKPWVGDGEPD 872


>tr|Q2H2Q7|Q2H2Q7_CHAGB Putative uncharacterized protein OS=Chaetomium
            globosum GN=CHGG_03939 PE=4 SV=1
          Length = 1892

 Score = 43.9 bits (102), Expect = 0.005
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
 Frame = +1

Query: 199  PPFEKPRV----RKMIGKERPCRELWRRFYDPFKVM---IG*MFKLHLPHHWWFHNAFHV 357
            P FEK ++     + I   RP ++L ++   PF+++        KL LP  W  H+ FHV
Sbjct: 1788 PNFEKDQLVLLNARNIKTRRPTKKLDKKMLGPFQIVQMVSPSAAKLKLPSSWRIHDTFHV 1847

Query: 358  SLLRPFKGDSSSEP 399
            SLL PF+  S   P
Sbjct: 1848 SLLEPFRTGSQGTP 1861


>tr|Q947Y5|Q947Y5_ORYSA Putative retroelement OS=Oryza sativa
            GN=OSJNBa0067N01.11 PE=4 SV=1
          Length = 1923

 Score = 41.2 bits (95), Expect = 0.031
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
 Frame = +1

Query: 172  DIKLGDWVLPPFEKPRVRKMIGKERPCRELWRRFYDPFKVM--IG*M-FKLHLPHHWWFH 342
            +  +GDWV    + P V+K +   R C +L  +FY PF+++  +G + +KL LP     H
Sbjct: 836  EFAVGDWVFLKLQ-PYVQKSVAS-RACHKLAFKFYGPFQILARVGTVAYKLQLPDDSTIH 893

Query: 343  NAFHVSLLRPFKG 381
              FHVS L+   G
Sbjct: 894  PVFHVSQLKVAHG 906


>tr|Q8RUU3|Q8RUU3_ORYSJ Retrotransposon protein, putative,
            unclassified (Putative gag-pol polyprotein) OS=Oryza
            sativa subsp. japonica GN=OSJNBa0014J14.7 PE=4 SV=1
          Length = 1338

 Score = 41.2 bits (95), Expect = 0.031
 Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
 Frame = +1

Query: 169  IDIKLGDWVL------PPFEKPRVRKMIGKERPCRELWRRFYDPFKVMI---G*MFKLHL 321
            +  ++G WV        P   P   K  GK RP      RFY P++V+       ++L L
Sbjct: 1162 VSFEVGAWVWLRVRHRVPASLPEAVK--GKLRP------RFYGPYRVVAVINEVAYRLAL 1213

Query: 322  PHHWWFHNAFHVSLLRPFKGDSSSEPLDDP 411
            P     H+ FHV LL+PF G S S PL  P
Sbjct: 1214 PPGTRLHDVFHVGLLKPFVGVSPSAPLALP 1243


>tr|Q33A89|Q33A89_ORYSJ Retrotransposon protein, putative,
            unclassified, expressed OS=Oryza sativa subsp. japonica
            GN=LOC_Os10g13960 PE=4 SV=1
          Length = 1347

 Score = 41.2 bits (95), Expect = 0.031
 Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
 Frame = +1

Query: 169  IDIKLGDWVL------PPFEKPRVRKMIGKERPCRELWRRFYDPFKVMI---G*MFKLHL 321
            +  ++G WV        P   P   K  GK RP      RFY P++V+       ++L L
Sbjct: 1171 VSFEVGAWVWLRVRHRVPASLPEAVK--GKLRP------RFYGPYRVVAVINEVAYRLAL 1222

Query: 322  PHHWWFHNAFHVSLLRPFKGDSSSEPLDDP 411
            P     H+ FHV LL+PF G S S PL  P
Sbjct: 1223 PPGTRLHDVFHVGLLKPFVGVSPSAPLALP 1252


>tr|Q10RT2|Q10RT2_ORYSJ Retrotransposon protein, putative,
            unclassified, expressed OS=Oryza sativa subsp. japonica
            GN=LOC_Os03g05340 PE=4 SV=1
          Length = 1920

 Score = 41.2 bits (95), Expect = 0.031
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
 Frame = +1

Query: 172  DIKLGDWVLPPFEKPRVRKMIGKERPCRELWRRFYDPFKVM--IG*M-FKLHLPHHWWFH 342
            +  +GDWV    + P V+K +   R C +L  +FY PF+++  +G + +KL LP     H
Sbjct: 836  EFAVGDWVFLKLQ-PYVQKSVAS-RACHKLAFKFYGPFQILARVGTVAYKLQLPDDSTIH 893

Query: 343  NAFHVSLLRPFKG 381
              FHVS L+   G
Sbjct: 894  PVFHVSQLKVAHG 906


>tr|Q9XIG5|Q9XIG5_ARATH T10P12.3 protein OS=Arabidopsis thaliana
            GN=T10P12.3 PE=4 SV=1
          Length = 1264

 Score = 40.8 bits (94), Expect = 0.040
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
 Frame = +1

Query: 181  LGDWVLPPFEKPRVRKMIGKERPCRELWRRFYDPFKVM--IG*M-FKLHLPHHWWFHNAF 351
            +GDWV    +  R R ++   RPC +L  +F+ PF+++  IG + ++++LP     HN F
Sbjct: 1058 VGDWVHLKLQPYRQRTVV--RRPCYKLAAKFFGPFEIVERIGNVAYRINLPASSKIHNVF 1115

Query: 352  HVSLLRPFKGDSSSEPLDDP 411
            +VS L+   G+       +P
Sbjct: 1116 NVSQLKKVFGEQQVVQATNP 1135


>tr|Q84ZV5|Q84ZV5_SOYBN Polyprotein OS=Glycine max PE=4 SV=1
          Length = 1552

 Score = 40.8 bits (94), Expect = 0.040
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
 Frame = +1

Query: 169  IDIKLGDWVLPPFEKPRVRKMIGKERPCRELWRRFYDPFKVM--IG*M-FKLHLPHHWWF 339
            +  ++GD VL   +  R    + ++   ++L  R++ PFKV+  IG + +KL LP     
Sbjct: 1350 VSFQIGDEVLVKLQPYRQHSAVLRKN--QKLSMRYFGPFKVLAKIGDVAYKLELPSAARI 1407

Query: 340  HNAFHVSLLRPFKGDSSSEPLDDP 411
            H  FHVS L+PF G +    L  P
Sbjct: 1408 HPVFHVSQLKPFNGTAQDPYLPLP 1431


>tr|Q0JIM4|Q0JIM4_ORYSJ Os01g0790200 protein OS=Oryza sativa subsp.
           japonica GN=Os01g0790200 PE=4 SV=1
          Length = 519

 Score = 40.8 bits (94), Expect = 0.040
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
 Frame = +1

Query: 181 LGDWVLPPFEKPRVRKMIGKERPCRELWRRFYDPFKVM--IG*M-FKLHLPHHWWFHNAF 351
           +GDWV    + P V+  +   R   +L  ++Y PF+V+  +G + +KL LP     H+ F
Sbjct: 303 IGDWVYLKLQ-PYVQSSVAP-RANHKLAFKYYGPFQVIDKLGTVAYKLQLPETSSVHHVF 360

Query: 352 HVSLLRPFKG 381
           HVSLL+P KG
Sbjct: 361 HVSLLKPAKG 370