BP918276
Clone id YMU001_000111_E12
Library
Length 500
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000111_E12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTGGAAGCTCATATGATTCACGACTTTAAGAAAGAATACACCATAGGACTATTGAGAAAA
AAGAAAAAGGTCGAGATGGTGTCAAAATTGTGCCTCCTCATATGGAACCCCACAAACTGT
TGCAACCAAAGAGGCTCTACCAATATCAGGACATAACTTGATGGTCAATAGAAACCGCAA
GCTTTCAGTCCTACGTGCACTTCTGGAAATAAATGAAGTGCCAACACACAAATTGCCTTG
CAACTCTACAAGTAGCTTCTCTTTCTGTCTTCAAGGTGCAAGAGACCTTGTGTGTTAAAT
GTAGGGTGCACAAAGCTATGCACCCCATTTTGAGGGTCGGTCAAGGGATCCCACATGCTT
ATTGGGATATGAAACCACCCTTCATTTATATAGAATCACTGCTGCATTCTTCAGCTTAAC
AATCAAGATAAGACTCATTCTTGCACCAAACCATACGCAGACCTGAGTGGCTACCTTTGG
GCTTCCAAACTTCTGATCTC
■■Homology search results ■■ -
sp_hit_id Q9M041
Definition sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsis thaliana
Align length 61
Score (bit) 31.6
E-value 2.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918276|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_E12.
(500 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsi... 32 2.1
sp|Q9T0E4|FBK81_ARATH Putative F-box/Kelch-repeat protein At4g11... 30 4.8

>sp|Q9M041|BH140_ARATH Transcription factor bHLH140 OS=Arabidopsis
thaliana GN=BHLH140 PE=4 SV=1
Length = 912

Score = 31.6 bits (70), Expect = 2.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Frame = +2

Query: 134 ALPISGHNLMVNRNRKLSVLRALLEINEV--------PTHKLPCNSTSSFSFCLQGARDL 289
ALP S N N RK + A + ++ V PT P ST+ F F L+ A D+
Sbjct: 419 ALPASSSNEATNTTRKADEMTANVRVSPVKLGSADIVPTLAFPSISTADFQFDLEKASDI 478

Query: 290 V 292
+
Sbjct: 479 I 479


>sp|Q9T0E4|FBK81_ARATH Putative F-box/Kelch-repeat protein At4g11770
OS=Arabidopsis thaliana GN=At4g11770 PE=2 SV=1
Length = 396

Score = 30.4 bits (67), Expect = 4.8
Identities = 24/87 (27%), Positives = 35/87 (40%)
Frame = +2

Query: 17 FTTLRKNTP*DY*EKRKRSRWCQNCASSYGTPQTVATKEALPISGHNLMVNRNRKLSVLR 196
FT R+ T E +SRW +C T T AT + NLMV
Sbjct: 81 FTLCRRPTRTPSPEPNLKSRWFTSCFRPILTNLTRATSKEEKKLSENLMV---------- 130

Query: 197 ALLEINEVPTHKLPCNSTSSFSFCLQG 277
++ N+ P L CN+ S+ + + G
Sbjct: 131 SIPTSNDCPLSGLTCNTIGSYIYMIGG 157


tr_hit_id Q14VN9
Definition tr|Q14VN9|Q14VN9_9VIRU ORF91 OS=Ranid herpesvirus 1
Align length 96
Score (bit) 33.5
E-value 5.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918276|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_E12.
(500 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q14VN9|Q14VN9_9VIRU ORF91 OS=Ranid herpesvirus 1 PE=4 SV=1 33 5.7
tr|Q9M9X2|Q9M9X2_ARATH F18C1.6 protein (Putative uncharacterized... 33 5.7

>tr|Q14VN9|Q14VN9_9VIRU ORF91 OS=Ranid herpesvirus 1 PE=4 SV=1
Length = 287

Score = 33.5 bits (75), Expect = 5.7
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Frame = +2

Query: 104 GTPQTVATKEALPISGHNLMVNRNRKLSVLRALLEINEV------PTHKLPCNSTSSFSF 265
GT TV+ + + H + RNR +V RAL +++E KL C S + S
Sbjct: 96 GTAITVSVESPQRWTQH-IFAGRNRNSNVARALADLHEALDLQATVLRKL-CGSIARDSL 153

Query: 266 CLQGA-------------RDLVC*M*GAQSYAPHFE 334
CL G+ + C + G SY PHFE
Sbjct: 154 CLPGSAIPRPAHPHHTWGHGVACDVNGTLSYVPHFE 189


>tr|Q9M9X2|Q9M9X2_ARATH F18C1.6 protein (Putative uncharacterized
protein At3g05670) OS=Arabidopsis thaliana GN=At3g05670
PE=2 SV=1
Length = 883

Score = 33.5 bits (75), Expect = 5.7
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Frame = -1

Query: 374 FHIPISMWDPLTDPQNGVHSFVHPTFNTQGLLHLEDRKRSYL*SCKAICVLALHLFPE-- 201
FH ++ DPL Q +HS + T ++ L++R +++L + + L F E
Sbjct: 742 FHHGLAQGDPLVSNQQRLHSHMPNTMSSMAGERLQERVKAHLKNLSSQNDLGQTTFDEIS 801

Query: 200 ---VHVGLKACGFY*PSSYVLILVEPL 129
+H L ACG SS V ++ P+
Sbjct: 802 TCSIHTILAACGLEHESSEVHLVPPPV 828