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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918283
Clone id YMU001_000111_F07
Library
Length 560
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000111_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTGTAACCGCACTCAAAGCTTGTATTTAAAAGAAGGATGGAAACTGAGTTTTAATGTG
GGTTACTTTAAAAGAACTCCAATGCCAATTTGAATCTTGTCGTTACACTTATCCCTATGC
CAGCCAGGCCAGCACCCATGGCGACTTTGGCAATGACACTCACACTCTCCTCTCAATAAG
TAGATGCATGACAATCAAGCTTGTGTTCTTTTTACATATCTTGCCATTGGGTTGCCAATA
TTTATCTCATCATCATCATGTCTTATGTAGACAGAACTTCGACAACATTCCCCGGACTTG
CTTTTGGGTTCATCTGCAACAATCAAGGCAAATATGGGGGTGTTGCTAGATTGGTGAGCA
TGGGGCAAAGGGACCTCTCCCTCCCATTACAGCTCAACCAGGCTCTAGGGGGCAAGAACT
TCTCCTATTGCCTTGTCACTCCAACTGACACATCCTCTAGCAAAGCCATGACTCTGCTCA
TGGACAAGGAAGCCACAGAGAACGCCTCGTCAATGGGCTTTATGCCCATGCATCTTGTGA
ACCTCTGTGGTAGCATCCCT
■■Homology search results ■■ -
sp_hit_id Q766C3
Definition sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis
Align length 67
Score (bit) 39.3
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918283|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_F07.
         (560 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepent...    39   2e-06
sp|Q6PCT8|DHSD_RAT Succinate dehydrogenase [ubiquinone] cytochro...    31   4.7  
sp|Q96PP4|TSG13_HUMAN Testis-specific gene 13 protein OS=Homo sa...    30   8.1  

>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes
           gracilis GN=nep1 PE=1 SV=1
          Length = 437

 Score = 39.3 bits (90), Expect(2) = 2e-06
 Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +3

Query: 279 STTFPGLAFGFICNNQG-KYGGVARLVSMGQRDLSLPLQLNQALGGKNFSYCLVTPTDTS 455
           S + P + FG   NNQG   G  A LV MG+  LSLP QL+       FSYC+ TP  +S
Sbjct: 193 SVSIPNITFGCGENNQGFGQGNGAGLVGMGRGPLSLPSQLDVT----KFSYCM-TPIGSS 247

Query: 456 SSKAMTL 476
           +   + L
Sbjct: 248 TPSNLLL 254



 Score = 31.6 bits (70), Expect(2) = 2e-06
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 83  CQFESCRYTYPYASQASTHGDFGNDTHTLLSIS 181
           C    C+YTY Y   + T G  G +T T  S+S
Sbjct: 163 CSNNFCQYTYGYGDGSETQGSMGTETLTFGSVS 195


>sp|Q6PCT8|DHSD_RAT Succinate dehydrogenase [ubiquinone] cytochrome
           b small subunit, mitochondrial OS=Rattus norvegicus
           GN=Sdhd PE=2 SV=1
          Length = 159

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 21/87 (24%), Positives = 37/87 (42%)
 Frame = +3

Query: 297 LAFGFICNNQGKYGGVARLVSMGQRDLSLPLQLNQALGGKNFSYCLVTPTDTSSSKAMTL 476
           L  G +C+ QG      R  ++    +S  LQ     G +   +  ++P+  S SKA +L
Sbjct: 5   LKLGVLCSGQGARALSLRSRAVRPAFVSAFLQDQPTPGWRGTQHIHLSPSHQSGSKAASL 64

Query: 477 LMDKEATENASSMGFMPMHLVNLCGSI 557
               E   +   +G +P   +N C  +
Sbjct: 65  HWTSERVVSVLLLGLIPAGYLNPCSVV 91


>sp|Q96PP4|TSG13_HUMAN Testis-specific gene 13 protein OS=Homo
           sapiens GN=TSGA13 PE=1 SV=1
          Length = 275

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = -1

Query: 386 WEGEVPLPHAHQSSNTPIFALIVADEPKSKSGECCRSSVYIRHDDDEINIGNPMARYVKR 207
           W   +P     +S   PIF LI++D+P SK  +  R S     D+D  + G     Y  R
Sbjct: 142 WLPRMPQKKKLRSKLKPIFPLILSDDPTSKREQWFRFST----DNDFKSEGKYSKVYALR 197

Query: 206 TQ 201
           TQ
Sbjct: 198 TQ 199
tr_hit_id A9NXW9
Definition tr|A9NXW9|A9NXW9_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 88
Score (bit) 55.8
E-value 1.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918283|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_F07.
         (560 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NXW9|A9NXW9_PICSI Putative uncharacterized protein OS=Picea...    56   1e-09
tr|A9ZMF9|A9ZMF9_NEPAL Aspartic proteinase nepenthesin I OS=Nepe...    42   7e-07
tr|A9RF88|A9RF88_PHYPA Predicted protein (Fragment) OS=Physcomit...    45   2e-06
tr|A9T306|A9T306_PHYPA Predicted protein (Fragment) OS=Physcomit...    44   5e-06
tr|A9RSN4|A9RSN4_PHYPA Predicted protein OS=Physcomitrella paten...    40   1e-05
tr|Q94D20|Q94D20_ORYSJ Nucleoid DNA-binding protein cnd41-like (...    46   2e-05
tr|A2WS70|A2WS70_ORYSI Putative uncharacterized protein OS=Oryza...    46   2e-05
tr|A9NV32|A9NV32_PICSI Putative uncharacterized protein OS=Picea...    44   7e-05
tr|A9T6L4|A9T6L4_PHYPA Predicted protein OS=Physcomitrella paten...    44   9e-05
tr|A2ZV28|A2ZV28_ORYSJ Putative uncharacterized protein OS=Oryza...    42   2e-04
tr|A9TTJ5|A9TTJ5_PHYPA Predicted protein (Fragment) OS=Physcomit...    49   2e-04
tr|A9RYP4|A9RYP4_PHYPA Predicted protein OS=Physcomitrella paten...    43   3e-04
tr|A2Y830|A2Y830_ORYSI Putative uncharacterized protein OS=Oryza...    42   3e-04
tr|Q6YTJ6|Q6YTJ6_ORYSJ Os08g0267300 protein OS=Oryza sativa subs...    48   4e-04
tr|A2YT82|A2YT82_ORYSI Putative uncharacterized protein OS=Oryza...    48   4e-04
tr|A7P351|A7P351_VITVI Chromosome chr1 scaffold_5, whole genome ...    38   4e-04
tr|Q6I5E1|Q6I5E1_ORYSJ Os05g0590000 protein OS=Oryza sativa subs...    42   4e-04
tr|Q6L558|Q6L558_ORYSJ Unknow protein OS=Oryza sativa subsp. jap...    42   4e-04
tr|A3AUA3|A3AUA3_ORYSJ Putative uncharacterized protein OS=Oryza...    39   5e-04
tr|Q0JCV1|Q0JCV1_ORYSJ Os04g0448300 protein OS=Oryza sativa subs...    39   5e-04
tr|Q7XV20|Q7XV20_ORYSJ OSJNBa0064H22.10 protein OS=Oryza sativa ...    39   5e-04
tr|Q01J77|Q01J77_ORYSA OSIGBa0152K17.10 protein (H0818E04.1 prot...    39   5e-04
tr|A2XU00|A2XU00_ORYSI Putative uncharacterized protein OS=Oryza...    39   5e-04
tr|B8LKD5|B8LKD5_PICSI Putative uncharacterized protein OS=Picea...    39   0.001
tr|B4FAK3|B4FAK3_MAIZE Putative uncharacterized protein OS=Zea m...    46   0.001
tr|Q9C864|Q9C864_ARATH Chloroplast nucleoid DNA binding protein,...    39   0.002
tr|A9RMH8|A9RMH8_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.002
tr|A9T346|A9T346_PHYPA Predicted protein (Fragment) OS=Physcomit...    45   0.003
tr|Q9C6M0|Q9C6M0_ARATH Putative uncharacterized protein F2J7.6 (...    37   0.003
tr|A7QVZ3|A7QVZ3_VITVI Chromosome chr2 scaffold_196, whole genom...    45   0.003

>tr|A9NXW9|A9NXW9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 460

 Score = 55.8 bits (133), Expect(2) = 1e-09
 Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
 Frame = +3

Query: 276 TSTTFPGLAFGFICNNQGKYGGVAR---LVSMGQRDLSLPLQLNQALGGKNFSYCLVTPT 446
           TS + P +AFG  C  + + GG ++   LV  G+  LSL  QL Q+LG K FSYCLV+ T
Sbjct: 212 TSQSLPHIAFG--CGQENEGGGFSQGGGLVGFGRGPLSLISQLGQSLGNK-FSYCLVSIT 268

Query: 447 DTSSSKAMTLLMDKEATENASSMGFMPM 530
           D S SK   L + K A+ NA ++   P+
Sbjct: 269 D-SPSKTSPLFIGKTASLNAKTVSSTPL 295



 Score = 30.0 bits (66), Expect(2) = 1e-09
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 56  MWVTLKELQCQFESCRYTYPYASQASTHGDFGNDTHTLLSIS 181
           M   L    C   +C Y Y Y  Q+ST G    ++ TL S S
Sbjct: 174 MCQALPMYSCSGANCEYLYSYGDQSSTQGILSYESFTLTSQS 215


>tr|A9ZMF9|A9ZMF9_NEPAL Aspartic proteinase nepenthesin I
           OS=Nepenthes alata GN=NEP1 PE=2 SV=1
          Length = 437

 Score = 42.0 bits (97), Expect(2) = 7e-07
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +3

Query: 279 STTFPGLAFGFICNNQG-KYGGVARLVSMGQRDLSLPLQLNQALGGKNFSYCLVTPTDTS 455
           S + P + FG   NNQG   G  A LV MG+  LSLP QL+       FSYC+ TP  +S
Sbjct: 193 SVSIPNITFGCGENNQGFGQGNGAGLVGMGRGPLSLPSQLDVT----KFSYCM-TPIGSS 247

Query: 456 SSKAMTL 476
           +S  + L
Sbjct: 248 NSSTLLL 254



 Score = 34.3 bits (77), Expect(2) = 7e-07
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 68  LKELQCQFESCRYTYPYASQASTHGDFGNDTHTLLSIS 181
           L+   C   SC+YTY Y   + T G  G +T T  S+S
Sbjct: 158 LQSPTCSNNSCQYTYGYGDGSETQGSMGTETLTFGSVS 195


>tr|A9RF88|A9RF88_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_113106 PE=4 SV=1
          Length = 384

 Score = 45.1 bits (105), Expect(2) = 2e-06
 Identities = 26/57 (45%), Positives = 31/57 (54%)
 Frame = +3

Query: 291 PGLAFGFICNNQGKYGGVARLVSMGQRDLSLPLQLNQALGGKNFSYCLVTPTDTSSS 461
           P  AFG    N G + G A LV +GQ  LSL  QL+     K FSYCLV+    S+S
Sbjct: 147 PNFAFGCGTQNLGTFAGAAGLVGLGQGPLSLNSQLSHTFANK-FSYCLVSLNSLSAS 202



 Score = 29.3 bits (64), Expect(2) = 2e-06
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 83  CQFESCRYTYPYASQASTHGDFGNDTHTL 169
           C    C+Y Y Y  Q++T+GD   +T +L
Sbjct: 109 CAANVCQYQYTYGDQSNTNGDLAFETISL 137


>tr|A9T306|A9T306_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_14028 PE=4 SV=1
          Length = 351

 Score = 44.3 bits (103), Expect(2) = 5e-06
 Identities = 31/88 (35%), Positives = 42/88 (47%)
 Frame = +3

Query: 267 VDRTSTTFPGLAFGFICNNQGKYGGVARLVSMGQRDLSLPLQLNQALGGKNFSYCLVTPT 446
           V    +T   + FG   N +G + G   L+ +GQ  LSLP QLN +     FSYCLV  +
Sbjct: 103 VTLNGSTLARIGFGCGHNQEGTFAGADGLIGLGQGPLSLPSQLNSSF-THIFSYCLVDQS 161

Query: 447 DTSSSKAMTLLMDKEATENASSMGFMPM 530
            T +   +T      A EN S   F P+
Sbjct: 162 TTGTFSPITF---GNAAEN-SRASFTPL 185



 Score = 28.9 bits (63), Expect(2) = 5e-06
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 95  SCRYTYPYASQASTHGDFGNDTHTL 169
           +C Y+Y Y   ++T GDF  +T TL
Sbjct: 81  TCTYSYSYGDGSNTRGDFAFETVTL 105


>tr|A9RSN4|A9RSN4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_118772 PE=4 SV=1
          Length = 406

 Score = 40.0 bits (92), Expect(2) = 1e-05
 Identities = 23/65 (35%), Positives = 39/65 (60%)
 Frame = +3

Query: 318 NNQGKYGGVARLVSMGQRDLSLPLQLNQALGGKNFSYCLVTPTDTSSSKAMTLLMDKEAT 497
           +N+G + G A L+ +G+  LS P Q++   GG+ FSYCL T  +T S++  +L+  + A 
Sbjct: 175 DNEGYFVGAAGLLGLGKGPLSFPNQVDPQNGGR-FSYCL-TDRETDSTEGSSLVFGEAAV 232

Query: 498 ENASS 512
             A +
Sbjct: 233 PPAGA 237



 Score = 32.0 bits (71), Expect(2) = 1e-05
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 83  CQFESCRYTYPYASQASTHGDFGNDTHTLLSISRCMTIKLVFFLHILPLGC 235
           CQ   C Y   Y   + T G+FG D  +L S S    +     L+ +PLGC
Sbjct: 126 CQANKCLYQVDYGDGSFTTGEFGTDDVSLNSTSGVGQV----VLNKIPLGC 172


>tr|Q94D20|Q94D20_ORYSJ Nucleoid DNA-binding protein cnd41-like
           (Os01g0598600 protein) OS=Oryza sativa subsp. japonica
           GN=P0025A05.25 PE=4 SV=1
          Length = 500

 Score = 45.8 bits (107), Expect(2) = 2e-05
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
 Frame = +3

Query: 291 PGLAFGFICNNQGKYGGVARLVSMGQRDLSLPLQLNQALGGKNFSYCLVTPTDTS---SS 461
           P +A G   +N+G +   A L+ +G+  LS P Q+++  G ++FSYCLV  T +S   +S
Sbjct: 252 PRVALGCGHDNEGLFVAAAGLLGLGRGSLSFPSQISRRFG-RSFSYCLVDRTSSSASATS 310

Query: 462 KAMTLLMDKEATENASSMGFMPM 530
           ++ T+     A   +++  F PM
Sbjct: 311 RSSTVTFGSGAVGPSAAASFTPM 333



 Score = 25.4 bits (54), Expect(2) = 2e-05
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 92  ESCRYTYPYASQASTHGDFGNDTHTLLSISRCMTIKL 202
           ++C Y   Y   + T GDF  +T T  S +R   + L
Sbjct: 220 KACLYQVAYGDGSVTAGDFATETLTFASGARVPRVAL 256


>tr|A2WS70|A2WS70_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_02707 PE=4 SV=1
          Length = 500

 Score = 45.8 bits (107), Expect(2) = 2e-05
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
 Frame = +3

Query: 291 PGLAFGFICNNQGKYGGVARLVSMGQRDLSLPLQLNQALGGKNFSYCLVTPTDTS---SS 461
           P +A G   +N+G +   A L+ +G+  LS P Q+++  G ++FSYCLV  T +S   +S
Sbjct: 252 PRVALGCGHDNEGLFVAAAGLLGLGRGSLSFPSQISRRFG-RSFSYCLVDRTSSSASATS 310

Query: 462 KAMTLLMDKEATENASSMGFMPM 530
           ++ T+     A   +++  F PM
Sbjct: 311 RSSTVTFGSGAVGPSAAASFTPM 333



 Score = 25.4 bits (54), Expect(2) = 2e-05
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 92  ESCRYTYPYASQASTHGDFGNDTHTLLSISRCMTIKL 202
           ++C Y   Y   + T GDF  +T T  S +R   + L
Sbjct: 220 KACLYQVAYGDGSVTAGDFATETLTFASGARVPRVAL 256


>tr|A9NV32|A9NV32_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 479

 Score = 43.5 bits (101), Expect(2) = 7e-05
 Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +3

Query: 279 STTFPGLAFGFICNNQGKYGGVARLVSMGQRDLSLPLQLNQALGGKNFSYCL---VTPTD 449
           S +FP  AFG    N G + G A L+ +G+  LS P Q     GG+ FSYCL   V+ T 
Sbjct: 237 SDSFPSFAFGCGHTNTGLFKGSAGLLGLGRTALSFPSQTKSKYGGQ-FSYCLPDFVSSTS 295

Query: 450 TSS 458
           T S
Sbjct: 296 TGS 298



 Score = 25.8 bits (55), Expect(2) = 7e-05
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 83  CQFESCRYTYPYASQASTHGDFGNDTHTLLSIS 181
           C+   C Y   Y   + + GDF  +T TL S S
Sbjct: 207 CRLGGCVYEINYGDGSRSQGDFSQETLTLGSDS 239


>tr|A9T6L4|A9T6L4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_141111 PE=4 SV=1
          Length = 419

 Score = 43.5 bits (101), Expect(2) = 9e-05
 Identities = 25/59 (42%), Positives = 33/59 (55%)
 Frame = +3

Query: 285 TFPGLAFGFICNNQGKYGGVARLVSMGQRDLSLPLQLNQALGGKNFSYCLVTPTDTSSS 461
           T P +AFG    N G + G A +V +GQ  LSL  Q + ++  K FSYCLV    T +S
Sbjct: 179 TIPNVAFGCGHTNLGSFAGAAGIVGLGQGPLSLISQAS-SITSKKFSYCLVPLGSTKTS 236



 Score = 25.4 bits (54), Expect(2) = 9e-05
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 95  SCRYTYPYASQASTHGDFGNDTHTL 169
           SC+Y Y Y   +ST G    +T T+
Sbjct: 151 SCKYDYMYGDGSSTSGALSTETVTV 175


>tr|A2ZV28|A2ZV28_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_002400 PE=4 SV=1
          Length = 501

 Score = 42.4 bits (98), Expect(2) = 2e-04
 Identities = 22/57 (38%), Positives = 36/57 (63%)
 Frame = +3

Query: 291 PGLAFGFICNNQGKYGGVARLVSMGQRDLSLPLQLNQALGGKNFSYCLVTPTDTSSS 461
           P +A G   +N+G +   A L+ +G+  LS P Q+++  G ++FSYCLV  T +S+S
Sbjct: 252 PRVALGCGHDNEGLFVAAAGLLGLGRGSLSFPSQISRRFG-RSFSYCLVDRTSSSAS 307



 Score = 25.4 bits (54), Expect(2) = 2e-04
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 92  ESCRYTYPYASQASTHGDFGNDTHTLLSISRCMTIKL 202
           ++C Y   Y   + T GDF  +T T  S +R   + L
Sbjct: 220 KACLYQVAYGDGSVTAGDFATETLTFASGARVPRVAL 256