BP918284 |
Clone id |
YMU001_000111_F08 |
Library |
YMU01 |
Length |
507 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000111_F08. |
Accession |
BP918284 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL951Contig1 |
Sequence |
TACCGACTTATCAGCTTGTTGGTTGCTGCAATTTGTTCCTGGGTCCTAGTCTTGTCATGG CTTGGTCCAAATAAGTGTGCTAGCTATTCCACTGCTCTAGGTTCTCAGTTATGCATTATG TCACCGTGGACTTTTGGATCAAATGTTAATGTACTGTGCAGGTGCAAGCGAACGGCTAGC TGTTTTTCTCTTCAAGGCTGGTTGGTGGTTATCAGCTTTTACGGTTTTGTTTTTTCCTCT CTAGTCTGCCCGTGCTCTATTCGATTGTCTCTTCTTTGGTTGAATACCTGTCTCTTAGCA GTTTGGGGTGGTCTTTGGGTCTTTTGGTACTACGACACTTGAACTTGTCTTGATGGATAG CAGAGTGTCAAGTTTGTTTGACATTGGTGGGAGTGAAGCGTTGAGGGGAATGGATCTTGG ACTTATGCCTTGGCCAGCTTCAGACTTTTGGTATGCCAAGTGATAAATGGAATGTATNGC CTCAAAACCTGGTAGGCAGCAGTGCAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P58312 |
Definition |
sp|P58312|AT1A3_OREMO Sodium/potassium-transporting ATPase subunit alpha-3 OS=Oreochromis mossambicus |
Align length |
58 |
Score (bit) |
31.6 |
E-value |
2.2 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q6JUU0 |
Definition |
tr|Q6JUU0|Q6JUU0_DANRE Spastin OS=Danio rerio |
Align length |
70 |
Score (bit) |
35.4 |
E-value |
1.6 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918284|Adiantum capillus-veneris mRNA, clone: YMU001_000111_F08. (507 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q6JUU0|Q6JUU0_DANRE Spastin OS=Danio rerio GN=spast PE=2 SV=1 35 1.6 tr|Q4RN35|Q4RN35_TETNG Chromosome undetermined SCAF15016, whole ... 35 2.1 tr|Q6NW58|Q6NW58_DANRE Spastin OS=Danio rerio GN=spast PE=2 SV=1 35 2.7 tr|A8J7Q1|A8J7Q1_CHLRE RWP-RK transcription factor OS=Chlamydomo... 34 4.7 tr|Q3S347|Q3S347_PACMR Sodium-potassium-activated adenosine trip... 33 6.0 tr|Q3S346|Q3S346_PACMR Sodium-potassium-activated adenosine trip... 33 6.0 tr|A1CZJ4|A1CZJ4_NEOFI Putative uncharacterized protein OS=Neosa... 33 7.8 tr|B4F6U5|B4F6U5_XENTR Putative uncharacterized protein OS=Xenop... 33 8.0 tr|Q8BPB4|Q8BPB4_MOUSE Putative uncharacterized protein OS=Mus m... 33 8.0 tr|Q4DVD0|Q4DVD0_TRYCR Putative uncharacterized protein OS=Trypa... 33 8.0
>tr|Q6JUU0|Q6JUU0_DANRE Spastin OS=Danio rerio GN=spast PE=2 SV=1 Length = 570
Score = 35.4 bits (80), Expect = 1.6 Identities = 25/70 (35%), Positives = 32/70 (45%) Frame = -1
Query: 384 MSNKLDTLLSIKTSSSVVVPKDPKTTPNC*ETGIQPKKRQSNRARAD*RGKNKTVKADNH 205 +S K DTL +I +S+ PK+TPN P QS+R K TVK N+ Sbjct: 192 VSKKKDTL-TITNQTSLRPKNPPKSTPNASGLNCTPSAAQSSRTGPQNNQKGPTVKGKNN 250
Query: 204 QPALKRKTAS 175 A TAS Sbjct: 251 VKASTTATAS 260
>tr|Q4RN35|Q4RN35_TETNG Chromosome undetermined SCAF15016, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00031760001 PE=4 SV=1 Length = 435
Score = 35.0 bits (79), Expect = 2.1 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +2
Query: 101 VLSYALCHRGLLDQMLMYCAGASERLAVFLFKAGWWLSAFTVLF 232 VL ++LC L L YC G L ++ K WW AF F Sbjct: 365 VLIFSLCVETALAAFLSYCPGMDVALRMYPLKPSWWFCAFPYSF 408
>tr|Q6NW58|Q6NW58_DANRE Spastin OS=Danio rerio GN=spast PE=2 SV=1 Length = 570
Score = 34.7 bits (78), Expect = 2.7 Identities = 25/70 (35%), Positives = 32/70 (45%) Frame = -1
Query: 384 MSNKLDTLLSIKTSSSVVVPKDPKTTPNC*ETGIQPKKRQSNRARAD*RGKNKTVKADNH 205 +S K DTL +I +S+ PK+TPN P QS+R K TVK N+ Sbjct: 192 VSKKKDTL-TITNQTSLRPKNPPKSTPNASGLNRTPSAAQSSRTGPQNNQKGPTVKGKNN 250
Query: 204 QPALKRKTAS 175 A TAS Sbjct: 251 VKASTTATAS 260
>tr|A8J7Q1|A8J7Q1_CHLRE RWP-RK transcription factor OS=Chlamydomonas reinhardtii GN=RWP1 PE=4 SV=1 Length = 657
Score = 33.9 bits (76), Expect = 4.7 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Frame = -1
Query: 456 AYQKSEAGQGISPRSIPLNASLPPMSNKLDTLLSIKTSSSVVVPKDPKTTPNC*ETGIQP 277 A QKSE G G+ R L A P +L+ L K++ S K K +P Sbjct: 378 AQQKSETGDGVQSRDPELGAQPEP---ELERELLPKSAGSPDAAKPAKA---------KP 425
Query: 276 KKRQSNRARAD*R-GKNKTVKADNHQPALKRKTASR 172 K+ Q+ +A+A R GK ++ K D+ T+SR Sbjct: 426 KRAQAAKAQAKARKGKRQSTKEDSDAGDSSSSTSSR 461
>tr|Q3S347|Q3S347_PACMR Sodium-potassium-activated adenosine triphosphatase alpha subunit D isoform OS=Pachygrapsus marmoratus PE=2 SV=1 Length = 1037
Score = 33.5 bits (75), Expect = 6.0 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = +2
Query: 101 VLSYALCHRGLLDQMLMYCAGASERLAVFLFKAGWWLSA--FTVLFF 235 VL++ LC +L L Y G + L ++ K WWL A F++L F Sbjct: 967 VLNFGLCFETILAAFLSYTPGMDKGLRMYPLKFYWWLPALPFSLLIF 1013
>tr|Q3S346|Q3S346_PACMR Sodium-potassium-activated adenosine triphosphatase alpha subunit C isoform OS=Pachygrapsus marmoratus PE=2 SV=1 Length = 1010
Score = 33.5 bits (75), Expect = 6.0 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = +2
Query: 101 VLSYALCHRGLLDQMLMYCAGASERLAVFLFKAGWWLSA--FTVLFF 235 VL++ LC +L L Y G + L ++ K WWL A F++L F Sbjct: 940 VLNFGLCFETILAAFLSYTPGMDKGLRMYPLKFYWWLPALPFSLLIF 986
>tr|A1CZJ4|A1CZJ4_NEOFI Putative uncharacterized protein OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) GN=NFIA_037380 PE=4 SV=1 Length = 424
Score = 33.1 bits (74), Expect = 7.8 Identities = 14/55 (25%), Positives = 29/55 (52%) Frame = -2
Query: 389 HQCQTNLTLCYPSRQVQVS*YQKTQRPPQTAKRQVFNQRRDNRIEHGQTREEKTK 225 H+C+ L CY S ++ S Y + ++ Q N+R+ + ++ +T +E T+ Sbjct: 96 HRCRNILATCYDSEEMLYSKYPQAKQHVQDLLSSFSNKRKQSDLDGSETEKESTQ 150
>tr|B4F6U5|B4F6U5_XENTR Putative uncharacterized protein OS=Xenopus tropicalis PE=2 SV=1 Length = 1576
Score = 33.1 bits (74), Expect = 8.0 Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 6/101 (5%) Frame = -1
Query: 450 QKSEAGQGISPRSIPLNASL---PPMSNKLDTLLSIKTSSSVVVPKDPKTTPNC*ETGIQ 280 +KS A + ++P+ N+ L P + ++DT +++ ++S + K NC + I+ Sbjct: 711 RKSNAKKTLAPKPAAGNSVLHLQPSATERIDTTDNLQGANSSITLKKVSDKKNCKDEKIR 770
Query: 279 PKKRQSNRARAD*RGKNKTVKA--DNHQPALKRK-TASRSL 166 PK + + + + KNK + + QP ++K T S SL Sbjct: 771 PKLTYNRKRFGETKPKNKVLATYMTHDQPVTQQKDTLSLSL 811
>tr|Q8BPB4|Q8BPB4_MOUSE Putative uncharacterized protein OS=Mus musculus GN=OTTMUSG00000021246 PE=2 SV=1 Length = 133
Score = 33.1 bits (74), Expect = 8.0 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 5/46 (10%) Frame = +1
Query: 76 CASYSTALGSQLCIMSPWTFGSNVNVL-----CRCKRTASCFSLQG 198 CA Y LC M PWT G+ V L C RTA C+S+ G Sbjct: 30 CAVYRGLCTVGLCRMVPWTHGATVFGLEDVSRKPCSRTAYCYSVDG 75
>tr|Q4DVD0|Q4DVD0_TRYCR Putative uncharacterized protein OS=Trypanosoma cruzi GN=Tc00.1047053511217.110 PE=4 SV=1 Length = 1024
Score = 33.1 bits (74), Expect = 8.0 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Frame = -1
Query: 336 VVVPKDPKTTPNC*ETGIQPKKRQSNRARAD*-RGKNKTVKADNHQPALKRKTAS 175 +V+P+ + P T + KK+++N+A AD G KT KADN P+L AS Sbjct: 804 LVLPQKDRNVPEN-TTSTKKKKKKNNKATADVPEGTEKTNKADNAPPSLSPVVAS 857
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