BP918295
Clone id YMU001_000111_G08
Library
Length 434
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000111_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GGGTAGAGTGAAGCTGCAGGCGCCATTATAGCACAGAGTTCTGACATGCACGCTGATTTG
CAATGTCCGCCGGCAGCATGAGAATGGAAAGCTCTGCTATTGAAAGCCCAAGCACCACCA
CAATCTTGGGAAAGTAAGCCTGGTTTGAGTCATCTGGGTGCTGATAGTTGACCAGAAGGT
ATGTATTGAAAAACAGCGAGAGAACACATACGACAATTACGATCACAAGCAATACCACAT
TGTAATCCCCCATGGATGTGGTACCGTGATCTTTCAAGGCAGGTTTTCACCTCTGCTGTT
GACAACTACAGTCCGCGTCTTTCATGAACGAAAGCAAAGCGAGTACTGAGTCTTTGCAGA
TATCCTAGACCCCTCCGAGAGACTGTTGAACGAAATCTTTTACCTTGCGAGCGACAGCGT
TAGCTGTTTCCTAG
■■Homology search results ■■ -
sp_hit_id Q54KD1
Definition sp|Q54KD1|LMBD1_DICDI Probable lysosomal cobalamin transporter OS=Dictyostelium discoideum
Align length 49
Score (bit) 29.6
E-value 5.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918295|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_G08.
(434 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q54KD1|LMBD1_DICDI Probable lysosomal cobalamin transporter O... 30 5.6
sp|Q9UTH1|TRM13_SCHPO tRNA guanosine-2'-O-methyltransferase trm1... 29 9.6
sp|Q20459|NAS25_CAEEL Zinc metalloproteinase nas-25 OS=Caenorhab... 29 9.6
sp|Q5RF11|HOT_PONAB Hydroxyacid-oxoacid transhydrogenase, mitoch... 29 9.6

>sp|Q54KD1|LMBD1_DICDI Probable lysosomal cobalamin transporter
OS=Dictyostelium discoideum GN=lmbrd1 PE=3 SV=1
Length = 510

Score = 29.6 bits (65), Expect = 5.6
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2

Query: 181 YLLVNYQHPDDSNQAYFPKIVVVLGLSIAELSILMLPADIANQRACQNS 35
Y +V Y + D I+ V+GL++ L ++++P DI N +S
Sbjct: 23 YFIVKY-YSDKHESGKITTIISVIGLTLTLLCVMLIPVDILNVSTMSHS 70


>sp|Q9UTH1|TRM13_SCHPO tRNA guanosine-2'-O-methyltransferase trm13
OS=Schizosaccharomyces pombe GN=trm13 PE=2 SV=1
Length = 407

Score = 28.9 bits (63), Expect = 9.6
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -1

Query: 245 LQCGIACDRNCRMCSLAVF--QYIPSGQLSAPR*LKPGLLSQDCGGAWAFNSRAFHSHAA 72
L + C +CR +L+ F + + +S P+ + +L Q G WA NS H HA+
Sbjct: 287 LVIALCCHHHCRWRTLSTFAREQLSHWGISNPQEFQ--ILRQMTG--WAVNSLREHMHAS 342

Query: 71 GG 66
GG
Sbjct: 343 GG 344


>sp|Q20459|NAS25_CAEEL Zinc metalloproteinase nas-25
OS=Caenorhabditis elegans GN=nas-25 PE=2 SV=3
Length = 399

Score = 28.9 bits (63), Expect = 9.6
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +2

Query: 248 PHGCG-TVIFQGRFSPLLLTTTVRVFHERKQSEY*VFAD--ILDPSERLLNEIFYLASDS 418
P GCG T++ R+ L+ V R +Y F + I+ PS+R L I+ + SDS
Sbjct: 278 PEGCGSTLVATDRWQKQKLS----VRFSRNDDQYFTFCNSWIVGPSDRTLQVIYEITSDS 333

Query: 419 V 421
+
Sbjct: 334 I 334


>sp|Q5RF11|HOT_PONAB Hydroxyacid-oxoacid transhydrogenase,
mitochondrial OS=Pongo abelii GN=ADHFE1 PE=2 SV=1
Length = 467

Score = 28.9 bits (63), Expect = 9.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2

Query: 206 TYDNYDHKQYHIVIPHGCGTVIFQGRFSPLLLTTTVRVFHER 331
TY D+ H ++PHG V+ SP + T T ++F ER
Sbjct: 342 TYKAKDYNVDHPLVPHGLSVVL----TSPAVFTFTAQMFPER 379


tr_hit_id A7PP47
Definition tr|A7PP47|A7PP47_VITVI Chromosome chr8 scaffold_23, whole genome shotgun sequence OS=Vitis vinifera
Align length 74
Score (bit) 96.3
E-value 2.0e-20
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918295|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_G08.
(434 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7PP47|A7PP47_VITVI Chromosome chr8 scaffold_23, whole genome... 96 2e-20
tr|A9T3A3|A9T3A3_PHYPA Predicted protein OS=Physcomitrella paten... 100 6e-20
tr|B4F9B7|B4F9B7_MAIZE Putative uncharacterized protein OS=Zea m... 92 5e-19
tr|Q658I5|Q658I5_ORYSJ Os06g0128200 protein OS=Oryza sativa subs... 91 3e-18
tr|B8B1Y6|B8B1Y6_ORYSI Putative uncharacterized protein OS=Oryza... 91 3e-18
tr|Q658I4|Q658I4_ORYSJ LMBR1 integral membrane family protein-li... 91 3e-18
tr|A3B7Z5|A3B7Z5_ORYSJ Putative uncharacterized protein OS=Oryza... 91 3e-18
tr|Q9M028|Q9M028_ARATH Putative uncharacterized protein T10O8_17... 90 7e-18
tr|Q94C82|Q94C82_ARATH Putative uncharacterized protein At3g0893... 89 1e-17
tr|Q9SR93|Q9SR93_ARATH T16O11.13 protein OS=Arabidopsis thaliana... 89 1e-17
tr|Q00XD3|Q00XD3_OSTTA LMBR1 integral membrane family protein-li... 79 9e-14
tr|A4S681|A4S681_OSTLU Predicted protein OS=Ostreococcus lucimar... 76 7e-13
tr|A8HPZ9|A8HPZ9_CHLRE Predicted protein OS=Chlamydomonas reinha... 67 6e-10
tr|Q54BI3|Q54BI3_DICDI Putative uncharacterized protein OS=Dicty... 67 6e-10
tr|Q54QP7|Q54QP7_DICDI Putative uncharacterized protein OS=Dicty... 65 1e-09
tr|B7GCP5|B7GCP5_PHATR Predicted protein (Fragment) OS=Phaeodact... 63 6e-09
tr|B8BZW6|B8BZW6_THAPS Predicted protein OS=Thalassiosira pseudo... 59 1e-07
tr|A0C9K3|A0C9K3_PARTE Chromosome undetermined scaffold_16, whol... 48 3e-04
tr|A0DVS5|A0DVS5_PARTE Chromosome undetermined scaffold_66, whol... 46 8e-04
tr|A2G7G8|A2G7G8_TRIVA LMBR1-like conserved region family protei... 45 0.002
tr|Q4Q9X7|Q4Q9X7_LEIMA Putative uncharacterized protein OS=Leish... 41 0.034
tr|Q4DTX8|Q4DTX8_TRYCR Putative uncharacterized protein OS=Trypa... 40 0.058
tr|B0EHJ6|B0EHJ6_ENTDI Putative uncharacterized protein OS=Entam... 40 0.058
tr|B0EGV3|B0EGV3_ENTDI Putative uncharacterized protein OS=Entam... 40 0.058
tr|Q4CQJ4|Q4CQJ4_TRYCR Putative uncharacterized protein OS=Trypa... 40 0.076
tr|Q22CC8|Q22CC8_TETTH LMBR1-like conserved region family protei... 39 0.099
tr|A4I1F8|A4I1F8_LEIIN Putative uncharacterized protein OS=Leish... 39 0.099
tr|A4HE60|A4HE60_LEIBR Putative uncharacterized protein OS=Leish... 39 0.13
tr|A0E1B4|A0E1B4_PARTE Chromosome undetermined scaffold_73, whol... 38 0.22
tr|A0DTG9|A0DTG9_PARTE Chromosome undetermined scaffold_63, whol... 38 0.22

>tr|A7PP47|A7PP47_VITVI Chromosome chr8 scaffold_23, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00021508001
PE=4 SV=1
Length = 509

Score = 96.3 bits (238), Expect(2) = 2e-20
Identities = 46/74 (62%), Positives = 56/74 (75%)
Frame = -2

Query: 253 MGDYNXXXXXXXXXXXXLSLFFNTYLLVNYQHPDDSNQAYFPKIVVVLGLSIAELSILML 74
MGD+N L FN YLLVNYQHPDD+NQAYFPK VVVLGLSIA +SILML
Sbjct: 1 MGDFNLALVIVAIVVCVLVFLFNIYLLVNYQHPDDANQAYFPKFVVVLGLSIAAISILML 60

Query: 73 PADIANQRACQNSV 32
PAD+AN++AC++++
Sbjct: 61 PADVANRQACRHAI 74



Score = 26.2 bits (56), Expect(2) = 2e-20
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3

Query: 42 RTLCYNGACSFTLP 1
R YNGAC+FTLP
Sbjct: 71 RHAIYNGACNFTLP 84


>tr|A9T3A3|A9T3A3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_139521 PE=4 SV=1
Length = 514

Score = 99.8 bits (247), Expect = 6e-20
Identities = 47/74 (63%), Positives = 57/74 (77%)
Frame = -2

Query: 253 MGDYNXXXXXXXXXXXXLSLFFNTYLLVNYQHPDDSNQAYFPKIVVVLGLSIAELSILML 74
MGDYN + L FN YLL+NYQHPDD NQA+FPK+VV++GLS+AELSILML
Sbjct: 1 MGDYNVVLLLIVIVVTLMVLAFNLYLLINYQHPDDKNQAWFPKVVVIVGLSVAELSILML 60

Query: 73 PADIANQRACQNSV 32
PADIAN+ AC++SV
Sbjct: 61 PADIANRHACKHSV 74


>tr|B4F9B7|B4F9B7_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 510

Score = 92.0 bits (227), Expect(2) = 5e-19
Identities = 45/74 (60%), Positives = 55/74 (74%)
Frame = -2

Query: 253 MGDYNXXXXXXXXXXXXLSLFFNTYLLVNYQHPDDSNQAYFPKIVVVLGLSIAELSILML 74
MGD+N L L + YLLVNYQHPDD NQAYFPK+VVVLGL++A LSILML
Sbjct: 1 MGDFNVALVIVAAVVSVLVLLVSVYLLVNYQHPDDVNQAYFPKLVVVLGLTVAVLSILML 60

Query: 73 PADIANQRACQNSV 32
PAD+AN++AC+ +V
Sbjct: 61 PADVANRQACRKAV 74



Score = 25.4 bits (54), Expect(2) = 5e-19
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3

Query: 42 RTLCYNGACSFTLP 1
R YNGACS TLP
Sbjct: 71 RKAVYNGACSLTLP 84


>tr|Q658I5|Q658I5_ORYSJ Os06g0128200 protein OS=Oryza sativa subsp.
japonica GN=P0538C01.4-1 PE=2 SV=1
Length = 510

Score = 91.3 bits (225), Expect(2) = 3e-18
Identities = 42/74 (56%), Positives = 56/74 (75%)
Frame = -2

Query: 253 MGDYNXXXXXXXXXXXXLSLFFNTYLLVNYQHPDDSNQAYFPKIVVVLGLSIAELSILML 74
MGD+N L L + YLL+NYQHPDD+NQAYFPK+VVVLG+++A LSILML
Sbjct: 1 MGDFNVALVIVAAVVSVLVLLVSVYLLINYQHPDDANQAYFPKLVVVLGITVALLSILML 60

Query: 73 PADIANQRACQNSV 32
PAD+AN++AC+ ++
Sbjct: 61 PADVANRQACRRAI 74



Score = 23.5 bits (49), Expect(2) = 3e-18
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3

Query: 42 RTLCYNGACSFTLP 1
R Y+GACS TLP
Sbjct: 71 RRAIYSGACSLTLP 84


>tr|B8B1Y6|B8B1Y6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_21464 PE=4 SV=1
Length = 510

Score = 91.3 bits (225), Expect(2) = 3e-18
Identities = 42/74 (56%), Positives = 56/74 (75%)
Frame = -2

Query: 253 MGDYNXXXXXXXXXXXXLSLFFNTYLLVNYQHPDDSNQAYFPKIVVVLGLSIAELSILML 74
MGD+N L L + YLL+NYQHPDD+NQAYFPK+VVVLG+++A LSILML
Sbjct: 1 MGDFNVALVIVAAVVSVLVLLVSVYLLINYQHPDDANQAYFPKLVVVLGITVALLSILML 60

Query: 73 PADIANQRACQNSV 32
PAD+AN++AC+ ++
Sbjct: 61 PADVANRQACRRAI 74



Score = 23.5 bits (49), Expect(2) = 3e-18
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3

Query: 42 RTLCYNGACSFTLP 1
R Y+GACS TLP
Sbjct: 71 RRAIYSGACSLTLP 84


>tr|Q658I4|Q658I4_ORYSJ LMBR1 integral membrane family protein-like
OS=Oryza sativa subsp. japonica GN=P0538C01.4-2 PE=4
SV=1
Length = 440

Score = 91.3 bits (225), Expect(2) = 3e-18
Identities = 42/74 (56%), Positives = 56/74 (75%)
Frame = -2

Query: 253 MGDYNXXXXXXXXXXXXLSLFFNTYLLVNYQHPDDSNQAYFPKIVVVLGLSIAELSILML 74
MGD+N L L + YLL+NYQHPDD+NQAYFPK+VVVLG+++A LSILML
Sbjct: 1 MGDFNVALVIVAAVVSVLVLLVSVYLLINYQHPDDANQAYFPKLVVVLGITVALLSILML 60

Query: 73 PADIANQRACQNSV 32
PAD+AN++AC+ ++
Sbjct: 61 PADVANRQACRRAI 74



Score = 23.5 bits (49), Expect(2) = 3e-18
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3

Query: 42 RTLCYNGACSFTLP 1
R Y+GACS TLP
Sbjct: 71 RRAIYSGACSLTLP 84


>tr|A3B7Z5|A3B7Z5_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_019167 PE=4 SV=1
Length = 402

Score = 91.3 bits (225), Expect(2) = 3e-18
Identities = 42/74 (56%), Positives = 56/74 (75%)
Frame = -2

Query: 253 MGDYNXXXXXXXXXXXXLSLFFNTYLLVNYQHPDDSNQAYFPKIVVVLGLSIAELSILML 74
MGD+N L L + YLL+NYQHPDD+NQAYFPK+VVVLG+++A LSILML
Sbjct: 1 MGDFNVALVIVAAVVSVLVLLVSVYLLINYQHPDDANQAYFPKLVVVLGITVALLSILML 60

Query: 73 PADIANQRACQNSV 32
PAD+AN++AC+ ++
Sbjct: 61 PADVANRQACRRAI 74



Score = 23.5 bits (49), Expect(2) = 3e-18
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3

Query: 42 RTLCYNGACSFTLP 1
R Y+GACS TLP
Sbjct: 71 RRAIYSGACSLTLP 84


>tr|Q9M028|Q9M028_ARATH Putative uncharacterized protein T10O8_170
OS=Arabidopsis thaliana GN=T10O8_170 PE=2 SV=1
Length = 509

Score = 90.1 bits (222), Expect(2) = 7e-18
Identities = 43/74 (58%), Positives = 53/74 (71%)
Frame = -2

Query: 253 MGDYNXXXXXXXXXXXXLSLFFNTYLLVNYQHPDDSNQAYFPKIVVVLGLSIAELSILML 74
MGD+N + + YLLVNYQHPDD+NQAYFPK VVV GLSIA +SILML
Sbjct: 1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILML 60

Query: 73 PADIANQRACQNSV 32
PAD+AN+ AC++S+
Sbjct: 61 PADVANRHACRHSI 74



Score = 23.5 bits (49), Expect(2) = 7e-18
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3

Query: 30 YNGACSFTLP 1
YNGAC+ TLP
Sbjct: 75 YNGACNLTLP 84


>tr|Q94C82|Q94C82_ARATH Putative uncharacterized protein At3g08930
(Uncharacterized protein At3g08930.1) (At3g08930)
(Putative uncharacterized protein) OS=Arabidopsis
thaliana GN=At3g08930 PE=2 SV=1
Length = 509

Score = 89.0 bits (219), Expect(2) = 1e-17
Identities = 42/74 (56%), Positives = 53/74 (71%)
Frame = -2

Query: 253 MGDYNXXXXXXXXXXXXLSLFFNTYLLVNYQHPDDSNQAYFPKIVVVLGLSIAELSILML 74
MGD+N + + YLLVNYQHPDD+NQAYFPK VVV GLSIA +SILML
Sbjct: 1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILML 60

Query: 73 PADIANQRACQNSV 32
PAD+AN+ AC++++
Sbjct: 61 PADVANRHACRHAI 74



Score = 23.9 bits (50), Expect(2) = 1e-17
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3

Query: 42 RTLCYNGACSFTLP 1
R YNGAC+ TLP
Sbjct: 71 RHAIYNGACNLTLP 84


>tr|Q9SR93|Q9SR93_ARATH T16O11.13 protein OS=Arabidopsis thaliana
GN=T16O11.13 PE=4 SV=1
Length = 482

Score = 89.0 bits (219), Expect(2) = 1e-17
Identities = 42/74 (56%), Positives = 53/74 (71%)
Frame = -2

Query: 253 MGDYNXXXXXXXXXXXXLSLFFNTYLLVNYQHPDDSNQAYFPKIVVVLGLSIAELSILML 74
MGD+N + + YLLVNYQHPDD+NQAYFPK VVV GLSIA +SILML
Sbjct: 1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILML 60

Query: 73 PADIANQRACQNSV 32
PAD+AN+ AC++++
Sbjct: 61 PADVANRHACRHAI 74



Score = 23.9 bits (50), Expect(2) = 1e-17
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3

Query: 42 RTLCYNGACSFTLP 1
R YNGAC+ TLP
Sbjct: 71 RHAIYNGACNLTLP 84