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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918297
Clone id YMU001_000111_G10
Library
Length 408
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000111_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTTTTAGTTGTCAACGGATGATCGGGGAGACGCGGAATGCGCACTGGGACGCTGTGCCA
CTGGAATGCCAGATTATTTTATCTCTCCAGATGAGTGGTTTTATTACAACCGCATGAGCG
GGGAATTCTTCACAGTATCATCTGATGGGACACTCGTGCCGTATGCCTTTGAAGGCCCTT
GCTGACGGCTTAAATTCTTAGTTGTCAAGGATATAAGGAGGCCAGATGGATGGGGACTGT
GCACTGGAATGCCAGCTTTTTTTCTCTCTCCAGATGAGTGGTTCTTTTACAACCGCATGA
GGAGGGAATTCTTCAGAGTATCATCTGATGGGACACTTGTGTCTTATGATCCCACTATTT
AAGCATGTTGCTATACTCTAGGGCTTTAGCCAGAACATTAGTTTCATC
■■Homology search results ■■ -
sp_hit_id A5GIT9
Definition sp|A5GIT9|RS3_SYNPW 30S ribosomal protein S3 OS=Synechococcus sp. (strain WH7803)
Align length 38
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918297|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_G10.
         (408 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5GIT9|RS3_SYNPW 30S ribosomal protein S3 OS=Synechococcus sp...    34   0.26 
sp|Q46IR5|RS3_PROMT 30S ribosomal protein S3 OS=Prochlorococcus ...    32   0.74 
sp|A2C4Z3|RS3_PROM1 30S ribosomal protein S3 OS=Prochlorococcus ...    32   0.74 
sp|Q3AUX0|RS3_SYNS9 30S ribosomal protein S3 OS=Synechococcus sp...    32   0.97 
sp|Q0ID11|RS3_SYNS3 30S ribosomal protein S3 OS=Synechococcus sp...    32   0.97 
sp|Q06671|ATG23_YEAST Autophagy-related protein 23 OS=Saccharomy...    32   0.97 
sp|A7A1V1|ATG23_YEAS7 Autophagy-related protein 23 OS=Saccharomy...    32   0.97 
sp|Q5F289|SPEM1_MOUSE Spermatid maturation protein 1 OS=Mus musc...    31   1.7  
sp|Q7V9W8|RS3_PROMA 30S ribosomal protein S3 OS=Prochlorococcus ...    31   1.7  
sp|Q7V537|RS3_PROMM 30S ribosomal protein S3 OS=Prochlorococcus ...    31   2.2  
sp|Q5NCP0|RNF43_MOUSE RING finger protein 43 OS=Mus musculus GN=...    30   3.7  
sp|Q9ER99|RSCA1_MOUSE Regulatory solute carrier protein family 1...    30   4.8  
sp|Q30Z13|GLGA_DESDG Glycogen synthase OS=Desulfovibrio desulfur...    30   4.8  
sp|A3KP40|CH034_DANRE Uncharacterized protein C8orf34 homolog OS...    30   4.8  
sp|Q7U4J4|RS3_SYNPX 30S ribosomal protein S3 OS=Synechococcus sp...    29   6.3  
sp|O60393|NOBOX_HUMAN Homeobox protein NOBOX OS=Homo sapiens GN=...    29   6.3  
sp|Q9CAJ0|PP2C6_ARATH Protein phosphatase 2C HAB1 OS=Arabidopsis...    29   6.5  
sp|A2CC33|RS3_PROM3 30S ribosomal protein S3 OS=Prochlorococcus ...    29   8.2  
sp|A0JMF1|CQ068_DANRE Uncharacterized protein C17orf68 homolog O...    29   8.2  

>sp|A5GIT9|RS3_SYNPW 30S ribosomal protein S3 OS=Synechococcus sp.
           (strain WH7803) GN=rpsC PE=3 SV=1
          Length = 243

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 241 HSPHPSGLLISLTTKNLSRQQGPSKAYGTSVPSDDTVK 128
           H  HP+GL + +T ++ SR    SK+Y T +  DD ++
Sbjct: 3   HKIHPTGLRLGITQEHRSRWYASSKSYPTLLKEDDRIR 40


>sp|Q46IR5|RS3_PROMT 30S ribosomal protein S3 OS=Prochlorococcus
           marinus (strain NATL2A) GN=rpsC PE=3 SV=1
          Length = 244

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 241 HSPHPSGLLISLTTKNLSRQQGPSKAYGTSVPSDDTVK 128
           H  HP+G+ + +T ++ S+   PSK Y   +  DD ++
Sbjct: 3   HKIHPTGIRLGITQEHRSKWYAPSKTYPLLLQEDDRIR 40


>sp|A2C4Z3|RS3_PROM1 30S ribosomal protein S3 OS=Prochlorococcus
           marinus (strain NATL1A) GN=rpsC PE=3 SV=1
          Length = 244

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 241 HSPHPSGLLISLTTKNLSRQQGPSKAYGTSVPSDDTVK 128
           H  HP+G+ + +T ++ S+   PSK Y   +  DD ++
Sbjct: 3   HKIHPTGIRLGITQEHRSKWYAPSKTYPLLLQEDDRIR 40


>sp|Q3AUX0|RS3_SYNS9 30S ribosomal protein S3 OS=Synechococcus sp.
           (strain CC9902) GN=rpsC PE=3 SV=1
          Length = 242

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 241 HSPHPSGLLISLTTKNLSRQQGPSKAYGTSVPSDDTVK 128
           H  HP+GL + +T ++ SR    SK Y + +  DD ++
Sbjct: 3   HKIHPTGLRLGITQEHRSRWYASSKTYPSLLQEDDRIR 40


>sp|Q0ID11|RS3_SYNS3 30S ribosomal protein S3 OS=Synechococcus sp.
           (strain CC9311) GN=rpsC PE=3 SV=1
          Length = 243

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 241 HSPHPSGLLISLTTKNLSRQQGPSKAYGTSVPSDDTVK 128
           H  HP+GL + +T ++ SR    SK+Y   +  DD ++
Sbjct: 3   HKIHPTGLRLGITQEHRSRWYASSKSYPALLQEDDRIR 40


>sp|Q06671|ATG23_YEAST Autophagy-related protein 23 OS=Saccharomyces
           cerevisiae GN=ATG23 PE=1 SV=1
          Length = 453

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 287 KEPLIWREKKSWHSSAQSPSIWPPYILD 204
           +E L+W+E+KSWH   ++ +    Y++D
Sbjct: 85  REQLLWKERKSWHIKQETDAAPADYVID 112


>sp|A7A1V1|ATG23_YEAS7 Autophagy-related protein 23 OS=Saccharomyces
           cerevisiae (strain YJM789) GN=ATG23 PE=3 SV=1
          Length = 453

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 287 KEPLIWREKKSWHSSAQSPSIWPPYILD 204
           +E L+W+E+KSWH   ++ +    Y++D
Sbjct: 85  REQLLWKERKSWHIEQETDAAPADYVID 112


>sp|Q5F289|SPEM1_MOUSE Spermatid maturation protein 1 OS=Mus
           musculus GN=Spem1 PE=1 SV=1
          Length = 310

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
 Frame = -2

Query: 344 RHKCPIR*Y---SEEFPPHAVVKEPLI----WREKKSWHSSAQSPSIWPPYILDN*EFKP 186
           R +CPI       +E PPH   + P I    W + K W        +W P+  D  E  P
Sbjct: 119 RARCPIAWAPDTDDEKPPH---QHPAICSRHWNDSKDWEGFQSMQEVWEPWTQDGLEQPP 175

Query: 185 SARAFKGIRHECPIR 141
               F+      P++
Sbjct: 176 QTIRFQPAVEARPLK 190


>sp|Q7V9W8|RS3_PROMA 30S ribosomal protein S3 OS=Prochlorococcus
           marinus GN=rpsC PE=3 SV=1
          Length = 243

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 241 HSPHPSGLLISLTTKNLSRQQGPSKAYGTSVPSDDTVK 128
           H  HP+GL + +T ++ SR    SK Y   +  DD ++
Sbjct: 3   HKIHPNGLRLGITQEHRSRWYASSKTYPLLLQEDDRIR 40


>sp|Q7V537|RS3_PROMM 30S ribosomal protein S3 OS=Prochlorococcus
           marinus (strain MIT 9313) GN=rpsC PE=3 SV=1
          Length = 242

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 241 HSPHPSGLLISLTTKNLSRQQGPSKAYGTSVPSDDTVK 128
           H  HP+GL + +T ++ SR    SK Y   +  DD ++
Sbjct: 3   HKIHPTGLRLGITQEHRSRWYATSKMYPILLQEDDRIR 40
tr_hit_id B5IPQ9
Definition tr|B5IPQ9|B5IPQ9_9CHRO Ribosomal protein S3 OS=Cyanobium sp. PCC 7001
Align length 38
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918297|Adiantum capillus-veneris mRNA, clone:
YMU001_000111_G10.
         (408 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5IPQ9|B5IPQ9_9CHRO Ribosomal protein S3 OS=Cyanobium sp. PCC...    36   1.1  
tr|A3YUL3|A3YUL3_9SYNE 30S ribosomal protein S3 OS=Synechococcus...    36   1.1  
tr|A4CSM1|A4CSM1_SYNPV 30S ribosomal protein S3 OS=Synechococcus...    34   4.2  
tr|A9BCP1|A9BCP1_PROM4 30S ribosomal protein S3 OS=Prochlorococc...    33   5.5  

>tr|B5IPQ9|B5IPQ9_9CHRO Ribosomal protein S3 OS=Cyanobium sp. PCC
           7001 GN=rpsC PE=4 SV=1
          Length = 242

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 241 HSPHPSGLLISLTTKNLSRQQGPSKAYGTSVPSDDTVK 128
           H  HP+GL + +T  + SR   PSK Y T +  DD ++
Sbjct: 3   HKIHPTGLRLGITQDHRSRWYAPSKTYPTLLQEDDRIR 40


>tr|A3YUL3|A3YUL3_9SYNE 30S ribosomal protein S3 OS=Synechococcus
           sp. WH 5701 GN=rpsC PE=3 SV=1
          Length = 242

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 241 HSPHPSGLLISLTTKNLSRQQGPSKAYGTSVPSDDTVK 128
           H  HP+GL + +T  + SR   PSK Y T +  DD ++
Sbjct: 3   HKIHPTGLRLGITQDHRSRWYAPSKTYPTLLQEDDRIR 40


>tr|A4CSM1|A4CSM1_SYNPV 30S ribosomal protein S3 OS=Synechococcus
           sp. (strain WH7805) GN=rpsC PE=3 SV=1
          Length = 243

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 241 HSPHPSGLLISLTTKNLSRQQGPSKAYGTSVPSDDTVK 128
           H  HP+GL + +T ++ SR    SK+Y T +  DD ++
Sbjct: 3   HKIHPTGLRLGITQEHRSRWYASSKSYPTLLQEDDRIR 40


>tr|A9BCP1|A9BCP1_PROM4 30S ribosomal protein S3 OS=Prochlorococcus
           marinus (strain MIT 9211) GN=rpsC PE=3 SV=1
          Length = 243

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 241 HSPHPSGLLISLTTKNLSRQQGPSKAYGTSVPSDDTVK 128
           H  HP+GL + +T ++ SR    SK Y T +  DD ++
Sbjct: 3   HKIHPNGLRLGITQEHRSRWYASSKTYPTLLQEDDRIR 40