BP918298 |
Clone id |
YMU001_000111_G11 |
Library |
YMU01 |
Length |
464 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000111_G11. |
Accession |
BP918298 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL826Contig1 |
Sequence |
CATCCAATTCAGGCCAGCAAGCTGATAGTCCCTCATTTTCCCTTGAATACAAGATGGCTG CACTAACAACCGTGTACCACCTCCACCTACATTGCTACCAAGGGCATCTTCTTCTTCCTT CAAATATTCCTCATCCTCCTCTTCTTCTGTATGCTTGGAGCTATGTCTCCCCCTGCCTCT TGTAGCTTTGCCACCTGAAGCTGATTGGGCACCTTGTGCAAAATGCGCAAATATTTCCGT TTGCTGCAGAAGGAACTTTAATCGACCTTTCGCTTTGCTATTCATGTCTGCATCAATTGA CGCATTTTGTTGCTGATAAAACCTGTCGAGCTCCTCTTTCTTCTTCCTCTTCATCTCTCT CAAGCGTTGCTTTTCTCTTCTGGCAATGGCTTGTTTCGAACGACAGATGGGAGTCTCATC ATCAGTCTCTGCATCTTCCTCCTCGCCCTCATCATCACCCTTGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8RWY3 |
Definition |
sp|Q8RWY3|ISW2_ARATH Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana |
Align length |
110 |
Score (bit) |
118.0 |
E-value |
1.0e-26 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8A881 |
Definition |
tr|B8A881|B8A881_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica |
Align length |
103 |
Score (bit) |
117.0 |
E-value |
3.0e-25 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918298|Adiantum capillus-veneris mRNA, clone: YMU001_000111_G11. (464 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8A881|B8A881_ORYSI Putative uncharacterized protein OS=Oryza... 117 3e-25 tr|B7EXS1|B7EXS1_ORYSJ cDNA clone:001-115-D05, full insert seque... 117 3e-25 tr|A2ZT60|A2ZT60_ORYSJ Putative uncharacterized protein OS=Oryza... 117 3e-25 tr|Q3E9E6|Q3E9E6_ARATH Uncharacterized protein At5g18620.2 OS=Ar... 115 8e-25 tr|Q5WN07|Q5WN07_ORYSJ Os05g0150300 protein OS=Oryza sativa subs... 115 1e-24 tr|A3B010|A3B010_ORYSJ Putative uncharacterized protein OS=Oryza... 115 1e-24 tr|A2Y0G1|A2Y0G1_ORYSI Putative uncharacterized protein OS=Oryza... 115 1e-24 tr|A7NW74|A7NW74_VITVI Chromosome chr5 scaffold_2, whole genome ... 114 3e-24 tr|A9SV93|A9SV93_PHYPA SNF2 family DNA-dependent ATPase OS=Physc... 107 2e-22 tr|A9SY70|A9SY70_PHYPA SNF2 family DNA-dependent ATPase OS=Physc... 104 2e-21 tr|Q014J0|Q014J0_OSTTA Chromatin-remodelling complex ATPase ISWI... 63 6e-09 tr|A4S0Q6|A4S0Q6_OSTLU Predicted protein OS=Ostreococcus lucimar... 60 5e-08 tr|Q4JLR9|Q4JLR9_CHLRE Chromatin-remodelling complex ATPase ISWI... 59 2e-07 tr|A8IK98|A8IK98_CHLRE SNF2 superfamily protein (Fragment) OS=Ch... 59 2e-07 tr|B7G256|B7G256_PHATR Predicted protein OS=Phaeodactylum tricor... 43 0.009 tr|Q5B1D7|Q5B1D7_EMENI Putative uncharacterized protein OS=Emeri... 43 0.009 tr|B8C4D6|B8C4D6_THAPS Predicted protein (Fragment) OS=Thalassio... 42 0.012 tr|B6KDR5|B6KDR5_TOXGO Chromatin remodeling complex protein SNF2... 41 0.026 tr|B0CXC1|B0CXC1_LACBS SNF2 family DNA-dependent ATPase OS=Lacca... 41 0.026 tr|A7QM16|A7QM16_VITVI Chromosome undetermined scaffold_123, who... 40 0.057 tr|Q7RXH5|Q7RXH5_NEUCR Chromatin remodelling complex ATPase chai... 40 0.057 tr|A8NAS8|A8NAS8_COPC7 Putative uncharacterized protein OS=Copri... 39 0.13 tr|B8M9E7|B8M9E7_9EURO SNF2 family helicase/ATPase, putative OS=... 39 0.17 tr|A4RDD8|A4RDD8_MAGGR Putative uncharacterized protein OS=Magna... 39 0.17 tr|Q8SQJ7|Q8SQJ7_ENCCU GLOBAL TRANSCRIPTIONAL ACTIVATOR (SNF2/RA... 38 0.22 tr|B7G0W1|B7G0W1_PHATR Predicted protein (Fragment) OS=Phaeodact... 38 0.28 tr|Q7YYQ2|Q7YYQ2_CRYPV SNF2 helicase, possible OS=Cryptosporidiu... 38 0.28 tr|Q5CVU2|Q5CVU2_CRYPV SNF2L ortholog with a SWI/SNF2 like ATpas... 38 0.28 tr|Q5CJJ1|Q5CJJ1_CRYHO Putative uncharacterized protein (Fragmen... 38 0.28 tr|Q5CIW4|Q5CIW4_CRYHO Chromatin remodelling complex protein SNF... 38 0.28
>tr|B8A881|B8A881_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_01941 PE=4 SV=1 Length = 1259
Score = 117 bits (293), Expect = 3e-25 Identities = 64/103 (62%), Positives = 71/103 (68%) Frame = -3
Query: 309 QNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSKHTXXXXXX 130 QNA++DADMN+K KGRLK+LLQQTEIFAHF K RGRGRH+SK T Sbjct: 145 QNAAVDADMNNKGKGRLKYLLQQTEIFAHFAKGNQSKE--KKPRGRGRHASKMTEEEEDE 202
Query: 129 XXXXXXEDALGSNVGGGGTRLLVQPSCIQGKMRDYQLAGLNWM 1 EDAL G GGTRLL QPSCI+GKMRDYQLAGLNW+ Sbjct: 203 EYLKEEEDALA---GSGGTRLLSQPSCIKGKMRDYQLAGLNWL 242
>tr|B7EXS1|B7EXS1_ORYSJ cDNA clone:001-115-D05, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 1107
Score = 117 bits (293), Expect = 3e-25 Identities = 64/103 (62%), Positives = 71/103 (68%) Frame = -3
Query: 309 QNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSKHTXXXXXX 130 QNA++DADMN+K KGRLK+LLQQTEIFAHF K RGRGRH+SK T Sbjct: 145 QNAAVDADMNNKGKGRLKYLLQQTEIFAHFAKGNQSKE--KKPRGRGRHASKMTEEEEDE 202
Query: 129 XXXXXXEDALGSNVGGGGTRLLVQPSCIQGKMRDYQLAGLNWM 1 EDAL G GGTRLL QPSCI+GKMRDYQLAGLNW+ Sbjct: 203 EYLKEEEDALA---GSGGTRLLSQPSCIKGKMRDYQLAGLNWL 242
>tr|A2ZT60|A2ZT60_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_001732 PE=4 SV=1 Length = 1122
Score = 117 bits (293), Expect = 3e-25 Identities = 64/103 (62%), Positives = 71/103 (68%) Frame = -3
Query: 309 QNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSKHTXXXXXX 130 QNA++DADMN+K KGRLK+LLQQTEIFAHF K RGRGRH+SK T Sbjct: 145 QNAAVDADMNNKGKGRLKYLLQQTEIFAHFAKGNQSKE--KKPRGRGRHASKMTEEEEDE 202
Query: 129 XXXXXXEDALGSNVGGGGTRLLVQPSCIQGKMRDYQLAGLNWM 1 EDAL G GGTRLL QPSCI+GKMRDYQLAGLNW+ Sbjct: 203 EYLKEEEDALA---GSGGTRLLSQPSCIKGKMRDYQLAGLNWL 242
>tr|Q3E9E6|Q3E9E6_ARATH Uncharacterized protein At5g18620.2 OS=Arabidopsis thaliana GN=At5g18620 PE=4 SV=1 Length = 1072
Score = 115 bits (289), Expect = 8e-25 Identities = 61/110 (55%), Positives = 72/110 (65%) Frame = -3
Query: 330 LDRFYQQQNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSKH 151 + + QNASIDADMN+K KGR+K+LLQQTE+FAHF K +GRGRHSSK Sbjct: 100 IQQILDSQNASIDADMNNKGKGRIKYLLQQTELFAHFAKSDPSPSQKKG-KGRGRHSSKL 158
Query: 150 TXXXXXXXXXXXXEDALGSNVGGGGTRLLVQPSCIQGKMRDYQLAGLNWM 1 T + G VG GGTRLL QP+CIQGK+RDYQLAGLNW+ Sbjct: 159 TEEEEDEECLK---EEEGGIVGSGGTRLLTQPACIQGKLRDYQLAGLNWL 205
>tr|Q5WN07|Q5WN07_ORYSJ Os05g0150300 protein OS=Oryza sativa subsp. japonica GN=P0001A07.2 PE=4 SV=1 Length = 1158
Score = 115 bits (287), Expect = 1e-24 Identities = 63/103 (61%), Positives = 71/103 (68%) Frame = -3
Query: 309 QNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSKHTXXXXXX 130 QN +IDADMN+K KGRLK+LLQQTEIFAHF K +RGRGRH+SK T Sbjct: 199 QNKAIDADMNNKGKGRLKYLLQQTEIFAHFAKGNQSTE--KKSRGRGRHASKMTEEEEDE 256
Query: 129 XXXXXXEDALGSNVGGGGTRLLVQPSCIQGKMRDYQLAGLNWM 1 EDAL G GGTRL+ QPSCI+GKMRDYQLAGLNW+ Sbjct: 257 EYLKEEEDALD---GAGGTRLVSQPSCIKGKMRDYQLAGLNWL 296
>tr|A3B010|A3B010_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_016382 PE=4 SV=1 Length = 1152
Score = 115 bits (287), Expect = 1e-24 Identities = 63/103 (61%), Positives = 71/103 (68%) Frame = -3
Query: 309 QNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSKHTXXXXXX 130 QN +IDADMN+K KGRLK+LLQQTEIFAHF K +RGRGRH+SK T Sbjct: 199 QNKAIDADMNNKGKGRLKYLLQQTEIFAHFAKGNQSTE--KKSRGRGRHASKMTEEEEDE 256
Query: 129 XXXXXXEDALGSNVGGGGTRLLVQPSCIQGKMRDYQLAGLNWM 1 EDAL G GGTRL+ QPSCI+GKMRDYQLAGLNW+ Sbjct: 257 EYLKEEEDALD---GAGGTRLVSQPSCIKGKMRDYQLAGLNWL 296
>tr|A2Y0G1|A2Y0G1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_18476 PE=4 SV=1 Length = 1157
Score = 115 bits (287), Expect = 1e-24 Identities = 63/103 (61%), Positives = 71/103 (68%) Frame = -3
Query: 309 QNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSKHTXXXXXX 130 QN +IDADMN+K KGRLK+LLQQTEIFAHF K +RGRGRH+SK T Sbjct: 198 QNKAIDADMNNKGKGRLKYLLQQTEIFAHFAKGNQSTE--KKSRGRGRHASKMTEEEEDE 255
Query: 129 XXXXXXEDALGSNVGGGGTRLLVQPSCIQGKMRDYQLAGLNWM 1 EDAL G GGTRL+ QPSCI+GKMRDYQLAGLNW+ Sbjct: 256 EYLKEEEDALD---GAGGTRLVSQPSCIKGKMRDYQLAGLNWL 295
>tr|A7NW74|A7NW74_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019809001 PE=4 SV=1 Length = 1020
Score = 114 bits (284), Expect = 3e-24 Identities = 62/103 (60%), Positives = 70/103 (67%) Frame = -3
Query: 309 QNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSKHTXXXXXX 130 QNA+IDADMN++ KGRLK+LLQQTEIFAHF K T+GRGRH+SK T Sbjct: 54 QNAAIDADMNNRGKGRLKYLLQQTEIFAHFAKGDQSTSQKK-TKGRGRHASKVTEEEEDE 112
Query: 129 XXXXXXEDALGSNVGGGGTRLLVQPSCIQGKMRDYQLAGLNWM 1 ED L G G TRL+ QPSCIQGKMRDYQLAGLNW+ Sbjct: 113 ECLKEEEDGLS---GTGNTRLVTQPSCIQGKMRDYQLAGLNWL 152
>tr|A9SV93|A9SV93_PHYPA SNF2 family DNA-dependent ATPase OS=Physcomitrella patens subsp. patens GN=CHR1527 PE=4 SV=1 Length = 1031
Score = 107 bits (268), Expect = 2e-22 Identities = 58/110 (52%), Positives = 71/110 (64%) Frame = -3
Query: 330 LDRFYQQQNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSKH 151 +D+F +QN +D+DMN+KAKGRLKFLLQQTEIFAHF K +GRH SK Sbjct: 73 VDQFLAEQNKLVDSDMNTKAKGRLKFLLQQTEIFAHFANGPQSAKDAKKA-SKGRHGSKL 131
Query: 150 TXXXXXXXXXXXXEDALGSNVGGGGTRLLVQPSCIQGKMRDYQLAGLNWM 1 T ++ +G+ GTRLLVQPSCI GKMR+YQLAGLNW+ Sbjct: 132 TEEEEDKEYLKEDDEDVGA---ARGTRLLVQPSCINGKMREYQLAGLNWL 178
>tr|A9SY70|A9SY70_PHYPA SNF2 family DNA-dependent ATPase OS=Physcomitrella patens subsp. patens GN=CHR1529 PE=4 SV=1 Length = 1032
Score = 104 bits (259), Expect = 2e-21 Identities = 58/110 (52%), Positives = 68/110 (61%) Frame = -3
Query: 330 LDRFYQQQNASIDADMNSKAKGRLKFLLQQTEIFAHFXXXXXXXXXGKATRGRGRHSSKH 151 +D+F +QN +D+DMN+KAKGRLKFLLQQTEIFAHF K +GRH SK Sbjct: 75 VDQFLAEQNKLVDSDMNTKAKGRLKFLLQQTEIFAHFANGPQSAKDAKKA-SKGRHGSKL 133
Query: 150 TXXXXXXXXXXXXEDALGSNVGGGGTRLLVQPSCIQGKMRDYQLAGLNWM 1 T ED + GTRLLVQP CI GKMR+YQLAGLNW+ Sbjct: 134 TEEEEDKEYLKEDEDEGAAR----GTRLLVQPQCINGKMREYQLAGLNWL 179
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