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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918307
Clone id YMU001_000112_A04
Library
Length 589
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000112_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGGCGCATTGGTTTTGACATCGATCAGGCAATTTCTTGCCTTCGACACTCTTTCTGACAT
CCGCGAGAGTGGATTGTCTCTCGGCTAGTTTTGACACTGATTTCTGCAATCAGCTAGATT
CTGACATTGGGTCTTGACATTAGAGGCGTTTCCGACACCGACTTTAGTGACTATCGACAC
CGGCAAGTGCTTCCGTTTGGTGGCAAAAGGCGGCATTGATTTCATTTTTTGGCATCGAAT
TCGCCGATAATTTTACTCATGGCATTCACGGCGAGGTACCTCTGTCATAGAGGAGTGACG
CCCGACATATGTATCAAGTACATTTCCATCCGGTGACAAAAATCAACACCAACATTCCTA
GTCTACATTGACACCCGGTTTTATAGGGGAGTTTCTAGCACACATCAACCACTTTTTTTT
GCGGTCTCTTGAGAGACGCTTTTCTGGAGCACACTGCTCCAAGGCAAAGTTGTCAGCATC
AACATTACAGCTGGTGTACATGTTGAAGACCCAGTCGACAGACATTTTTTTCAATTGAGA
TGTAGACTTGGGCTACGGCCATACAGGTCGTGTCTTCACAATGGTTATA
■■Homology search results ■■ -
sp_hit_id P03317
Definition sp|P03317|POLN_SINDV Non-structural polyprotein OS=Sindbis virus
Align length 44
Score (bit) 30.8
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918307|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_A04.
         (589 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P03317|POLN_SINDV Non-structural polyprotein OS=Sindbis virus...    31   5.3  
sp|P27283|POLN_SINDO Non-structural polyprotein OS=Sindbis virus...    31   5.3  
sp|O59782|SULH3_SCHPO Probable sulfate permease C320.05 OS=Schiz...    30   6.9  
sp|P48651|PTSS1_HUMAN Phosphatidylserine synthase 1 OS=Homo sapi...    30   9.0  

>sp|P03317|POLN_SINDV Non-structural polyprotein OS=Sindbis virus PE=1
            SV=1
          Length = 2512

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -2

Query: 168  TKVGVGNASNVKTQCQNLADCRNQCQN*PRDNPLSRMSERVSKA 37
            T+ GVG A + +T+ +N+ADC+ +       NPL R  E V +A
Sbjct: 1341 TRDGVGAAPSYRTKRENIADCQEEAVV-NAANPLGRPGEGVCRA 1383


>sp|P27283|POLN_SINDO Non-structural polyprotein OS=Sindbis virus
            subtype Ockelbo (strain Edsbyn 82-5) PE=2 SV=1
          Length = 2514

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -2

Query: 168  TKVGVGNASNVKTQCQNLADCRNQCQN*PRDNPLSRMSERVSKA 37
            T+ GVG A + +T+ +N+ADC+ +       NPL R  E V +A
Sbjct: 1341 TRDGVGAAPSYRTKRENIADCQEEAVV-NAANPLGRPGEGVCRA 1383


>sp|O59782|SULH3_SCHPO Probable sulfate permease C320.05
           OS=Schizosaccharomyces pombe GN=SPCC320.05 PE=2 SV=1
          Length = 667

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 254 YSWHSRRGTSVIEE*RPTYVSSTFPSGDKNQHQHS*STLTPGFIGEFLAHIN 409
           + WHS  G +++ E + T +    P  +KN+      +L  G +  FLA I+
Sbjct: 295 FDWHSNYGIAILGEIKTTILLPKLPLPEKNKLHFITQSLQTGVMCSFLAFID 346


>sp|P48651|PTSS1_HUMAN Phosphatidylserine synthase 1 OS=Homo sapiens
           GN=PTDSS1 PE=1 SV=1
          Length = 473

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 257 SWHSRRGTSVIEE*RPTYVSSTFPSGDKNQHQHS*STLTPG 379
           SWH R+GT   E+  P +  +      + +++HS S +T G
Sbjct: 429 SWHHRKGTKGSEDSPPKHAGNNESHSSRRRNRHSKSKVTNG 469
tr_hit_id Q094I7
Definition tr|Q094I7|Q094I7_STIAU Aminotransferase, class III family OS=Stigmatella aurantiaca DW4/3-1
Align length 57
Score (bit) 35.8
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918307|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_A04.
         (589 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q094I7|Q094I7_STIAU Aminotransferase, class III family OS=Sti...    36   1.9  
tr|B8I979|B8I979_CLOCE Amino acid adenylation domain protein OS=...    36   1.9  

>tr|Q094I7|Q094I7_STIAU Aminotransferase, class III family
            OS=Stigmatella aurantiaca DW4/3-1 GN=STIAU_0525 PE=4 SV=1
          Length = 3433

 Score = 35.8 bits (81), Expect = 1.9
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +2

Query: 110  SARF*HWVLTLEAF---PTPTLVTIDTGKCFRLVAKGGIDFIFWHRIRR*FYSWHSR 271
            +AR    V TL AF       +  +  G  FR V KG +D  F+H + R  Y W  R
Sbjct: 1520 NARTARLVATLNAFFEAQHAPIQVVSFGSLFRFVLKGNLDLFFFHLVNRGVYVWEGR 1576


>tr|B8I979|B8I979_CLOCE Amino acid adenylation domain protein
            OS=Clostridium cellulolyticum H10 GN=Ccel_0977 PE=4 SV=1
          Length = 3739

 Score = 35.8 bits (81), Expect = 1.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 173  IDTGKCFRLVAKGGIDFIFWHRIRR*FYSWHSR 271
            ++ G  FR V KG I+ +F+H I+R  Y W  R
Sbjct: 1256 VNYGSLFRFVLKGDIELLFYHLIKRGIYVWEGR 1288