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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918326
Clone id YMU001_000112_B12
Library
Length 326
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000112_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACATGCGAATGGAGCTAACGATGACATGTCTTTGAATTTGTATTCGATGAGTCAATGGCA
TCTTCCTCCTTTTGAGCTACATATATGTTGAATAAGAGGAAAATTTAGGTCTATTATTTG
TAAGCTTGTTTCCTTGACTACAAGATTTGTAAGCACTATCTACGTCAAACAAAACCATCA
GCGAAGGTCCCTGCTTCAATAGTTGGCTCCATTCCAAAACATGAGGCATCGTTCTTTGAA
AGTTAATTGAGTGGTGCTAATGAGTGGGCCTTGTCATCTCCCCCACTTTGTATGGTAGCT
AGATAGGTTTTCACAATTTTTTGGTC
■■Homology search results ■■ -
sp_hit_id Q54PL2
Definition sp|Q54PL2|INT7_DICDI Integrator complex subunit 7 homolog OS=Dictyostelium discoideum
Align length 26
Score (bit) 29.6
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918326|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_B12.
         (326 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54PL2|INT7_DICDI Integrator complex subunit 7 homolog OS=Dic...    30   5.0  

>sp|Q54PL2|INT7_DICDI Integrator complex subunit 7 homolog
           OS=Dictyostelium discoideum GN=ints7 PE=3 SV=1
          Length = 1024

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 177 WFCLT*IVLTNLVVKETSLQIIDLNF 100
           WF L    L NL++KE S+Q+I+ NF
Sbjct: 604 WFKLILDYLNNLIIKENSVQLINNNF 629
tr_hit_id A7E4I4
Definition tr|A7E4I4|A7E4I4_SCLS1 Predicted protein OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
Align length 43
Score (bit) 33.1
E-value 7.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918326|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_B12.
         (326 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7E4I4|A7E4I4_SCLS1 Predicted protein OS=Sclerotinia scleroti...    33   7.0  

>tr|A7E4I4|A7E4I4_SCLS1 Predicted protein OS=Sclerotinia
           sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)
           GN=SS1G_00206 PE=4 SV=1
          Length = 202

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 19/43 (44%), Positives = 22/43 (51%)
 Frame = +1

Query: 133 LDYKICKHYLRQTKPSAKVPASIVGSIPKHEASFFES*LSGAN 261
           LDY I +HYLR   PS  VPAS + S   +E       LS  N
Sbjct: 33  LDYCIAEHYLRDMLPSIDVPASTIPSEFVNEYPLHHPDLSSGN 75