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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918328
Clone id YMU001_000112_C02
Library
Length 530
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000112_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GACATACTACCCATTTTGTGAGTCAAAAGCCTAAATCTGCTCAAAATTGCACTTTTTGAT
GTCCAAACCAAATTCCAAGTACATAGCCATGTTGCACAGGTCAAGGGCCACAAGCATGTC
AAGTTTCATCAAAATCAGAGGAAGTAGACATACAACGTGTAGGATGTCTACATGCTTATT
TTTTAGCCAAAAACCTATTGTGGGCACATGCATGGCTTCCCTAGTCCCTTTTGAGTTCTT
ATTTCAATTTTCAAGTCATTTGGGTAGTCAGAACTCAGTTTACCAGCAAAATCTGTAAAG
AACGCTAACTTTGGACTACTGAGTGCAACAGGATCCATGGCAGCCGCTAAGTTACCAGCA
AAGAAGAAAAGAATGAACAACAAAGATTACCTAGATGAAGTGGAGCCATTTGTAATACCA
GAAGGAACCATAAAGTCCATTACCACTTTGTTACAAAGCAACCTAGTGGAAGCAAACGAC
CTCAGAATATGCCAAAGCCTAGGACCCAACGCCAACGCCATTCCCCTGCG
■■Homology search results ■■ -
sp_hit_id Q2RYG3
Definition sp|Q2RYG3|MTGA_RHORT Monofunctional biosynthetic peptidoglycan transglycosylase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
Align length 40
Score (bit) 31.6
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918328|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_C02.
         (530 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2RYG3|MTGA_RHORT Monofunctional biosynthetic peptidoglycan t...    32   2.5  
sp|P26853|ATP6_MARPO ATP synthase subunit a OS=Marchantia polymo...    30   9.4  

>sp|Q2RYG3|MTGA_RHORT Monofunctional biosynthetic peptidoglycan
           transglycosylase OS=Rhodospirillum rubrum (strain ATCC
           11170 / NCIB 8255) GN=mtgA PE=3 SV=2
          Length = 230

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 517 RWRWVLGFGIF*GRLLPLGCFVTKW*WTLWFLLVLQMAPL 398
           RWRW        GRL+ LG F+    W L  L+V ++AP+
Sbjct: 7   RWRW--------GRLVLLGLFIVFLGWPLSLLMVFRVAPV 38


>sp|P26853|ATP6_MARPO ATP synthase subunit a OS=Marchantia
           polymorpha GN=ATP6 PE=3 SV=2
          Length = 252

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
 Frame = -2

Query: 418 VLQMAPLHLGNLCCSFFSS---LLVT*RLPWILLHSV 317
           ++Q+ P+H+GNL  SF +S   +L+T  L  +L+H V
Sbjct: 11  IIQLIPIHIGNLYFSFTNSSLFMLLTISLVLLLVHFV 47
tr_hit_id Q873H3
Definition tr|Q873H3|Q873H3_NEUCR Probable NsfA protein (Vesicular-fusion protein SEC18) OS=Neurospora crassa
Align length 104
Score (bit) 35.4
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918328|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_C02.
         (530 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q873H3|Q873H3_NEUCR Probable NsfA protein (Vesicular-fusion p...    35   1.8  
tr|B6HBP8|B6HBP8_PENCH Pc18g00330 protein OS=Penicillium chrysog...    35   3.1  
tr|A6LIG2|A6LIG2_PARD8 Putative uncharacterized protein OS=Parab...    34   4.0  

>tr|Q873H3|Q873H3_NEUCR Probable NsfA protein (Vesicular-fusion
           protein SEC18) OS=Neurospora crassa GN=B9B11.260 PE=3
           SV=1
          Length = 853

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
 Frame = +1

Query: 238 LISIFKSFG*SELSLPAKSVKNANFGLLSATGSMAAAKLPAKKKRMNNKDY---LDEVEP 408
           L ++ K+F  +ELS   KS  +  F      G+MA         ++N +D+   LDEV+P
Sbjct: 536 LATLTKNFSGAELSGLVKSATSYAFSRHIKVGTMAGVSEDVANMKVNRQDFLNALDEVKP 595

Query: 409 -FVIPEGTI------------KSITTLLQSNLVEANDLRICQSL 501
            F   E  +            KSIT++L+  L+  N++R  + L
Sbjct: 596 AFGADESELEKHLAYGVIHYSKSITSILEDGLLYVNNVRKLERL 639


>tr|B6HBP8|B6HBP8_PENCH Pc18g00330 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc18g00330 PE=4 SV=1
          Length = 848

 Score = 34.7 bits (78), Expect = 3.1
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = +1

Query: 268 SELSLPAKSVKNANFGLLSATGSMAAAKLPAKKKRMNNKDYLDEVE 405
           S+ S PA S+K AN    ++T    AAK PA KKR  N    D V+
Sbjct: 379 SDRSSPANSIKPANKKPATSTAKKGAAKKPAAKKRKVNDPDADSVD 424


>tr|A6LIG2|A6LIG2_PARD8 Putative uncharacterized protein
           OS=Parabacteroides distasonis (strain ATCC 8503 / DSM
           20701 / NCTC 11152) GN=BDI_3790 PE=4 SV=1
          Length = 130

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 364 KKRMNNKDYLDEVEPFVIPEGTIKSITTLLQSNLVEANDLR 486
           KK  NN D L    PF +PEG ++ +T  + S L E  + R
Sbjct: 2   KKEENNLDRLKGTNPFTVPEGYMEGLTERIMSQLPEKQEER 42