BP918337
Clone id YMU001_000112_C12
Library
Length 431
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000112_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ATCGATCTCTGTCTTCTCTGAAGCCCTATGGAAGCATAACTTTTATTACCGAGCTTGATC
CTGTATGAACATGGCCCCTAGAACTGACCCGACATTTGGGTCATCTAATCTACATTCCCT
CAGCTCTTGCACACTCGGTTAGAATGTGGATTCTCTAGCCGGCTTACTAGGATATTGTGT
AGATTTCAAGGATCCTCTTGCAGGCCTTGATTAATGCTTTGCCAATCTCGAAGAGGCTGA
GCGAAAGATGGGTTGCCTATTTAACCCAGCGGCACACGAGGATGTGTGCCAAATTAAGAG
GGGGGGAATGTTAGCAGTGGCTAACACATACGACACCGATTATGTAGCAAGTTAGGGATG
TGCTATTGTGCAAAATATTTCCTATTCATTGTATAAGGCCTTGTGCTCACTTAGGAGTTC
CAATTTGGATA
■■Homology search results ■■ -
sp_hit_id A2VCZ5
Definition sp|A2VCZ5|MD13L_DANRE Mediator of RNA polymerase II transcription subunit 13-like OS=Danio rerio
Align length 39
Score (bit) 31.2
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918337|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_C12.
(431 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A2VCZ5|MD13L_DANRE Mediator of RNA polymerase II transcriptio... 31 1.9
sp|Q54KV4|CK5P1_DICDI CDK5RAP1-like protein OS=Dictyostelium dis... 30 4.2
sp|A5FYH8|FENR_ACICJ Ferredoxin--NADP reductase OS=Acidiphilium ... 29 9.3

>sp|A2VCZ5|MD13L_DANRE Mediator of RNA polymerase II transcription
subunit 13-like OS=Danio rerio GN=zgc:153454 PE=2 SV=1
Length = 2102

Score = 31.2 bits (69), Expect = 1.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3

Query: 339 SVSYVLATANIPPLLIWHTSSCAAGLNRQPIFRSASSRL 223
++ Y ++TA PL W SSC N+ P+F AS L
Sbjct: 1992 ALGYFVSTAKAGPLPDWFWSSCPQAKNQCPLFLKASLHL 2030


>sp|Q54KV4|CK5P1_DICDI CDK5RAP1-like protein OS=Dictyostelium
discoideum GN=cdk5rap1 PE=3 SV=1
Length = 607

Score = 30.0 bits (66), Expect = 4.2
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2

Query: 251 GCLFNPAAHEDVCQIKRGGMLAVANTYDT-DYVAS*GCAIVQNISYSLYKALCSLRS 418
GC N + E +C I + ++N ++T D V C+I +N ++ L LR+
Sbjct: 115 GCQMNVSDEEVICSIMKSSGYTISNDFNTADIVFLNTCSIRENAEAKIWLRLTELRA 171


>sp|A5FYH8|FENR_ACICJ Ferredoxin--NADP reductase OS=Acidiphilium
cryptum (strain JF-5) GN=Acry_1452 PE=3 SV=1
Length = 339

Score = 28.9 bits (63), Expect = 9.3
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +3

Query: 48 TELDPV*TWPLELTRHLGHLIYIPSALAHSVR 143
T+L PV TW LEL+ H H++ PS S R
Sbjct: 254 TDLGPVATWGLELSLH--HVLVTPSTCETSTR 283


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918337|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_C12.
(431 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******