BP918340
Clone id YMU001_000112_D03
Library
Length 538
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000112_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AACTGGAAGAATTCCTTTTGTACATGAAGAGTCCTGTCTTCCTCACTACTTGACCTATGA
CACTATATCTGAAAGTGAGGGCAAGAGTAGTTGGAAACTGAAGTGATATAGAAAGATCAC
AATCTCGAGAATCAAATAACAAAGAACTGTTTGTGACACCCTCTAAATAACAAGCAAGAG
CACTTAGTTGTCCTGTGGAAGCATTCCAGACACCTTCAACAGAAAAAACATCACTAGCTG
ATTGAAATAGGTGTTCCAGCTGGAACTGGCTATGTGTGAAAATAAAAAGGCCATGAACCT
TTCCTCCTGAGCAAACCATGTTCTCAATCATAAGGGTTGTTGTAGTATTAGGGCCCACAA
TTTTGAAAGGGCTACAATCCTGACCGGTGCATTGCTTGTCCCAAGCAACATTTAATGGCT
GCTTGTACCAAGGAAATTGACAAACAGCAGTATCATCCTTCCACACATTGATACCTTGGG
GCACATAAGCATGCACCATCACCCCAATGTCAGTAGCTTCATCATCCTTCGTAAAAAC
■■Homology search results ■■ -
sp_hit_id Q5UQ60
Definition sp|Q5UQ60|YL662_MIMIV Uncharacterized protein L662 OS=Acanthamoeba polyphaga mimivirus
Align length 38
Score (bit) 30.0
E-value 7.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918340|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_D03.
(524 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5UQ60|YL662_MIMIV Uncharacterized protein L662 OS=Acanthamoe... 30 7.0
sp|Q00359|PGLRX_COCCA Exopolygalacturonase OS=Cochliobolus carbo... 30 7.0
sp|Q0UJJ7|NST1_PHANO Stress response protein NST1 OS=Phaeosphaer... 30 7.0
sp|A0AHX3|MUTS2_LISW6 MutS2 protein OS=Listeria welshimeri serov... 30 9.1
sp|O88879|APAF_MOUSE Apoptotic protease-activating factor 1 OS=M... 30 9.1

>sp|Q5UQ60|YL662_MIMIV Uncharacterized protein L662 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L662 PE=4 SV=1
Length = 462

Score = 30.0 bits (66), Expect = 7.0
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1

Query: 308 NMVCSGGKVHGLFIFTHSQFQLEHLFQSASDVFSVEGV 195
+ CS G + LF++ S +L H+F S ++++ ++G+
Sbjct: 252 SQTCSKGWICHLFLYDKSYCKLGHVFDSENELYDLKGI 289


>sp|Q00359|PGLRX_COCCA Exopolygalacturonase OS=Cochliobolus carbonum
GN=PGX1 PE=3 SV=1
Length = 446

Score = 30.0 bits (66), Expect = 7.0
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -1

Query: 371 GQDCSPFKIVGPNTTTTLMIENMVCSGGKVHGLFIFTHSQF 249
G DC FK PN+T ++++N+VC+G HG+ + + Q+
Sbjct: 249 GDDCVSFK---PNSTN-ILVQNLVCNGS--HGISVGSLGQY 283


>sp|Q0UJJ7|NST1_PHANO Stress response protein NST1 OS=Phaeosphaeria
nodorum GN=NST1 PE=3 SV=3
Length = 1202

Score = 30.0 bits (66), Expect = 7.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2

Query: 440 HPSTH*YLGAHKHAPSPQ 493
HPS H Y AH HAP P+
Sbjct: 488 HPSMHRYNSAHNHAPQPE 505


>sp|A0AHX3|MUTS2_LISW6 MutS2 protein OS=Listeria welshimeri serovar
6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=mutS2
PE=3 SV=1
Length = 785

Score = 29.6 bits (65), Expect = 9.1
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Frame = -1

Query: 398 NVAWDKQCTGQDCSPFKIVGPNT---TTTL----MIENMVCSGGKVHGLFIFTHSQFQLE 240
NV + G+D + I GPNT T TL ++ M SG ++ T + F E
Sbjct: 316 NVVANDIYLGEDFTTIVITGPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVF--E 373

Query: 239 HLFQSASDVFSVEGVWNASTGQLSALACYLEGVTNSSLL 123
H+F D S+E + + ++ + LE V + SL+
Sbjct: 374 HVFADIGDEQSIEQSLSTFSSHMTNIVSILEKVNHKSLI 412


>sp|O88879|APAF_MOUSE Apoptotic protease-activating factor 1 OS=Mus
musculus GN=Apaf1 PE=1 SV=2
Length = 1249

Score = 29.6 bits (65), Expect = 9.1
Identities = 24/66 (36%), Positives = 29/66 (43%)
Frame = -1

Query: 308 NMVCSGGKVHGLFIFTHSQFQLEHLFQSASDVFSVEGVWNASTGQLSALACYLEGVTNSS 129
N V S G H + H QF + +S SV VWN TG L + E V +
Sbjct: 993 NRVFSSGVGHKKAV-RHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFR 1051

Query: 128 LLFDSR 111
LL DSR
Sbjct: 1052 LLQDSR 1057


tr_hit_id A7R6L4
Definition tr|A7R6L4|A7R6L4_VITVI Chromosome undetermined scaffold_1331, whole genome shotgun sequence OS=Vitis vinifera
Align length 88
Score (bit) 55.8
E-value 1.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918340|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_D03.
(524 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7R6L4|A7R6L4_VITVI Chromosome undetermined scaffold_1331, wh... 56 1e-06
tr|A5AQ40|A5AQ40_VITVI Putative uncharacterized protein OS=Vitis... 55 3e-06
tr|A7P1M0|A7P1M0_VITVI Chromosome chr19 scaffold_4, whole genome... 49 2e-04
tr|Q7XI95|Q7XI95_ORYSJ Putative uncharacterized protein P0453G03... 46 0.001
tr|B8B7S6|B8B7S6_ORYSI Putative uncharacterized protein OS=Oryza... 46 0.001
tr|A3BLJ1|A3BLJ1_ORYSJ Putative uncharacterized protein OS=Oryza... 46 0.001
tr|A7P1M1|A7P1M1_VITVI Chromosome chr19 scaffold_4, whole genome... 45 0.002
tr|Q0D558|Q0D558_ORYSJ Os07g0580700 protein OS=Oryza sativa subs... 43 0.011
tr|A2YN09|A2YN09_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.011
tr|A7P1M2|A7P1M2_VITVI Chromosome chr19 scaffold_4, whole genome... 42 0.024
tr|A5BLZ0|A5BLZ0_VITVI Putative uncharacterized protein OS=Vitis... 42 0.024
tr|Q9SVS7|Q9SVS7_ARATH Putative uncharacterized protein F17L22.1... 41 0.032
tr|A7P7M8|A7P7M8_VITVI Chromosome chr9 scaffold_7, whole genome ... 40 0.071
tr|Q5VRW0|Q5VRW0_ORYSJ Putative uncharacterized protein P0013F10... 37 0.46
tr|A2ZPV6|A2ZPV6_ORYSJ Putative uncharacterized protein OS=Oryza... 37 0.46
tr|A2WLA9|A2WLA9_ORYSI Putative uncharacterized protein OS=Oryza... 37 0.46
tr|Q6ASI6|Q6ASI6_BORGA Putative uncharacterized protein OS=Borre... 36 1.3
tr|A7P7M9|A7P7M9_VITVI Chromosome chr9 scaffold_7, whole genome ... 35 1.7
tr|B8F2K6|B8F2K6_BORGA Putative uncharacterized protein OS=Borre... 35 3.0
tr|B8F1L5|B8F1L5_BORGA Putative uncharacterized protein OS=Borre... 35 3.0
tr|A0D4J0|A0D4J0_PARTE Ubiquitin carboxyl-terminal hydrolase OS=... 34 3.9
tr|B6H265|B6H265_PENCH Pc13g04030 protein OS=Penicillium chrysog... 34 3.9
tr|A9RPI5|A9RPI5_PHYPA Predicted protein OS=Physcomitrella paten... 33 6.6
tr|B2KCJ2|B2KCJ2_ELUMP Pyruvate kinase OS=Elusimicrobium minutum... 33 8.6
tr|Q9C940|Q9C940_ARATH Putative uncharacterized protein F14G24.5... 33 8.6
tr|Q0WPB8|Q0WPB8_ARATH Putative uncharacterized protein At1g5278... 33 8.6
tr|Q5C335|Q5C335_SCHJA SJCHGC09429 protein (Fragment) OS=Schisto... 33 8.6
tr|B2VQJ6|B2VQJ6_PYRTR Chitinase OS=Pyrenophora tritici-repentis... 33 8.6

>tr|A7R6L4|A7R6L4_VITVI Chromosome undetermined scaffold_1331, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00008266001 PE=4 SV=1
Length = 633

Score = 55.8 bits (133), Expect = 1e-06
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Frame = -1

Query: 290 GKVHGLFIFTHSQFQLEHLFQS--ASDVFSVEGVWNASTGQLSALACYLEGVTNSSLLFD 117
GKVH L F++S HLF++ EG WN QL +AC + V NS
Sbjct: 12 GKVHMLLRFSNSS---SHLFRTFIPDKTLVAEGAWNKKKNQLYVVACRILNVANSLADVF 68

Query: 116 SRDCDLSISLQFPTTLALTFRYSVIGQV 33
DC + ++L+FP T+++ R +++GQ+
Sbjct: 69 VGDCSIKLNLRFPATMSIKNRSTIVGQI 96


>tr|A5AQ40|A5AQ40_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_026244 PE=4 SV=1
Length = 367

Score = 54.7 bits (130), Expect = 3e-06
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Frame = -1

Query: 431 VCQFPWYKQPLNVAWDKQCTGQDCSPFKIVGPNTTTTLM-IENMVCSG-GKVHGLFIFTH 258
+C F ++ ++ C +CSP P + M + + C GKVH L F++
Sbjct: 155 LCSFGRLVGGFHLEYESDCDIVNCSPLGGGTPRFSPKFMSFDQVECQDDGKVHMLLWFSN 214

Query: 257 SQFQLEHLFQSASDVFSVEGVWNAST-GQLSALACYLEGVTNSSLLFDSRDCDLSISLQF 81
S L F + + S EG W QL +AC + VTNS DC + ++L+F
Sbjct: 215 SSSHLFRTFIVDTTLVS-EGAWQKKKKNQLYVVACRILNVTNSLADAFVGDCLIKLNLRF 273

Query: 80 PTTLALTFRYSVIGQV 33
P T+++ R +++GQ+
Sbjct: 274 PATMSIKNRSTIVGQI 289


>tr|A7P1M0|A7P1M0_VITVI Chromosome chr19 scaffold_4, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00027670001
PE=4 SV=1
Length = 1496

Score = 48.9 bits (115), Expect = 2e-04
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 8/171 (4%)
Frame = -1

Query: 521 FTKDDEATDIGVMVHAYVPQGIN-----VWKDDTAVCQFPWYKQPLNVAWDKQCTG-QDC 360
+T E + G VP+G + +WK ++ P L + +D C Q+C
Sbjct: 264 YTSISEESGTGCPGETNVPEGSSLSAGSIWKI-YSILSTP--SNWLELEYDHDCNSLQNC 320

Query: 359 SPFKIVGPNTTTTLMIENMVCSGGKVH-GLFIFTHSQFQLEHLFQ-SASDVFSVEGVWNA 186
+PF + + + CSG K L I + +LE+ + S EG W+
Sbjct: 321 TPFGGAIQYLPRIIATKGIKCSGAKQQLQLLIKFQNVGKLEYYRPFNPSTTLVGEGRWDD 380

Query: 185 STGQLSALACYLEGVTNSSLLFDSRDCDLSISLQFPTTLALTFRYSVIGQV 33
+L +AC + T+S DC + +SL+FP T + R S++GQ+
Sbjct: 381 KRNRLCVVACRILNTTDSLANARVGDCSIRLSLRFPATWTIRNRSSMVGQI 431



Score = 38.5 bits (88), Expect = 0.21
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -1

Query: 203 EGVWNASTGQLSALACYLEGVTNSSLLFDSRDCDLSISLQFPTTLALTFRYSVIGQV 33
EG W+A +L +AC + S DC + +SL+FP + R +++GQ+
Sbjct: 913 EGWWDAKNNRLCVVACRILNTMQSLANAHIGDCSIRLSLRFPAIWLIRSRSNIVGQI 969



Score = 35.8 bits (81), Expect = 1.3
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = -1

Query: 209 SVEGVWNASTGQLSALACYLEGVTNSSLLFDSRDCDLSISLQFP 78
S EG+++A TG L + C L DS DC++ ++LQFP
Sbjct: 1129 SAEGIYDAKTGGLCMVGCRRLSSKAHILTDDSVDCEILVNLQFP 1172


>tr|Q7XI95|Q7XI95_ORYSJ Putative uncharacterized protein P0453G03.24
OS=Oryza sativa subsp. japonica GN=P0453G03.24 PE=4 SV=1
Length = 2033

Score = 45.8 bits (107), Expect = 0.001
Identities = 25/64 (39%), Positives = 35/64 (54%)
Frame = -1

Query: 209 SVEGVWNASTGQLSALACYLEGVTNSSLLFDSRDCDLSISLQFPTTLALTFRYSVIGQVV 30
S EGVW ASTGQL C GV +++ + D C +SL PTT ++ R ++GQ+
Sbjct: 417 SAEGVWRASTGQLCMTGCL--GVIDAAAVGDEA-CHYRVSLHVPTTFSIRRRSIIVGQIT 473

Query: 29 RKTG 18
G
Sbjct: 474 AGDG 477



Score = 42.7 bits (99), Expect = 0.011
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = -1

Query: 209 SVEGVWNASTGQLSALACYLEGVTNSSLLFDSRDCDLSISLQFPTTLALTFRYSVIGQV- 33
S EGVWNAS G++S +AC G+ + C + L FP T ++T R ++G++
Sbjct: 1416 SAEGVWNASAGEVSMVAC--RGI-------GGKACHFRVCLSFPATFSITGRDMMLGEIT 1466

Query: 32 ---VRKTG 18
V +TG
Sbjct: 1467 TVDVNETG 1474


>tr|B8B7S6|B8B7S6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_26620 PE=4 SV=1
Length = 1046

Score = 45.8 bits (107), Expect = 0.001
Identities = 25/64 (39%), Positives = 35/64 (54%)
Frame = -1

Query: 209 SVEGVWNASTGQLSALACYLEGVTNSSLLFDSRDCDLSISLQFPTTLALTFRYSVIGQVV 30
S EGVW ASTGQL C GV +++ + D C +SL PTT ++ R ++GQ+
Sbjct: 430 SAEGVWRASTGQLCMTGCL--GVIDAAAVGDEA-CHYRVSLHVPTTFSIRRRSIIVGQIT 486

Query: 29 RKTG 18
G
Sbjct: 487 AGDG 490


>tr|A3BLJ1|A3BLJ1_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_023913 PE=4 SV=1
Length = 2010

Score = 45.8 bits (107), Expect = 0.001
Identities = 25/64 (39%), Positives = 35/64 (54%)
Frame = -1

Query: 209 SVEGVWNASTGQLSALACYLEGVTNSSLLFDSRDCDLSISLQFPTTLALTFRYSVIGQVV 30
S EGVW ASTGQL C GV +++ + D C +SL PTT ++ R ++GQ+
Sbjct: 417 SAEGVWRASTGQLCMTGCL--GVIDAAAVGDEA-CHYRVSLHVPTTFSIRRRSIIVGQIT 473

Query: 29 RKTG 18
G
Sbjct: 474 AGDG 477



Score = 42.7 bits (99), Expect = 0.011
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = -1

Query: 209 SVEGVWNASTGQLSALACYLEGVTNSSLLFDSRDCDLSISLQFPTTLALTFRYSVIGQV- 33
S EGVWNAS G++S +AC G+ + C + L FP T ++T R ++G++
Sbjct: 1393 SAEGVWNASAGEVSMVAC--RGI-------GGKACHFRVCLSFPATFSITGRDMMLGEIT 1443

Query: 32 ---VRKTG 18
V +TG
Sbjct: 1444 TVDVNETG 1451


>tr|A7P1M1|A7P1M1_VITVI Chromosome chr19 scaffold_4, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00027671001
PE=4 SV=1
Length = 896

Score = 45.4 bits (106), Expect = 0.002
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Frame = -1

Query: 368 QDCSPFKIVGPNTTTTLMIENMVCSGG--KVHGLFIFTHSQFQLEHLFQSASDVFSVEGV 195
Q+CSPF + I CS ++ + F +S + + ++ + EG
Sbjct: 274 QNCSPFGGGIGYLPQFISITEFQCSEDEERLQVMVKFQNSSYDYYRTYNPSTTLIG-EGS 332

Query: 194 WNASTGQLSALACYLEGVTNSSLLFDSR--DCDLSISLQFPTTLALTFRYSVIGQV 33
W+ + QL +AC + + L D+R DC + +SL+FP L++ R +V+GQ+
Sbjct: 333 WDVNKNQLCLVACRI--LNEGDSLVDARIGDCSIKLSLRFPAILSIRNRSTVVGQI 386



Score = 36.2 bits (82), Expect = 1.0
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = -1

Query: 269 IFTHSQFQLEHLFQSASDVF-----SVEGVWNASTGQLSALACYLEGVTNSSLLFDSRDC 105
+ T S E+ F++ + ++ S EG+++A TG L + C + DS DC
Sbjct: 496 VATSSASTPENSFETNASIYTPVEISAEGIYDAKTGFLCMVGCRKLSSPVKTSSNDSMDC 555

Query: 104 DLSISLQFP 78
++ ++LQFP
Sbjct: 556 EILVNLQFP 564


>tr|Q0D558|Q0D558_ORYSJ Os07g0580700 protein OS=Oryza sativa subsp.
japonica GN=Os07g0580700 PE=4 SV=1
Length = 1030

Score = 42.7 bits (99), Expect = 0.011
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = -1

Query: 209 SVEGVWNASTGQLSALACYLEGVTNSSLLFDSRDCDLSISLQFPTTLALTFRYSVIGQV- 33
S EGVWNAS G++S +AC G+ + C + L FP T ++T R ++G++
Sbjct: 413 SAEGVWNASAGEVSMVAC--RGI-------GGKACHFRVCLSFPATFSITGRDMMLGEIT 463

Query: 32 ---VRKTG 18
V +TG
Sbjct: 464 TVDVNETG 471


>tr|A2YN09|A2YN09_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_26619 PE=4 SV=1
Length = 1020

Score = 42.7 bits (99), Expect = 0.011
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = -1

Query: 209 SVEGVWNASTGQLSALACYLEGVTNSSLLFDSRDCDLSISLQFPTTLALTFRYSVIGQV- 33
S EGVWNAS G++S +AC G+ + C + L FP T ++T R ++G++
Sbjct: 396 SAEGVWNASAGEVSMVAC--RGI-------GGKACHFRVCLSFPATFSITGRDMMLGEIT 446

Query: 32 ---VRKTG 18
V +TG
Sbjct: 447 TVDVNETG 454


>tr|A7P1M2|A7P1M2_VITVI Chromosome chr19 scaffold_4, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00027673001
PE=4 SV=1
Length = 926

Score = 41.6 bits (96), Expect = 0.024
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 8/150 (5%)
Frame = -1

Query: 437 TAVCQFPWYKQPLNVAWDKQCTGQD-CSPFKIVGPNTTTTLMIENMVCSGGKVHGLFIFT 261
T +C P + + C C+PF + E + CS + L +
Sbjct: 241 TGICSILRRGYPFELEYAHHCNSSHICTPFGGDIEYLPHIISTEVIQCSEYERRSLVLV- 299

Query: 260 HSQFQLEHLFQSASDVFSV--EGVWNASTGQLSALACYLEGVTNSSLLFDSRDCDLSISL 87
+FQ + +Q ++ EG W+A +LS +AC L + NS DC + +SL
Sbjct: 300 --KFQSDEHYQPFHPNMTLVGEGWWDAKKSRLSVVACRLSNLKNSLANAQVGDCSVRLSL 357

Query: 86 QFPTTLALTFRYSVIGQV-----VRKTGLF 12
+F T ++ ++GQ+ V ++G F
Sbjct: 358 RFNTIWSIRNMSMMLGQIWSNKTVNESGYF 387



Score = 36.2 bits (82), Expect = 1.0
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1

Query: 209 SVEGVWNASTGQLSALACYLEGVTNSSLLFDSRDCDLSISLQFP 78
S EG++NA TG L + C + DS DC++ ++ QFP
Sbjct: 543 SAEGIYNARTGGLCMVGCRKLSLMTRLSTNDSMDCEILVNFQFP 586