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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918362
Clone id YMU001_000112_F03
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000112_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTCGATTTGTAGTTATGTATACGCGACACATGTGAATCATAATGATATATTGAAGCT
TCTTACAGCCTTGAGGTTCAAATACTACTCAAATCATGGCAGTTGGAAGGCATCACCATA
CCTCTCGCCGAACATATTCTTGTCAAATACTTCTTGGTCTTTTAAGGCTTACAGCTAGTC
ACCCTAAGCCTCCAATACAAATAACCTACTTAACCCTATTGATGCGCCCTTCAGATTGGG
TGCATTTTGACCACTTGAAAGTATTCTTCTCTCGTTTGTGTGCTTTGCCATCTGTAAAAT
TGTGTCAAAACTATTCTTTTCTCTACATCTCATTCATGTCCTTTTGCGGTCTTCAAAATT
ATGTACAAAATGTAAATGTATTCAAACTCTGTGAGCATCTGCATTTAATATTTCTATCCT
CCAGCCATTTCTTGATTGGCTCCCATCAAGATGTAAAGCCATGACATGGAACTTTTTTAA
AGCTGGCCGGTGCGCAATTGAAAGCATTGTAATACCACTTTTGTGCAGCTCCTG
■■Homology search results ■■ -
sp_hit_id Q9QY44
Definition sp|Q9QY44|ABCD2_RAT ATP-binding cassette sub-family D member 2 OS=Rattus norvegicus
Align length 39
Score (bit) 40.0
E-value 0.007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918362|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_F03.
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9QY44|ABCD2_RAT ATP-binding cassette sub-family D member 2 O...    40   0.007
sp|Q61285|ABCD2_MOUSE ATP-binding cassette sub-family D member 2...    40   0.007
sp|Q9UBJ2|ABCD2_HUMAN ATP-binding cassette sub-family D member 2...    40   0.007
sp|P48410|ABCD1_MOUSE ATP-binding cassette sub-family D member 1...    40   0.007
sp|P33897|ABCD1_HUMAN ATP-binding cassette sub-family D member 1...    40   0.007
sp|O89016|ABCD4_MOUSE ATP-binding cassette sub-family D member 4...    36   0.13 
sp|Q55774|Y182_SYNY3 Uncharacterized ABC transporter ATP-binding...    32   1.5  
sp|P16970|ABCD3_RAT ATP-binding cassette sub-family D member 3 O...    32   1.5  
sp|P28288|ABCD3_HUMAN ATP-binding cassette sub-family D member 3...    32   1.5  
sp|O14678|ABCD4_HUMAN ATP-binding cassette sub-family D member 4...    32   2.5  
sp|Q01028|UL07_SHV21 Gene 42 protein OS=Saimiriine herpesvirus 2...    31   4.3  
sp|Q5EAK6|ATM_DROME Serine/threonine-protein kinase ATM OS=Droso...    30   7.3  
sp|P55096|ABCD3_MOUSE ATP-binding cassette sub-family D member 3...    30   9.7  

>sp|Q9QY44|ABCD2_RAT ATP-binding cassette sub-family D member 2
           OS=Rattus norvegicus GN=Abcd2 PE=2 SV=1
          Length = 741

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = -1

Query: 519 SGITMLSIAHRPALKKFHVMALHLDGSQSRNGWRIEILN 403
           +GI++LSI HRP+L K+H   L  DG     GWR E L+
Sbjct: 655 AGISLLSITHRPSLWKYHTHLLQFDG---EGGWRFEQLD 690


>sp|Q61285|ABCD2_MOUSE ATP-binding cassette sub-family D member 2
           OS=Mus musculus GN=Abcd2 PE=1 SV=1
          Length = 741

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = -1

Query: 519 SGITMLSIAHRPALKKFHVMALHLDGSQSRNGWRIEILN 403
           +GI++LSI HRP+L K+H   L  DG     GWR E L+
Sbjct: 655 AGISLLSITHRPSLWKYHTHLLQFDG---EGGWRFEQLD 690


>sp|Q9UBJ2|ABCD2_HUMAN ATP-binding cassette sub-family D member 2
           OS=Homo sapiens GN=ABCD2 PE=1 SV=1
          Length = 740

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = -1

Query: 519 SGITMLSIAHRPALKKFHVMALHLDGSQSRNGWRIEILN 403
           +GI++LSI HRP+L K+H   L  DG     GWR E L+
Sbjct: 654 AGISLLSITHRPSLWKYHTHLLQFDG---EGGWRFEQLD 689


>sp|P48410|ABCD1_MOUSE ATP-binding cassette sub-family D member 1
           OS=Mus musculus GN=Abcd1 PE=1 SV=1
          Length = 736

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 20/47 (42%), Positives = 27/47 (57%)
 Frame = -1

Query: 534 QELHKSGITMLSIAHRPALKKFHVMALHLDGSQSRNGWRIEILNADA 394
           Q    +GI +LSI HRP+L K+H   L  DG     GW+ E L++ A
Sbjct: 645 QAAKDAGIALLSITHRPSLWKYHTHLLQFDG---EGGWKFEKLDSAA 688


>sp|P33897|ABCD1_HUMAN ATP-binding cassette sub-family D member 1
           OS=Homo sapiens GN=ABCD1 PE=1 SV=2
          Length = 745

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 20/47 (42%), Positives = 27/47 (57%)
 Frame = -1

Query: 534 QELHKSGITMLSIAHRPALKKFHVMALHLDGSQSRNGWRIEILNADA 394
           Q    +GI +LSI HRP+L K+H   L  DG     GW+ E L++ A
Sbjct: 645 QAAKDAGIALLSITHRPSLWKYHTHLLQFDG---EGGWKFEKLDSAA 688


>sp|O89016|ABCD4_MOUSE ATP-binding cassette sub-family D member 4
           OS=Mus musculus GN=Abcd4 PE=2 SV=1
          Length = 606

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -1

Query: 516 GITMLSIAHRPALKKFHVMALHLDGSQSRNGWRIEI 409
           G+T +S+ HRP+L+KFH   L L G  S    RI++
Sbjct: 570 GMTFISVGHRPSLEKFHSWVLRLHGGGSWELTRIKL 605


>sp|Q55774|Y182_SYNY3 Uncharacterized ABC transporter ATP-binding
           protein sll0182 OS=Synechocystis sp. (strain PCC 6803)
           GN=sll0182 PE=3 SV=1
          Length = 661

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 516 GITMLSIAHRPALKKFHVMALHLDGSQSRNGWRIEILN 403
           G T +S+ HRP L+ FH   L +   Q+   W+I  +N
Sbjct: 626 GTTFISVGHRPTLRNFHRQCLEV---QAEGRWQISPIN 660


>sp|P16970|ABCD3_RAT ATP-binding cassette sub-family D member 3
           OS=Rattus norvegicus GN=Abcd3 PE=1 SV=3
          Length = 659

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 522 KSGITMLSIAHRPALKKFHVMALHLDG 442
           K GIT+ +++HR +L K H   LH+DG
Sbjct: 615 KVGITLFTVSHRKSLWKHHEYYLHMDG 641


>sp|P28288|ABCD3_HUMAN ATP-binding cassette sub-family D member 3
           OS=Homo sapiens GN=ABCD3 PE=1 SV=1
          Length = 659

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 522 KSGITMLSIAHRPALKKFHVMALHLDG 442
           K GIT+ +++HR +L K H   LH+DG
Sbjct: 615 KVGITLFTVSHRKSLWKHHEYYLHMDG 641


>sp|O14678|ABCD4_HUMAN ATP-binding cassette sub-family D member 4
           OS=Homo sapiens GN=ABCD4 PE=2 SV=1
          Length = 606

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 516 GITMLSIAHRPALKKFHVMALHLDGSQSRNGWRIEI 409
           G+T +S+ HR +L+KFH + L L G       RI++
Sbjct: 570 GMTFISVGHRQSLEKFHSLVLKLCGGGRWELMRIKV 605
tr_hit_id B3RUL2
Definition tr|B3RUL2|B3RUL2_TRIAD Putative uncharacterized protein OS=Trichoplax adhaerens
Align length 41
Score (bit) 44.7
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918362|Adiantum capillus-veneris mRNA, clone:
YMU001_000112_F03.
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3RUL2|B3RUL2_TRIAD Putative uncharacterized protein OS=Trich...    45   0.003
tr|A7T4T4|A7T4T4_NEMVE Predicted protein (Fragment) OS=Nematoste...    44   0.005
tr|A7SGR3|A7SGR3_NEMVE Predicted protein OS=Nematostella vectens...    44   0.005
tr|A8JEC6|A8JEC6_CHLRE Predicted protein (Fragment) OS=Chlamydom...    42   0.020
tr|Q16U17|Q16U17_AEDAE Putative uncharacterized protein OS=Aedes...    42   0.026
tr|Q4SDV6|Q4SDV6_TETNG Chromosome undetermined SCAF14629, whole ...    41   0.034
tr|B0S598|B0S598_DANRE Novel protein similar to vertebrate ATP-b...    41   0.045
tr|O45730|O45730_CAEEL Protein T02D1.5, partially confirmed by t...    40   0.059
tr|B0X1Z0|B0X1Z0_CULQU ATP-binding cassette sub-family D member ...    40   0.059
tr|Q3UYE0|Q3UYE0_MOUSE Putative uncharacterized protein OS=Mus m...    40   0.076
tr|A2ALM9|A2ALM9_MOUSE ATP-binding cassette, sub-family D, membe...    40   0.076
tr|Q2KJ57|Q2KJ57_BOVIN ATP-binding cassette, sub-family D (ALD),...    40   0.076
tr|B7NZN6|B7NZN6_RABIT ATP-binding cassette sub-family D member ...    40   0.076
tr|B2RAM3|B2RAM3_HUMAN cDNA, FLJ95001, Homo sapiens ATP-binding ...    40   0.076
tr|Q4SW09|Q4SW09_TETNG Chromosome undetermined SCAF13695, whole ...    40   0.100
tr|B6N3L8|B6N3L8_BRAFL Putative uncharacterized protein OS=Branc...    40   0.100
tr|B6L3Y6|B6L3Y6_BRAFL Putative uncharacterized protein OS=Branc...    40   0.100
tr|A8WMZ0|A8WMZ0_CAEBR CBR-PMP-4 protein OS=Caenorhabditis brigg...    39   0.13 
tr|B4R2D7|B4R2D7_DROSI GD24389 OS=Drosophila simulans GN=GD24389...    39   0.17 
tr|B4IL86|B4IL86_DROSE GM23229 OS=Drosophila sechellia GN=GM2322...    39   0.17 
tr|B3P9V3|B3P9V3_DROER GG16459 OS=Drosophila erecta GN=GG16459 P...    39   0.17 
tr|Q6CHP7|Q6CHP7_YARLI YALI0A06655p OS=Yarrowia lipolytica GN=YA...    39   0.17 
tr|A8N2A3|A8N2A3_COPC7 Putative uncharacterized protein OS=Copri...    39   0.17 
tr|Q3TU16|Q3TU16_MOUSE Putative uncharacterized protein (Fragmen...    39   0.22 
tr|B4JZT5|B4JZT5_DROGR GH24000 OS=Drosophila grimshawi GN=GH2400...    39   0.22 
tr|Q9SLJ9|Q9SLJ9_ARATH F20D21.17 protein OS=Arabidopsis thaliana...    38   0.29 
tr|Q6NLC1|Q6NLC1_ARATH At1g54350 OS=Arabidopsis thaliana GN=At1g...    38   0.29 
tr|A4HLP7|A4HLP7_LEIBR ABC transporter, putative OS=Leishmania b...    38   0.38 
tr|Q5KK89|Q5KK89_CRYNE Adrenoleukodystrophy protein, putative OS...    38   0.38 
tr|Q55W02|Q55W02_CRYNE Putative uncharacterized protein OS=Crypt...    38   0.38 

>tr|B3RUL2|B3RUL2_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_55331 PE=4 SV=1
          Length = 754

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 21/41 (51%), Positives = 27/41 (65%)
 Frame = -1

Query: 516 GITMLSIAHRPALKKFHVMALHLDGSQSRNGWRIEILNADA 394
           GI +LSI+HRP+L K+H   L  DG     GWR+E LN +A
Sbjct: 669 GIILLSISHRPSLWKYHTHVLQFDG---EGGWRLEELNTEA 706


>tr|A7T4T4|A7T4T4_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g5736 PE=3 SV=1
          Length = 185

 Score = 43.9 bits (102), Expect = 0.005
 Identities = 22/44 (50%), Positives = 27/44 (61%)
 Frame = -1

Query: 534 QELHKSGITMLSIAHRPALKKFHVMALHLDGSQSRNGWRIEILN 403
           Q    SGIT+LSI+HRP+L K+H   L  DG     GW+ E LN
Sbjct: 109 QAAKDSGITLLSISHRPSLWKYHTHILQFDG---EGGWKYEQLN 149


>tr|A7SGR3|A7SGR3_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g245176 PE=3 SV=1
          Length = 727

 Score = 43.9 bits (102), Expect = 0.005
 Identities = 22/44 (50%), Positives = 27/44 (61%)
 Frame = -1

Query: 534 QELHKSGITMLSIAHRPALKKFHVMALHLDGSQSRNGWRIEILN 403
           Q    SGIT+LSI+HRP+L K+H   L  DG     GW+ E LN
Sbjct: 643 QAAKDSGITLLSISHRPSLWKYHTHILQFDG---EGGWKYEQLN 683


>tr|A8JEC6|A8JEC6_CHLRE Predicted protein (Fragment)
           OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_179191 PE=3
           SV=1
          Length = 641

 Score = 42.0 bits (97), Expect = 0.020
 Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = -1

Query: 519 SGITMLSIAHRPALKKFHVMALHLDG--SQSRNGWRIEIL 406
           SG+T LSIA RPALK+FH   +H D   SQ+  GW  E L
Sbjct: 404 SGVTFLSIALRPALKRFHSAVIHFDANVSQTGLGWWSEAL 443


>tr|Q16U17|Q16U17_AEDAE Putative uncharacterized protein OS=Aedes
           aegypti GN=AAEL010047 PE=3 SV=1
          Length = 753

 Score = 41.6 bits (96), Expect = 0.026
 Identities = 21/43 (48%), Positives = 25/43 (58%)
 Frame = -1

Query: 516 GITMLSIAHRPALKKFHVMALHLDGSQSRNGWRIEILNADAHR 388
           GIT+L+I HRP L KFH   L  DG   + GW  E L  DA +
Sbjct: 685 GITLLTITHRPTLWKFHTHILEFDG---QGGWVFEALAKDAQQ 724


>tr|Q4SDV6|Q4SDV6_TETNG Chromosome undetermined SCAF14629, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00019846001 PE=3 SV=1
          Length = 718

 Score = 41.2 bits (95), Expect = 0.034
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = -1

Query: 534 QELHKSGITMLSIAHRPALKKFHVMALHLDGSQSRNGWRIEILNA 400
           Q    +GI++LSI HRP+L K+H   L  DG     GWR E L++
Sbjct: 635 QAAKNAGISLLSITHRPSLWKYHTHLLQFDG---EGGWRFEQLDS 676


>tr|B0S598|B0S598_DANRE Novel protein similar to vertebrate
           ATP-binding cassette, sub-family D (ALD) family
           (Fragment) OS=Danio rerio GN=CH211-169P10.2-001 PE=3
           SV=1
          Length = 728

 Score = 40.8 bits (94), Expect = 0.045
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = -1

Query: 519 SGITMLSIAHRPALKKFHVMALHLDGSQSRNGWRIEILNA 400
           +GI++LSI HRP+L K+H   L  DG     GWR E L+A
Sbjct: 651 AGISLLSITHRPSLWKYHSHLLQFDG---EGGWRFEKLDA 687


>tr|O45730|O45730_CAEEL Protein T02D1.5, partially confirmed by
           transcript evidence OS=Caenorhabditis elegans GN=pmp-4
           PE=2 SV=1
          Length = 734

 Score = 40.4 bits (93), Expect = 0.059
 Identities = 19/44 (43%), Positives = 27/44 (61%)
 Frame = -1

Query: 534 QELHKSGITMLSIAHRPALKKFHVMALHLDGSQSRNGWRIEILN 403
           Q +  SGIT+L++ HRP+L KFH   L  DG     G+++  LN
Sbjct: 639 QAIKDSGITLLTVTHRPSLWKFHTHLLQYDG---EGGYKVSSLN 679


>tr|B0X1Z0|B0X1Z0_CULQU ATP-binding cassette sub-family D member 1
           OS=Culex quinquefasciatus GN=CpipJ_CPIJ013253 PE=3 SV=1
          Length = 753

 Score = 40.4 bits (93), Expect = 0.059
 Identities = 21/41 (51%), Positives = 24/41 (58%)
 Frame = -1

Query: 516 GITMLSIAHRPALKKFHVMALHLDGSQSRNGWRIEILNADA 394
           GIT+L+I HRP L KFH   L  DG   + GW  E L  DA
Sbjct: 684 GITLLTITHRPTLWKFHTHILEFDG---QGGWVFEPLAKDA 721


>tr|Q3UYE0|Q3UYE0_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Abcd2 PE=2 SV=1
          Length = 225

 Score = 40.0 bits (92), Expect = 0.076
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = -1

Query: 519 SGITMLSIAHRPALKKFHVMALHLDGSQSRNGWRIEILN 403
           +GI++LSI HRP+L K+H   L  DG     GWR E L+
Sbjct: 150 AGISLLSITHRPSLWKYHTHLLQFDG---EGGWRFEQLD 185